Wall clock time and date at job start Tue Mar 31 2020 15:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29823 * 118.58341 * 2 1 4 4 C 1.49918 * 122.84335 * 180.02562 * 3 2 1 5 5 C 1.49913 * 111.18619 * 340.43699 * 4 3 2 6 6 C 1.29751 * 122.81726 * 19.46412 * 5 4 3 7 7 C 1.49911 * 122.89435 * 0.14872 * 6 5 4 8 8 H 1.09003 * 109.13385 * 100.75522 * 7 6 5 9 9 C 1.50697 * 109.13980 * 219.93096 * 7 6 5 10 10 O 1.21282 * 119.99968 * 120.81836 * 9 7 6 11 11 N 1.34774 * 120.00166 * 300.82023 * 9 7 6 12 12 C 1.47859 * 134.73208 * 359.94979 * 11 9 7 13 13 C 1.54188 * 86.43262 * 203.64369 * 12 11 9 14 14 C 1.46242 * 134.73714 * 179.97438 * 11 9 7 15 15 C 1.52267 * 122.25503 * 29.10988 * 14 11 9 16 16 N 1.47728 * 87.55849 * 209.55869 * 15 14 11 17 17 C 1.46901 * 110.99723 * 137.73214 * 16 15 14 18 18 C 1.53000 * 109.46769 * 169.99991 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47116 * 59.99479 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00079 * 24 22 20 28 28 C 1.47719 * 88.18760 * 25.89504 * 16 15 14 29 29 H 1.08994 * 109.47506 * 270.02241 * 1 2 3 30 30 H 1.09001 * 109.47420 * 30.02376 * 1 2 3 31 31 H 1.09003 * 109.47179 * 150.01891 * 1 2 3 32 32 H 1.08003 * 118.58110 * 0.02562 * 3 2 1 33 33 H 1.08993 * 109.13167 * 100.87333 * 4 3 2 34 34 H 1.08991 * 109.13630 * 219.99992 * 4 3 2 35 35 H 1.07993 * 118.58244 * 199.53796 * 5 4 3 36 36 H 1.08004 * 118.52615 * 180.02562 * 6 5 4 37 37 H 1.09003 * 113.71526 * 89.26370 * 12 11 9 38 38 H 1.08993 * 113.71762 * 318.02571 * 12 11 9 39 39 H 1.09003 * 113.81925 * 223.16075 * 13 12 11 40 40 H 1.09005 * 113.92681 * 91.61514 * 13 12 11 41 41 H 1.09000 * 113.53961 * 94.88521 * 15 14 11 42 42 H 1.08998 * 113.60164 * 324.23864 * 15 14 11 43 43 H 1.09002 * 109.47401 * 49.99698 * 17 16 15 44 44 H 1.09001 * 109.46874 * 289.99711 * 17 16 15 45 45 H 1.09001 * 109.47194 * 299.99524 * 18 17 16 46 46 H 1.08992 * 109.47399 * 59.99697 * 18 17 16 47 47 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 48 48 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 49 49 H 0.97000 * 119.99425 * 180.02562 * 23 22 20 50 50 H 1.09004 * 113.53340 * 88.77792 * 28 16 15 51 51 H 1.09003 * 113.53829 * 219.42867 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2514 -0.0006 5 6 4.2614 -0.0220 0.4670 6 6 3.6398 -1.1609 0.4685 7 6 2.2242 -1.3164 0.0004 8 1 2.2250 -1.7232 -1.0109 9 6 1.5030 -2.2716 0.9161 10 8 0.5152 -1.9061 1.5173 11 7 1.9559 -3.5320 1.0671 12 6 3.0892 -4.3038 0.5138 13 6 2.2571 -5.5643 0.8243 14 6 1.5264 -4.6938 1.8445 15 6 0.0684 -4.9305 2.2141 16 7 0.5536 -5.6240 3.4249 17 6 -0.2444 -5.2511 4.6005 18 6 0.1179 -6.1644 5.7733 19 6 -0.7137 -5.7764 6.9976 20 6 -0.3573 -6.6763 8.1527 21 1 0.3875 -7.4481 8.0261 22 6 -0.9821 -6.5145 9.3710 23 7 -1.8887 -5.5743 9.5253 24 14 -0.5399 -7.6295 10.8030 25 1 0.9040 -7.4820 11.1177 26 1 -1.3470 -7.2531 11.9912 27 1 -0.8252 -9.0404 10.4381 28 6 1.7840 -4.8109 3.3406 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5424 2.0475 0.0004 33 1 3.9645 1.4718 -1.0119 34 1 3.9211 2.0644 0.6614 35 1 5.2820 0.0105 0.8186 36 1 4.1665 -2.0355 0.8210 37 1 4.0026 -4.2252 1.1035 38 1 3.2540 -4.1385 -0.5508 39 1 2.8346 -6.3742 1.2701 40 1 1.6291 -5.8943 -0.0033 41 1 -0.4563 -5.5851 1.5183 42 1 -0.4818 -4.0142 2.4283 43 1 -1.3042 -5.3593 4.3696 44 1 -0.0349 -4.2155 4.8682 45 1 -0.0917 -7.2000 5.5056 46 1 1.1776 -6.0561 6.0043 47 1 -0.5045 -4.7408 7.2656 48 1 -1.7734 -5.8850 6.7664 49 1 -2.3280 -5.4602 10.3826 50 1 1.7147 -3.8605 3.8699 51 1 2.6900 -5.3658 3.5842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277950504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:27 Heat of formation + Delta-G solvation = 60.054311 kcal Electronic energy + Delta-G solvation = -28256.248324 eV Core-core repulsion = 24544.113798 eV Total energy + Delta-G solvation = -3712.134527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57207 -39.93760 -37.86579 -37.04845 -33.97566 -33.20697 -32.03308 -31.56394 -29.66201 -28.20183 -27.23899 -26.09946 -25.31310 -24.66286 -23.12630 -22.19385 -21.05771 -20.54792 -19.99746 -18.29935 -17.17328 -16.79338 -16.51472 -16.18490 -15.96064 -15.76342 -15.42692 -14.97079 -14.58616 -14.48681 -14.33651 -13.96161 -13.81597 -13.59031 -13.12260 -13.07750 -12.84276 -12.57861 -12.46691 -12.36300 -12.22432 -12.11400 -11.98284 -11.75206 -11.53429 -11.17098 -11.08997 -10.81489 -10.72659 -10.64223 -10.47104 -10.40073 -10.00155 -9.71671 -9.59095 -9.25874 -9.02451 -8.92914 -8.77683 -8.65027 -8.29542 -5.94720 -3.96862 1.65900 1.97135 2.45996 2.58551 3.36721 3.40604 3.43405 4.00186 4.12497 4.16631 4.18047 4.35774 4.42219 4.50374 4.68969 4.74413 4.80423 4.85542 4.91235 4.96600 5.07678 5.14562 5.28972 5.35037 5.37052 5.40781 5.50286 5.52816 5.57608 5.59934 5.69462 5.71681 5.74130 5.76355 5.81089 5.86053 5.86186 6.07012 6.13033 6.31605 6.37452 6.43583 6.46683 6.66930 6.77460 6.87162 7.21584 7.30164 7.51372 7.73660 7.88987 7.99641 8.05895 8.49052 9.10175 9.66676 11.16789 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002241 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.001245 B =12490.913346 C =13064.261135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.099 4.099 3 C -0.165 4.165 4 C -0.064 4.064 5 C -0.139 4.139 6 C -0.157 4.157 7 C -0.031 4.031 8 H 0.111 0.889 9 C 0.545 3.455 10 O -0.523 6.523 11 N -0.630 5.630 12 C 0.099 3.901 13 C -0.117 4.117 14 C 0.131 3.869 15 C 0.000 4.000 16 N -0.463 5.463 17 C 0.024 3.976 18 C -0.097 4.097 19 C 0.021 3.979 20 C -0.518 4.518 21 H 0.055 0.945 22 C 0.055 3.945 23 N -0.897 5.897 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 C 0.009 3.991 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.045 0.955 47 H 0.013 0.987 48 H 0.015 0.985 49 H 0.260 0.740 50 H 0.076 0.924 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 9.907 -27.091 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.099 4.099 3 C -0.183 4.183 4 C -0.100 4.100 5 C -0.157 4.157 6 C -0.175 4.175 7 C -0.051 4.051 8 H 0.129 0.871 9 C 0.335 3.665 10 O -0.398 6.398 11 N -0.366 5.366 12 C -0.024 4.024 13 C -0.154 4.154 14 C 0.046 3.954 15 C -0.129 4.129 16 N -0.185 5.185 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.017 4.017 20 C -0.556 4.556 21 H 0.073 0.927 22 C -0.146 4.146 23 N -0.536 5.536 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.122 4.122 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.882 9.681 -26.605 31.104 hybrid contribution 0.150 0.393 1.094 1.172 sum 13.032 10.074 -25.511 30.367 Atomic orbital electron populations 1.20881 0.91050 1.00938 1.03407 1.20586 0.96480 0.92644 1.00226 1.21945 0.95586 0.97481 1.03269 1.19268 0.92655 0.96423 1.01638 1.22211 0.99942 0.94224 0.99309 1.21880 0.94201 0.98883 1.02555 1.18817 0.93069 0.93690 0.99574 0.87128 1.20088 0.84295 0.79892 0.82266 1.90723 1.26330 1.75068 1.47728 1.49983 1.30030 1.09986 1.46566 1.23298 0.90844 0.88410 0.99799 1.23097 0.97931 0.96293 0.98118 1.22698 0.97259 0.82657 0.92830 1.23916 0.95347 0.99095 0.94563 1.68969 1.03849 1.42744 1.02949 1.22855 0.97698 0.98578 0.91327 1.21512 1.00056 0.98079 0.93891 1.19085 0.94931 0.96642 0.91021 1.21215 1.22109 1.16652 0.95653 0.92716 1.25041 0.95166 0.95553 0.98825 1.69967 1.26483 1.32534 1.24653 0.86649 0.78388 0.81101 0.81804 1.20277 1.21329 1.20221 1.23978 0.97227 0.97874 0.93080 0.89747 0.92959 0.92446 0.86764 0.89530 0.90001 0.86701 0.86753 0.89474 0.89829 0.88733 0.88417 0.89439 0.89753 0.91218 0.94041 0.92656 0.93606 0.96868 0.96653 0.93003 0.90625 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 8.17 36.00 0.29 -0.85 16 2 C -0.10 -1.02 5.37 -101.12 -0.54 -1.56 16 3 C -0.16 -1.46 9.49 -36.07 -0.34 -1.80 16 4 C -0.06 -0.44 6.27 -29.79 -0.19 -0.63 16 5 C -0.14 -1.04 9.92 -36.06 -0.36 -1.40 16 6 C -0.16 -1.31 8.80 -36.06 -0.32 -1.62 16 7 C -0.03 -0.30 2.75 -94.84 -0.26 -0.56 16 8 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.55 6.71 7.08 -10.99 -0.08 6.63 16 10 O -0.52 -8.38 13.03 5.56 0.07 -8.30 16 11 N -0.63 -6.59 3.55 -164.66 -0.58 -7.17 16 12 C 0.10 0.64 7.15 -2.96 -0.02 0.62 16 13 C -0.12 -0.88 8.11 -26.27 -0.21 -1.09 16 14 C 0.13 1.50 1.81 -134.34 -0.24 1.25 16 15 C 0.00 0.00 7.43 -6.70 -0.05 -0.04 16 16 N -0.46 -7.30 6.32 -244.60 -1.55 -8.85 16 17 C 0.02 0.44 4.81 -3.82 -0.02 0.42 16 18 C -0.10 -2.14 5.48 -26.73 -0.15 -2.29 16 19 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 20 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 21 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 22 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 24 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.01 0.12 7.64 -6.71 -0.05 0.07 16 29 H 0.08 1.11 6.98 -51.93 -0.36 0.74 16 30 H 0.05 0.46 7.95 -51.93 -0.41 0.05 16 31 H 0.06 0.63 7.74 -51.93 -0.40 0.23 16 32 H 0.11 0.89 7.88 -52.48 -0.41 0.48 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.11 0.83 6.40 -52.48 -0.34 0.49 16 37 H 0.09 0.46 7.83 -51.93 -0.41 0.05 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.08 1.36 7.05 -51.93 -0.37 1.00 16 43 H 0.07 1.32 8.08 -51.93 -0.42 0.91 16 44 H 0.04 0.81 7.31 -51.93 -0.38 0.43 16 45 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 51 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 403.32 15.07 6.08 6.08 Total: -1.00 -34.09 403.32 -12.27 -46.37 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.92 Total: -1.81 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.09 Total: -16.43 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -1.40 Total: -43.12 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.09 -12.27 -46.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277950504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.421 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds