Wall clock time and date at job start Tue Mar 31 2020 15:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47261 * 2 1 4 4 C 1.53007 * 109.47162 * 240.00384 * 2 1 3 5 5 C 1.52991 * 109.47349 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47137 * 60.00142 * 5 4 2 7 7 C 1.53001 * 109.47086 * 299.99934 * 6 5 4 8 8 H 1.09002 * 109.46978 * 300.00253 * 7 6 5 9 9 C 1.53001 * 109.47387 * 179.97438 * 7 6 5 10 10 N 1.46502 * 109.46624 * 64.99631 * 9 7 6 11 11 C 1.34785 * 119.99761 * 179.97438 * 10 9 7 12 12 O 1.21590 * 119.99670 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.39952 * 120.00129 * 174.85166 * 13 11 10 15 15 C 1.39285 * 119.94812 * 325.52938 * 14 13 11 16 16 C 1.38491 * 120.42966 * 179.75814 * 15 14 13 17 17 C 1.37677 * 120.31851 * 0.52013 * 16 15 14 18 18 C 1.40745 * 119.88583 * 359.73850 * 17 16 15 19 19 C 1.41405 * 120.21013 * 180.02562 * 18 17 16 20 20 H 1.08006 * 119.99970 * 25.14043 * 19 18 17 21 21 C 1.39927 * 120.00049 * 205.14874 * 19 18 17 22 22 N 1.30832 * 120.00003 * 16.77621 * 21 19 18 23 23 Si 1.86797 * 120.00138 * 196.78617 * 21 19 18 24 24 H 1.48498 * 109.47446 * 89.99575 * 23 21 19 25 25 H 1.48507 * 109.47293 * 209.99596 * 23 21 19 26 26 H 1.48508 * 109.47124 * 329.99267 * 23 21 19 27 27 C 1.38238 * 119.94463 * 145.80527 * 14 13 11 28 28 C 1.52994 * 109.47629 * 120.00410 * 2 1 3 29 29 H 1.09007 * 109.47394 * 299.99187 * 1 2 3 30 30 H 1.08998 * 109.47689 * 59.99514 * 1 2 3 31 31 H 1.09010 * 109.47435 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47414 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47166 * 300.00806 * 3 2 1 34 34 H 1.09002 * 109.47079 * 60.00382 * 3 2 1 35 35 H 1.09007 * 109.46818 * 59.99670 * 4 2 1 36 36 H 1.08997 * 109.46892 * 300.00290 * 4 2 1 37 37 H 1.08997 * 109.47642 * 300.00175 * 5 4 2 38 38 H 1.08996 * 109.47300 * 180.02562 * 5 4 2 39 39 H 1.09004 * 109.47357 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.46976 * 60.00069 * 6 5 4 41 41 H 1.08994 * 109.47247 * 185.00066 * 9 7 6 42 42 H 1.09000 * 109.46979 * 305.00266 * 9 7 6 43 43 H 0.96998 * 120.00315 * 0.02562 * 10 9 7 44 44 H 0.96999 * 119.99641 * 354.85853 * 13 11 10 45 45 H 1.08001 * 119.78404 * 0.02562 * 15 14 13 46 46 H 1.08000 * 119.83858 * 180.27715 * 16 15 14 47 47 H 1.08003 * 120.05832 * 179.71990 * 17 16 15 48 48 H 0.97002 * 119.99567 * 180.02562 * 22 21 19 49 49 H 1.07994 * 120.15918 * 0.02562 * 27 14 13 50 50 H 1.09002 * 109.47359 * 59.99882 * 28 2 1 51 51 H 1.09000 * 109.47342 * 300.00315 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5699 -0.7207 -1.2497 6 6 4.0804 -1.4417 -0.0005 7 6 3.5705 -0.7205 1.2488 8 1 3.9334 0.3073 1.2486 9 6 4.0805 -1.4418 2.4980 10 7 5.5405 -1.3385 2.5596 11 6 6.2136 -1.9033 3.5817 12 8 5.6089 -2.4990 4.4523 13 7 7.5567 -1.8079 3.6386 14 6 8.2466 -2.2995 4.7527 15 6 7.6713 -2.2177 6.0185 16 6 8.3430 -2.7056 7.1271 17 6 9.5924 -3.2676 6.9910 18 6 10.1885 -3.3523 5.7188 19 6 11.4713 -3.9287 5.5711 20 1 11.8268 -4.6476 6.2945 21 6 12.2800 -3.5676 4.4878 22 7 12.0132 -2.4842 3.8047 23 14 13.7405 -4.6327 4.0167 24 1 13.3088 -5.6579 3.0331 25 1 14.7989 -3.7830 3.4139 26 1 14.2753 -5.3037 5.2288 27 6 9.5003 -2.8604 4.5957 28 6 2.0400 -0.7213 1.2491 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -0.2073 -2.1393 36 1 1.6766 -1.7488 -1.2494 37 1 3.9329 0.3071 -1.2499 38 1 3.9332 -1.2340 -2.1399 39 1 5.1705 -1.4409 -0.0005 40 1 3.7175 -2.4694 -0.0004 41 1 3.6459 -0.9824 3.3857 42 1 3.7921 -2.4921 2.4543 43 1 6.0228 -0.8630 1.8652 44 1 8.0452 -1.3983 2.9075 45 1 6.6933 -1.7748 6.1358 46 1 7.8861 -2.6413 8.1035 47 1 10.1143 -3.6427 7.8590 48 1 12.5736 -2.2341 3.0535 49 1 9.9491 -2.9199 3.6152 50 1 1.6767 -1.7490 1.2491 51 1 1.6767 -0.2076 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310751521.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:17 Heat of formation + Delta-G solvation = -59.676690 kcal Electronic energy + Delta-G solvation = -27912.920948 eV Core-core repulsion = 24195.594495 eV Total energy + Delta-G solvation = -3717.326452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.50594 -40.55506 -39.12525 -36.52005 -35.85833 -35.08614 -33.75050 -32.28264 -31.41817 -30.01381 -28.16447 -27.23292 -27.15549 -26.62870 -23.23548 -22.98123 -22.88951 -21.59039 -21.39600 -19.54338 -19.30734 -19.08473 -17.75592 -16.93414 -16.68983 -16.42061 -16.14063 -16.08120 -15.66091 -15.40724 -15.25733 -14.88957 -14.70683 -14.59301 -14.52423 -14.15763 -13.75147 -13.58513 -13.42458 -13.08032 -12.90463 -12.81822 -12.73620 -12.67352 -12.57321 -12.33449 -12.30286 -12.18680 -11.83586 -11.80169 -11.75745 -11.55989 -11.27288 -11.09058 -11.05384 -10.90817 -10.82947 -10.74602 -10.09607 -9.30846 -8.80614 -8.50818 -6.33371 0.91226 1.07427 1.41177 1.53366 1.54126 1.72701 2.17908 2.23907 2.79016 3.30590 3.61759 3.72519 3.74840 3.78967 4.07172 4.18810 4.32141 4.41634 4.46333 4.49274 4.56196 4.62267 4.70121 4.75520 4.76690 4.82307 4.87559 4.89366 4.94619 5.03772 5.11018 5.13161 5.14580 5.17897 5.19653 5.22465 5.24807 5.30835 5.32473 5.36730 5.41534 5.46100 5.53561 5.56029 5.70383 5.78155 5.83736 6.02146 6.11202 6.19783 6.40542 6.70024 6.95895 6.99405 7.10905 7.58938 8.36384 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.019380 B = 0.002212 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.442745 B =12654.044943 C =13718.429456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.115 4.115 7 C -0.086 4.086 8 H 0.089 0.911 9 C 0.145 3.855 10 N -0.726 5.726 11 C 0.697 3.303 12 O -0.618 6.618 13 N -0.674 5.674 14 C 0.171 3.829 15 C -0.240 4.240 16 C -0.085 4.085 17 C -0.250 4.250 18 C 0.092 3.908 19 C -0.498 4.498 20 H 0.076 0.924 21 C 0.037 3.963 22 N -0.822 5.822 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.266 1.266 26 H -0.261 1.261 27 C -0.204 4.204 28 C -0.099 4.099 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.410 0.590 44 H 0.412 0.588 45 H 0.101 0.899 46 H 0.119 0.881 47 H 0.101 0.899 48 H 0.288 0.712 49 H 0.114 0.886 50 H 0.062 0.938 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 7.878 -14.889 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.155 4.155 6 C -0.152 4.152 7 C -0.105 4.105 8 H 0.107 0.893 9 C 0.021 3.979 10 N -0.383 5.383 11 C 0.397 3.603 12 O -0.498 6.498 13 N -0.322 5.322 14 C 0.077 3.923 15 C -0.261 4.261 16 C -0.103 4.103 17 C -0.270 4.270 18 C 0.089 3.911 19 C -0.527 4.527 20 H 0.094 0.906 21 C -0.178 4.178 22 N -0.447 5.447 23 Si 0.803 3.197 24 H -0.189 1.189 25 H -0.191 1.191 26 H -0.185 1.185 27 C -0.226 4.226 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.246 0.754 44 H 0.249 0.751 45 H 0.119 0.881 46 H 0.137 0.863 47 H 0.119 0.881 48 H 0.099 0.901 49 H 0.132 0.868 50 H 0.080 0.920 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.640 7.538 -14.337 23.949 hybrid contribution 1.117 -0.110 -0.508 1.232 sum -16.523 7.428 -14.844 23.421 Atomic orbital electron populations 1.21856 0.94205 1.01793 1.01982 1.20491 0.95473 0.95578 0.94574 1.21981 1.01493 0.94976 1.01770 1.21592 0.95358 1.00267 0.97221 1.21555 0.95798 1.01062 0.97130 1.21601 1.00340 0.99216 0.94079 1.21373 0.96578 1.00049 0.92464 0.89287 1.21310 0.77463 1.00397 0.98739 1.44977 1.08077 1.59089 1.26139 1.16150 0.81517 0.79770 0.82846 1.90894 1.68403 1.48708 1.41782 1.42463 1.05140 1.62841 1.21716 1.17436 0.91946 0.97047 0.85910 1.20478 1.01246 1.12637 0.91763 1.20724 0.94434 0.97636 0.97542 1.21197 0.98062 1.11177 0.96534 1.17768 0.92888 0.89491 0.90935 1.19775 0.99911 1.23450 1.09573 0.90632 1.26695 1.01652 0.95033 0.94371 1.69855 1.38074 1.20229 1.16590 0.85213 0.76689 0.78603 0.79239 1.18888 1.19072 1.18478 1.20983 0.94419 1.07769 0.99430 1.21560 0.93172 1.00912 0.98091 0.92648 0.92143 0.92788 0.91997 0.92337 0.92889 0.91438 0.92362 0.91087 0.91755 0.91977 0.92542 0.92690 0.93064 0.75363 0.75127 0.88130 0.86334 0.88055 0.90102 0.86797 0.91961 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.47 71.98 0.61 -0.89 16 2 C -0.06 -0.70 0.77 -52.18 -0.04 -0.74 16 3 C -0.15 -1.57 7.78 71.98 0.56 -1.01 16 4 C -0.11 -1.20 4.73 30.59 0.14 -1.05 16 5 C -0.12 -1.38 5.65 30.59 0.17 -1.21 16 6 C -0.11 -1.65 5.08 30.60 0.16 -1.50 16 7 C -0.09 -1.30 1.95 -10.78 -0.02 -1.32 16 8 H 0.09 1.23 6.43 -2.39 -0.02 1.21 16 9 C 0.14 3.27 5.06 86.38 0.44 3.71 16 10 N -0.73 -18.60 5.29 -478.52 -2.53 -21.13 16 11 C 0.70 26.07 8.29 179.05 1.48 27.56 16 12 O -0.62 -28.65 14.09 -4.00 -0.06 -28.71 16 13 N -0.67 -26.26 5.34 -317.32 -1.69 -27.96 16 14 C 0.17 8.33 6.25 38.10 0.24 8.57 16 15 C -0.24 -11.93 8.66 22.58 0.20 -11.73 16 16 C -0.08 -4.10 10.02 22.20 0.22 -3.88 16 17 C -0.25 -12.92 9.79 22.75 0.22 -12.70 16 18 C 0.09 5.11 5.57 -21.31 -0.12 4.99 16 19 C -0.50 -27.05 9.05 23.46 0.21 -26.84 16 20 H 0.08 3.99 7.90 -2.91 -0.02 3.96 16 21 C 0.04 1.87 5.16 85.25 0.44 2.31 16 22 N -0.82 -41.60 10.94 21.82 0.24 -41.36 16 23 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 H -0.27 -9.65 7.11 99.48 0.71 -8.95 16 26 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 27 C -0.20 -10.81 8.60 22.85 0.20 -10.62 16 28 C -0.10 -1.37 4.01 30.61 0.12 -1.25 16 29 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.06 0.67 4.81 -2.39 -0.01 0.66 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.77 6.43 -2.39 -0.02 0.75 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.06 0.91 7.18 -2.39 -0.02 0.89 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.41 7.85 7.67 -92.71 -0.71 7.14 16 44 H 0.41 13.30 8.83 -92.71 -0.82 12.48 16 45 H 0.10 4.99 6.48 -2.91 -0.02 4.97 16 46 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 47 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 48 H 0.29 13.06 8.30 -92.71 -0.77 12.30 16 49 H 0.11 6.10 6.17 -2.91 -0.02 6.08 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -66.42 393.60 2.62 -63.79 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -0.60 Total: 43.07 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 5.23 Total: -27.61 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -3.99 Total: -90.46 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.06 Total: -28.71 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -66.42 2.62 -63.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751521.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.117 kcal (2) G-P(sol) polarization free energy of solvation -66.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds