Wall clock time and date at job start Tue Mar 31 2020 15:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.29823 * 118.58341 * 2 1 4 4 C 1.49918 * 122.84335 * 180.02562 * 3 2 1 5 5 C 1.49913 * 111.18619 * 340.43699 * 4 3 2 6 6 C 1.29751 * 122.81726 * 19.46412 * 5 4 3 7 7 C 1.49911 * 122.89435 * 0.14872 * 6 5 4 8 8 H 1.09003 * 109.13385 * 100.75522 * 7 6 5 9 9 C 1.50697 * 109.13980 * 219.93096 * 7 6 5 10 10 O 1.21282 * 119.99968 * 120.81836 * 9 7 6 11 11 N 1.34774 * 120.00166 * 300.82023 * 9 7 6 12 12 C 1.47859 * 134.73208 * 359.94979 * 11 9 7 13 13 C 1.54188 * 86.43262 * 203.64369 * 12 11 9 14 14 C 1.46242 * 134.73714 * 179.97438 * 11 9 7 15 15 C 1.52267 * 122.25503 * 29.10988 * 14 11 9 16 16 N 1.47728 * 87.55849 * 209.55869 * 15 14 11 17 17 C 1.46901 * 110.99723 * 137.73214 * 16 15 14 18 18 C 1.53000 * 109.46769 * 169.99991 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.47291 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99920 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00428 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99563 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00432 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47116 * 59.99479 * 24 22 20 26 26 H 1.48490 * 109.47381 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00079 * 24 22 20 28 28 C 1.47719 * 88.18760 * 25.89504 * 16 15 14 29 29 H 1.08994 * 109.47506 * 270.02241 * 1 2 3 30 30 H 1.09001 * 109.47420 * 30.02376 * 1 2 3 31 31 H 1.09003 * 109.47179 * 150.01891 * 1 2 3 32 32 H 1.08003 * 118.58110 * 0.02562 * 3 2 1 33 33 H 1.08993 * 109.13167 * 100.87333 * 4 3 2 34 34 H 1.08991 * 109.13630 * 219.99992 * 4 3 2 35 35 H 1.07993 * 118.58244 * 199.53796 * 5 4 3 36 36 H 1.08004 * 118.52615 * 180.02562 * 6 5 4 37 37 H 1.09003 * 113.71526 * 89.26370 * 12 11 9 38 38 H 1.08993 * 113.71762 * 318.02571 * 12 11 9 39 39 H 1.09003 * 113.81925 * 223.16075 * 13 12 11 40 40 H 1.09005 * 113.92681 * 91.61514 * 13 12 11 41 41 H 1.09000 * 113.53961 * 94.88521 * 15 14 11 42 42 H 1.08998 * 113.60164 * 324.23864 * 15 14 11 43 43 H 1.09002 * 109.47401 * 49.99698 * 17 16 15 44 44 H 1.09001 * 109.46874 * 289.99711 * 17 16 15 45 45 H 1.09001 * 109.47194 * 299.99524 * 18 17 16 46 46 H 1.08992 * 109.47399 * 59.99697 * 18 17 16 47 47 H 1.09001 * 109.47109 * 299.99380 * 19 18 17 48 48 H 1.09002 * 109.47508 * 59.99571 * 19 18 17 49 49 H 0.97000 * 119.99425 * 180.02562 * 23 22 20 50 50 H 1.09004 * 113.53340 * 88.77792 * 28 16 15 51 51 H 1.09003 * 113.53829 * 219.42867 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1281 1.1400 0.0000 4 6 3.6231 1.2514 -0.0006 5 6 4.2614 -0.0220 0.4670 6 6 3.6398 -1.1609 0.4685 7 6 2.2242 -1.3164 0.0004 8 1 2.2250 -1.7232 -1.0109 9 6 1.5030 -2.2716 0.9161 10 8 0.5152 -1.9061 1.5173 11 7 1.9559 -3.5320 1.0671 12 6 3.0892 -4.3038 0.5138 13 6 2.2571 -5.5643 0.8243 14 6 1.5264 -4.6938 1.8445 15 6 0.0684 -4.9305 2.2141 16 7 0.5536 -5.6240 3.4249 17 6 -0.2444 -5.2511 4.6005 18 6 0.1179 -6.1644 5.7733 19 6 -0.7137 -5.7764 6.9976 20 6 -0.3573 -6.6763 8.1527 21 1 0.3875 -7.4481 8.0261 22 6 -0.9821 -6.5145 9.3710 23 7 -1.8887 -5.5743 9.5253 24 14 -0.5399 -7.6295 10.8030 25 1 0.9040 -7.4820 11.1177 26 1 -1.3470 -7.2531 11.9912 27 1 -0.8252 -9.0404 10.4381 28 6 1.7840 -4.8109 3.3406 29 1 -0.3634 0.0004 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5424 2.0475 0.0004 33 1 3.9645 1.4718 -1.0119 34 1 3.9211 2.0644 0.6614 35 1 5.2820 0.0105 0.8186 36 1 4.1665 -2.0355 0.8210 37 1 4.0026 -4.2252 1.1035 38 1 3.2540 -4.1385 -0.5508 39 1 2.8346 -6.3742 1.2701 40 1 1.6291 -5.8943 -0.0033 41 1 -0.4563 -5.5851 1.5183 42 1 -0.4818 -4.0142 2.4283 43 1 -1.3042 -5.3593 4.3696 44 1 -0.0349 -4.2155 4.8682 45 1 -0.0917 -7.2000 5.5056 46 1 1.1776 -6.0561 6.0043 47 1 -0.5045 -4.7408 7.2656 48 1 -1.7734 -5.8850 6.7664 49 1 -2.3280 -5.4602 10.3826 50 1 1.7147 -3.8605 3.8699 51 1 2.6900 -5.3658 3.5842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277950504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:26 Heat of formation + Delta-G solvation = 38.380930 kcal Electronic energy + Delta-G solvation = -28257.188153 eV Core-core repulsion = 24544.113798 eV Total energy + Delta-G solvation = -3713.074355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50291 -40.80325 -38.76114 -38.01698 -35.97944 -33.96445 -33.77548 -32.50598 -30.45358 -29.81559 -27.98980 -27.24855 -26.92789 -25.36831 -24.47368 -23.14602 -22.28916 -21.75369 -21.25958 -19.17228 -18.55814 -17.93265 -17.61628 -17.37118 -16.76279 -16.64573 -16.55053 -16.42384 -15.85649 -15.72664 -15.36045 -14.87647 -14.69513 -14.57396 -14.37846 -14.24536 -13.93133 -13.79594 -13.76816 -13.40841 -13.35475 -13.06224 -12.99148 -12.88309 -12.68588 -12.59286 -12.49985 -12.30540 -12.19208 -12.00973 -11.71966 -11.49641 -11.37036 -11.34423 -11.03918 -10.88191 -10.58632 -10.36604 -10.06737 -9.72576 -9.46211 -8.22746 -6.35087 1.01256 1.30391 1.37893 1.42311 1.50296 1.61065 1.78632 2.39108 2.97694 3.09888 3.20364 3.39946 3.48752 3.56362 3.70495 3.78806 3.90520 3.99051 4.11731 4.23217 4.23334 4.30110 4.37619 4.43645 4.46994 4.53872 4.59021 4.62550 4.63665 4.64370 4.75408 4.77069 4.79469 4.88983 4.92118 4.95116 5.01556 5.05119 5.08000 5.14409 5.18310 5.23600 5.26575 5.33623 5.46997 5.67654 5.78255 5.80294 5.83668 5.86555 5.97849 6.21239 6.70844 6.81269 7.11242 7.34390 8.89451 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.002241 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.001245 B =12490.913346 C =13064.261135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.130 4.130 3 C -0.157 4.157 4 C -0.068 4.068 5 C -0.137 4.137 6 C -0.172 4.172 7 C -0.023 4.023 8 H 0.129 0.871 9 C 0.535 3.465 10 O -0.575 6.575 11 N -0.633 5.633 12 C 0.105 3.895 13 C -0.103 4.103 14 C 0.134 3.866 15 C -0.003 4.003 16 N -0.463 5.463 17 C 0.036 3.964 18 C -0.079 4.079 19 C 0.024 3.976 20 C -0.543 4.543 21 H 0.063 0.937 22 C -0.005 4.005 23 N -0.937 5.937 24 Si 0.971 3.029 25 H -0.265 1.265 26 H -0.282 1.282 27 H -0.264 1.264 28 C 0.005 3.995 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.120 0.880 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.057 0.943 46 H 0.049 0.951 47 H -0.016 1.016 48 H -0.011 1.011 49 H 0.264 0.736 50 H 0.048 0.952 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.955 8.825 -28.708 34.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.130 4.130 3 C -0.174 4.174 4 C -0.104 4.104 5 C -0.155 4.155 6 C -0.190 4.190 7 C -0.043 4.043 8 H 0.146 0.854 9 C 0.326 3.674 10 O -0.454 6.454 11 N -0.367 5.367 12 C -0.016 4.016 13 C -0.141 4.141 14 C 0.047 3.953 15 C -0.133 4.133 16 N -0.185 5.185 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.013 4.013 20 C -0.581 4.581 21 H 0.081 0.919 22 C -0.202 4.202 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.208 1.208 27 H -0.189 1.189 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.003 0.997 48 H 0.007 0.993 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 16.257 8.578 -28.262 33.713 hybrid contribution -0.921 0.827 1.580 2.007 sum 15.336 9.404 -26.682 32.180 Atomic orbital electron populations 1.20749 0.92285 1.01155 1.01338 1.20686 0.95978 0.93827 1.02501 1.22249 0.97087 0.97164 1.00949 1.19406 0.91009 0.96775 1.03177 1.22486 1.00829 0.93927 0.98214 1.21951 0.93432 0.99900 1.03754 1.18789 0.93399 0.92451 0.99651 0.85423 1.20753 0.83844 0.80655 0.82126 1.90711 1.28621 1.76208 1.49834 1.50175 1.31173 1.09316 1.46002 1.23608 0.89960 0.86120 1.01874 1.23166 0.97511 0.96682 0.96745 1.22759 0.95017 0.85054 0.92461 1.23892 0.97482 0.97876 0.94044 1.68894 1.04401 1.43187 1.02013 1.22557 0.97877 0.96859 0.91938 1.21231 0.99094 0.98561 0.92814 1.18990 0.94248 0.94920 0.93174 1.21644 1.22583 1.17228 0.96664 0.91897 1.26086 0.94770 0.97155 1.02189 1.70118 1.27561 1.34339 1.25672 0.85415 0.78606 0.79020 0.77502 1.18946 1.20774 1.18879 1.23981 0.96880 0.96545 0.95081 0.93043 0.91452 0.93428 0.86193 0.87396 0.88767 0.84706 0.85583 0.87630 0.86792 0.87121 0.87111 0.88029 0.92848 0.92027 0.95702 0.92379 0.93214 0.99731 0.99255 0.92723 0.93364 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 8.17 71.23 0.58 -1.70 16 2 C -0.13 -2.65 5.37 -15.52 -0.08 -2.74 16 3 C -0.16 -2.59 9.49 26.62 0.25 -2.33 16 4 C -0.07 -0.77 6.27 28.61 0.18 -0.59 16 5 C -0.14 -1.66 9.92 26.69 0.26 -1.40 16 6 C -0.17 -2.47 8.80 26.69 0.23 -2.23 16 7 C -0.02 -0.41 2.75 -13.52 -0.04 -0.45 16 8 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 9 C 0.54 13.32 7.08 87.66 0.62 13.94 16 10 O -0.57 -19.85 13.03 -3.04 -0.04 -19.88 16 11 N -0.63 -12.47 3.55 -793.25 -2.82 -15.29 16 12 C 0.10 0.96 7.15 86.34 0.62 1.58 16 13 C -0.10 -1.21 8.11 30.91 0.25 -0.96 16 14 C 0.13 2.93 1.81 3.31 0.01 2.93 16 15 C 0.00 -0.10 7.43 83.98 0.62 0.53 16 16 N -0.46 -14.83 6.32 -927.78 -5.87 -20.70 16 17 C 0.04 1.46 4.81 86.30 0.42 1.87 16 18 C -0.08 -3.58 5.48 30.59 0.17 -3.42 16 19 C 0.02 1.39 4.97 29.85 0.15 1.53 16 20 C -0.54 -32.54 9.11 25.60 0.23 -32.30 16 21 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 22 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 23 N -0.94 -59.65 13.29 21.45 0.28 -59.36 16 24 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.01 0.15 7.64 83.98 0.64 0.79 16 29 H 0.05 1.51 6.98 -2.39 -0.02 1.49 16 30 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 31 H 0.05 1.14 7.74 -2.39 -0.02 1.12 16 32 H 0.12 1.77 7.88 -2.91 -0.02 1.74 16 33 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 36 H 0.13 1.44 6.40 -2.91 -0.02 1.42 16 37 H 0.11 0.65 7.83 -2.39 -0.02 0.63 16 38 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 42 H 0.05 1.88 7.05 -2.39 -0.02 1.87 16 43 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 44 H 0.02 1.06 7.31 -2.39 -0.02 1.04 16 45 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 47 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 49 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 50 H 0.05 1.60 7.42 -2.38 -0.02 1.58 16 51 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -78.58 403.32 0.05 -78.52 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.89 Total: 13.76 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 5.58 Total: -24.75 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -8.40 Total: -95.35 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.04 Total: -19.88 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.58 0.05 -78.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277950504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.906 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds