Wall clock time and date at job start Tue Mar 31 2020 15:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47261 * 2 1 4 4 C 1.53007 * 109.47162 * 240.00384 * 2 1 3 5 5 C 1.52991 * 109.47349 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47137 * 60.00142 * 5 4 2 7 7 C 1.53001 * 109.47086 * 299.99934 * 6 5 4 8 8 H 1.09002 * 109.46978 * 300.00253 * 7 6 5 9 9 C 1.53001 * 109.47387 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.46624 * 64.99631 * 9 7 6 11 11 C 1.34785 * 119.99761 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99670 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.39952 * 120.00129 * 174.85166 * 13 11 10 15 15 C 1.39285 * 119.94812 * 325.52938 * 14 13 11 16 16 C 1.38491 * 120.42966 * 179.75814 * 15 14 13 17 17 C 1.37677 * 120.31851 * 0.52013 * 16 15 14 18 18 C 1.40745 * 119.88583 * 359.73850 * 17 16 15 19 19 C 1.41405 * 120.21013 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99970 * 25.14043 * 19 18 17 21 21 C 1.39927 * 120.00049 * 205.14874 * 19 18 17 22 22 N 1.30832 * 120.00003 * 16.77621 * 21 19 18 23 23 Si 1.86797 * 120.00138 * 196.78617 * 21 19 18 24 24 H 1.48498 * 109.47446 * 89.99575 * 23 21 19 25 25 H 1.48507 * 109.47293 * 209.99596 * 23 21 19 26 26 H 1.48508 * 109.47124 * 329.99267 * 23 21 19 27 27 C 1.38238 * 119.94463 * 145.80527 * 14 13 11 28 28 C 1.52994 * 109.47629 * 120.00410 * 2 1 3 29 29 H 1.09007 * 109.47394 * 299.99187 * 1 2 3 30 30 H 1.08998 * 109.47689 * 59.99514 * 1 2 3 31 31 H 1.09010 * 109.47435 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47414 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47166 * 300.00806 * 3 2 1 34 34 H 1.09002 * 109.47079 * 60.00382 * 3 2 1 35 35 H 1.09007 * 109.46818 * 59.99670 * 4 2 1 36 36 H 1.08997 * 109.46892 * 300.00290 * 4 2 1 37 37 H 1.08997 * 109.47642 * 300.00175 * 5 4 2 38 38 H 1.08996 * 109.47300 * 180.02562 * 5 4 2 39 39 H 1.09004 * 109.47357 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.46976 * 60.00069 * 6 5 4 41 41 H 1.08994 * 109.47247 * 185.00066 * 9 7 6 42 42 H 1.09000 * 109.46979 * 305.00266 * 9 7 6 43 43 H 0.96998 * 120.00315 * 0.02562 * 10 9 7 44 44 H 0.96999 * 119.99641 * 354.85853 * 13 11 10 45 45 H 1.08001 * 119.78404 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.83858 * 180.27715 * 16 15 14 47 47 H 1.08003 * 120.05832 * 179.71990 * 17 16 15 48 48 H 0.97002 * 119.99567 * 180.02562 * 22 21 19 49 49 H 1.07994 * 120.15918 * 0.02562 * 27 14 13 50 50 H 1.09002 * 109.47359 * 59.99882 * 28 2 1 51 51 H 1.09000 * 109.47342 * 300.00315 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9334 0.3073 1.2486 9 6 4.0805 -1.4418 2.4980 10 7 5.5405 -1.3385 2.5596 11 6 6.2136 -1.9033 3.5817 12 8 5.6089 -2.4990 4.4523 13 7 7.5567 -1.8079 3.6386 14 6 8.2466 -2.2995 4.7527 15 6 7.6713 -2.2177 6.0185 16 6 8.3430 -2.7056 7.1271 17 6 9.5924 -3.2676 6.9910 18 6 10.1885 -3.3523 5.7188 19 6 11.4713 -3.9287 5.5711 20 1 11.8268 -4.6476 6.2945 21 6 12.2800 -3.5676 4.4878 22 7 12.0132 -2.4842 3.8047 23 14 13.7405 -4.6327 4.0167 24 1 13.3088 -5.6579 3.0331 25 1 14.7989 -3.7830 3.4139 26 1 14.2753 -5.3037 5.2288 27 6 9.5003 -2.8604 4.5957 28 6 2.0400 -0.7213 1.2491 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -0.2073 -2.1393 36 1 1.6766 -1.7488 -1.2494 37 1 3.9329 0.3071 -1.2499 38 1 3.9332 -1.2340 -2.1399 39 1 5.1705 -1.4409 -0.0005 40 1 3.7175 -2.4694 -0.0004 41 1 3.6459 -0.9824 3.3857 42 1 3.7921 -2.4921 2.4543 43 1 6.0228 -0.8630 1.8652 44 1 8.0452 -1.3983 2.9075 45 1 6.6933 -1.7748 6.1358 46 1 7.8861 -2.6413 8.1035 47 1 10.1143 -3.6427 7.8590 48 1 12.5736 -2.2341 3.0535 49 1 9.9491 -2.9199 3.6152 50 1 1.6767 -1.7490 1.2491 51 1 1.6767 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310751521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:20 Heat of formation + Delta-G solvation = -43.832122 kcal Electronic energy + Delta-G solvation = -27912.233876 eV Core-core repulsion = 24195.594495 eV Total energy + Delta-G solvation = -3716.639380 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -40.28664 -39.54588 -37.34845 -35.36732 -34.12366 -33.29960 -32.90750 -31.42961 -29.47450 -28.29171 -27.66773 -26.65032 -25.63648 -25.16940 -22.34608 -21.58235 -21.07502 -20.66378 -19.82558 -18.70538 -17.97919 -17.34151 -16.12484 -15.64322 -15.38700 -15.21493 -14.95841 -14.74250 -14.49716 -14.24421 -14.20345 -13.91889 -13.76200 -13.19130 -13.02427 -12.82587 -12.64862 -12.34544 -12.22086 -12.16032 -12.05379 -11.74656 -11.59719 -11.55456 -11.24134 -11.21278 -11.12448 -11.11017 -10.68929 -10.60989 -10.47023 -10.32465 -10.22320 -10.01444 -9.67825 -9.49824 -9.19996 -8.93899 -8.82173 -7.32254 -6.93629 -6.63445 -4.32750 2.76321 2.93681 3.08837 3.11956 3.12718 3.27818 3.77667 3.96121 4.27716 4.32045 4.37958 4.65463 4.69731 4.71148 4.86075 4.95752 5.02884 5.06457 5.19664 5.26190 5.35118 5.36012 5.42208 5.53735 5.60830 5.64477 5.70499 5.71315 5.73532 5.76273 5.82213 5.91660 5.95950 6.03514 6.06345 6.10368 6.27325 6.32124 6.64761 6.74669 6.76864 6.87310 7.05488 7.10774 7.27117 7.44950 7.70446 7.89750 8.03900 8.08935 8.32328 8.52916 8.65717 8.93633 8.97310 9.13184 10.22953 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002212 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.442745 B =12654.044943 C =13718.429456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.100 4.100 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.750 5.750 11 C 0.699 3.301 12 O -0.576 6.576 13 N -0.679 5.679 14 C 0.165 3.835 15 C -0.225 4.225 16 C -0.087 4.087 17 C -0.230 4.230 18 C 0.120 3.880 19 C -0.463 4.463 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.801 5.801 23 Si 0.907 3.093 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.184 4.184 28 C -0.100 4.100 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.392 0.608 44 H 0.397 0.603 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.093 0.907 48 H 0.278 0.722 49 H 0.122 0.878 50 H 0.066 0.934 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.044 7.225 -13.184 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.118 4.118 8 H 0.098 0.902 9 C 0.021 3.979 10 N -0.408 5.408 11 C 0.399 3.601 12 O -0.452 6.452 13 N -0.326 5.326 14 C 0.072 3.928 15 C -0.247 4.247 16 C -0.106 4.106 17 C -0.250 4.250 18 C 0.117 3.883 19 C -0.494 4.494 20 H 0.096 0.904 21 C -0.140 4.140 22 N -0.427 5.427 23 Si 0.732 3.268 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.206 4.206 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.226 0.774 44 H 0.231 0.769 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.088 0.912 49 H 0.140 0.860 50 H 0.085 0.915 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.551 6.837 -12.574 22.647 hybrid contribution 1.180 0.042 -1.019 1.560 sum -16.371 6.879 -13.593 22.362 Atomic orbital electron populations 1.21866 0.94650 1.01738 1.01657 1.20514 0.95124 0.95551 0.95210 1.21985 1.01558 0.95229 1.01500 1.21597 0.95607 1.00368 0.96977 1.21581 0.95617 1.00914 0.97789 1.21606 1.00432 0.99538 0.93682 1.21462 0.96084 1.00145 0.94138 0.90241 1.21165 0.78891 1.00638 0.97236 1.45141 1.07419 1.60724 1.27478 1.15988 0.81960 0.79877 0.82272 1.90925 1.67732 1.46761 1.39806 1.42624 1.04690 1.62948 1.22290 1.17402 0.92377 0.98332 0.84683 1.20326 1.01155 1.11961 0.91210 1.20415 0.94950 0.98910 0.96276 1.21023 0.97236 1.10127 0.96584 1.17352 0.92099 0.88901 0.89915 1.19529 0.99247 1.22514 1.08068 0.90402 1.25864 0.98952 0.94086 0.95122 1.69825 1.36946 1.19471 1.16454 0.86333 0.80307 0.80518 0.79642 1.19407 1.20440 1.18660 1.21039 0.93490 1.06082 0.99977 1.21560 0.93936 1.00905 0.97395 0.92625 0.92792 0.92679 0.91945 0.92951 0.92748 0.92224 0.91993 0.91688 0.92094 0.91859 0.91692 0.91843 0.91842 0.77411 0.76877 0.88052 0.89102 0.88920 0.91158 0.86044 0.91545 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.47 37.15 0.31 -0.55 16 2 C -0.06 -0.42 0.77 -154.51 -0.12 -0.54 16 3 C -0.15 -0.94 7.78 37.16 0.29 -0.65 16 4 C -0.11 -0.71 4.73 -26.73 -0.13 -0.84 16 5 C -0.12 -0.84 5.65 -26.73 -0.15 -0.99 16 6 C -0.12 -0.92 5.08 -26.73 -0.14 -1.05 16 7 C -0.10 -0.82 1.95 -90.60 -0.18 -1.00 16 8 H 0.08 0.64 6.43 -51.93 -0.33 0.30 16 9 C 0.15 1.69 5.06 -4.04 -0.02 1.67 16 10 N -0.75 -9.99 5.29 -65.22 -0.34 -10.33 16 11 C 0.70 13.16 8.29 -86.91 -0.72 12.44 16 12 O -0.58 -13.23 14.09 5.29 0.07 -13.15 16 13 N -0.68 -13.29 5.34 -14.27 -0.08 -13.36 16 14 C 0.16 3.97 6.25 -83.76 -0.52 3.45 16 15 C -0.23 -5.56 8.66 -39.10 -0.34 -5.89 16 16 C -0.09 -2.09 10.02 -39.69 -0.40 -2.49 16 17 C -0.23 -5.84 9.79 -38.84 -0.38 -6.22 16 18 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 19 C -0.46 -12.38 9.05 -37.74 -0.34 -12.72 16 20 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 21 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 22 N -0.80 -20.31 10.94 55.55 0.61 -19.70 16 23 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.18 -4.78 8.60 -38.69 -0.33 -5.11 16 28 C -0.10 -0.75 4.01 -26.71 -0.11 -0.86 16 29 H 0.05 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.06 0.41 4.81 -51.93 -0.25 0.17 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.52 7.18 -51.93 -0.37 0.15 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.39 4.11 7.67 -40.82 -0.31 3.80 16 44 H 0.40 6.54 8.83 -40.82 -0.36 6.18 16 45 H 0.10 2.50 6.48 -52.49 -0.34 2.16 16 46 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 47 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 48 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 49 H 0.12 3.18 6.17 -52.49 -0.32 2.86 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -30.59 393.60 -11.31 -41.90 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -8.52 Total: 11.92 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.95 Total: -16.89 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: 0.19 Total: -43.40 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.07 Total: -13.15 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.59 -11.31 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.933 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds