Wall clock time and date at job start Tue Mar 31 2020 15:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47168 * 119.99824 * 2 1 3 5 5 C 1.52996 * 109.47168 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47313 * 299.99657 * 5 4 2 7 7 C 1.53001 * 109.46723 * 60.00070 * 6 5 4 8 8 H 1.09004 * 109.47117 * 60.00010 * 7 6 5 9 9 C 1.52997 * 109.47213 * 179.97438 * 7 6 5 10 10 N 1.46503 * 109.47294 * 295.00475 * 9 7 6 11 11 C 1.34779 * 119.99802 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99932 * 180.02562 * 11 10 9 14 14 C 1.39955 * 120.00137 * 174.85380 * 13 11 10 15 15 C 1.39282 * 119.94620 * 325.52201 * 14 13 11 16 16 C 1.38493 * 120.42692 * 179.76751 * 15 14 13 17 17 C 1.37674 * 120.32155 * 0.50668 * 16 15 14 18 18 C 1.40748 * 119.88325 * 359.74961 * 17 16 15 19 19 C 1.41405 * 120.20919 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99818 * 205.20400 * 19 18 17 21 21 C 1.39937 * 120.00112 * 25.19612 * 19 18 17 22 22 N 1.30831 * 119.99956 * 16.78652 * 21 19 18 23 23 Si 1.86798 * 120.00134 * 196.77691 * 21 19 18 24 24 H 1.48509 * 109.46870 * 60.00567 * 23 21 19 25 25 H 1.48496 * 109.47008 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47525 * 300.00618 * 23 21 19 27 27 C 1.38237 * 119.94523 * 145.79417 * 14 13 11 28 28 C 1.52999 * 109.47018 * 239.99724 * 2 1 3 29 29 H 1.09001 * 109.47261 * 300.00664 * 1 2 3 30 30 H 1.09005 * 109.46945 * 60.00108 * 1 2 3 31 31 H 1.08991 * 109.47717 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47531 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47024 * 299.99843 * 3 2 1 34 34 H 1.09001 * 109.47496 * 59.99480 * 3 2 1 35 35 H 1.09001 * 109.46855 * 59.99287 * 4 2 1 36 36 H 1.09000 * 109.47317 * 300.00193 * 4 2 1 37 37 H 1.08993 * 109.47419 * 60.00366 * 5 4 2 38 38 H 1.09005 * 109.46945 * 180.02562 * 5 4 2 39 39 H 1.08995 * 109.47306 * 180.02562 * 6 5 4 40 40 H 1.09003 * 109.47373 * 300.00753 * 6 5 4 41 41 H 1.09005 * 109.46860 * 55.00167 * 9 7 6 42 42 H 1.08997 * 109.47368 * 174.99927 * 9 7 6 43 43 H 0.96995 * 120.00075 * 359.97438 * 10 9 7 44 44 H 0.96998 * 119.99450 * 354.84830 * 13 11 10 45 45 H 1.08001 * 119.78440 * 359.97438 * 15 14 13 46 46 H 1.08004 * 119.83676 * 180.27948 * 16 15 14 47 47 H 1.08001 * 120.06189 * 179.76867 * 17 16 15 48 48 H 0.96998 * 120.00285 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.16180 * 0.02562 * 27 14 13 50 50 H 1.08996 * 109.47254 * 60.00489 * 28 2 1 51 51 H 1.08994 * 109.47349 * 299.99922 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 6 4.0815 -1.4409 -2.4980 10 7 5.5416 -1.3366 -2.5591 11 6 6.2154 -1.9015 -3.5806 12 8 5.6115 -2.4972 -4.4516 13 7 7.5586 -1.8059 -3.6365 14 6 8.2672 -2.4821 -4.6362 15 6 7.8210 -3.7220 -5.0872 16 6 8.5118 -4.3977 -6.0793 17 6 9.6541 -3.8551 -6.6236 18 6 10.1200 -2.6054 -6.1740 19 6 11.2928 -2.0420 -6.7278 20 1 11.8750 -1.3355 -6.1549 21 6 11.6990 -2.4000 -8.0182 22 7 10.8552 -2.9806 -8.8322 23 14 13.4459 -2.0486 -8.5787 24 1 14.4025 -2.7583 -7.6916 25 1 13.6219 -2.5205 -9.9756 26 1 13.7021 -0.5873 -8.5143 27 6 9.4121 -1.9209 -5.1703 28 6 2.0399 -0.7213 -1.2492 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6765 -1.7488 1.2493 36 1 1.6766 -0.2074 2.1393 37 1 3.9329 0.3071 1.2498 38 1 3.9333 -1.2349 2.1394 39 1 5.1705 -1.4416 0.0009 40 1 3.7175 -2.4694 0.0002 41 1 3.7939 -2.4914 -2.4548 42 1 3.6470 -0.9815 -3.3858 43 1 6.0233 -0.8610 -1.8644 44 1 8.0341 -1.2684 -2.9839 45 1 6.9286 -4.1579 -4.6628 46 1 8.1548 -5.3565 -6.4251 47 1 10.1917 -4.3874 -7.3944 48 1 11.1366 -3.2284 -9.7268 49 1 9.7616 -0.9617 -4.8178 50 1 1.6767 -0.2075 -2.1392 51 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001310751522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:25 Heat of formation + Delta-G solvation = -43.025268 kcal Electronic energy + Delta-G solvation = -27689.682066 eV Core-core repulsion = 23973.077673 eV Total energy + Delta-G solvation = -3716.604393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.32042 -39.58534 -37.34906 -35.41043 -34.27393 -33.20197 -32.82481 -31.42339 -29.76699 -28.13141 -27.68520 -26.67379 -25.65011 -25.15267 -22.37683 -21.69213 -20.88670 -20.68694 -19.99709 -18.72812 -17.92033 -17.56609 -15.94935 -15.69939 -15.38851 -15.19367 -15.02868 -14.75604 -14.62646 -14.25063 -14.21139 -13.86177 -13.81655 -13.17062 -13.07404 -12.84592 -12.73355 -12.27649 -12.21208 -12.13755 -12.07723 -11.77310 -11.62609 -11.57550 -11.26520 -11.21955 -11.11876 -11.08915 -10.85265 -10.50306 -10.47192 -10.35231 -10.24706 -10.18038 -9.56110 -9.49836 -9.16917 -8.90428 -8.85593 -7.40094 -6.83696 -6.66345 -4.30858 2.82042 2.88607 3.07481 3.09959 3.12849 3.27760 3.76718 3.97325 4.25100 4.29547 4.35277 4.60959 4.66560 4.71954 4.82912 4.92951 5.00008 5.03750 5.16973 5.23602 5.32675 5.34164 5.40165 5.51794 5.58479 5.62119 5.67795 5.69937 5.73522 5.74989 5.79694 5.88713 5.93103 6.01237 6.03667 6.08042 6.24723 6.33814 6.60528 6.65541 6.80949 6.92506 7.00098 7.09328 7.29466 7.43872 7.68912 7.87903 8.08506 8.14867 8.31054 8.48682 8.68262 8.93819 8.98296 9.10182 10.26239 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.001888 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.025812 B =14825.030650 C =15041.613116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.146 4.146 4 C -0.108 4.108 5 C -0.122 4.122 6 C -0.114 4.114 7 C -0.100 4.100 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.750 5.750 11 C 0.698 3.302 12 O -0.572 6.572 13 N -0.682 5.682 14 C 0.172 3.828 15 C -0.226 4.226 16 C -0.095 4.095 17 C -0.170 4.170 18 C 0.123 3.877 19 C -0.466 4.466 20 H 0.076 0.924 21 C 0.076 3.924 22 N -0.795 5.795 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.267 1.267 27 C -0.246 4.246 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.392 0.608 44 H 0.395 0.605 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.119 0.881 48 H 0.280 0.720 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.140 6.471 18.728 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.118 4.118 8 H 0.097 0.903 9 C 0.020 3.980 10 N -0.408 5.408 11 C 0.399 3.601 12 O -0.448 6.448 13 N -0.328 5.328 14 C 0.079 3.921 15 C -0.247 4.247 16 C -0.114 4.114 17 C -0.190 4.190 18 C 0.120 3.880 19 C -0.496 4.496 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.420 5.420 23 Si 0.733 3.267 24 H -0.189 1.189 25 H -0.204 1.204 26 H -0.191 1.191 27 C -0.268 4.268 28 C -0.138 4.138 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.225 0.775 44 H 0.228 0.772 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.136 0.864 48 H 0.091 0.909 49 H 0.112 0.888 50 H 0.084 0.916 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.773 5.824 17.683 24.400 hybrid contribution 1.151 0.735 0.257 1.390 sum -14.621 6.559 17.939 24.055 Atomic orbital electron populations 1.21865 0.94628 1.01751 1.01677 1.20516 0.95151 0.95548 0.95191 1.21985 1.01520 0.95234 1.01524 1.21596 0.95582 1.00382 0.96994 1.21583 0.95654 1.00892 0.97766 1.21600 1.00357 0.99549 0.93693 1.21463 0.96127 1.00131 0.94109 0.90254 1.21176 0.78833 1.00682 0.97296 1.45138 1.07493 1.61032 1.27091 1.15981 0.81857 0.80108 0.82198 1.90946 1.67619 1.46920 1.39272 1.42619 1.04710 1.52501 1.32974 1.17222 0.92797 0.91394 0.90638 1.20319 1.03425 0.95840 1.05104 1.20582 0.96038 0.98229 0.96567 1.21353 0.97948 0.96513 1.03161 1.17351 0.91223 0.90322 0.89135 1.19459 1.07517 1.23502 0.99096 0.90595 1.25885 0.98672 0.93180 0.96418 1.69831 1.34825 1.30871 1.06502 0.86377 0.82687 0.79688 0.77960 1.18889 1.20410 1.19131 1.20672 0.99253 1.00374 1.06500 1.21561 0.93897 1.00929 0.97425 0.92789 0.92608 0.92670 0.91973 0.92731 0.92947 0.91987 0.92215 0.91691 0.92108 0.91913 0.91696 0.91796 0.91795 0.77480 0.77183 0.88130 0.89120 0.86358 0.90894 0.88808 0.91550 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.47 37.16 0.31 -0.53 16 2 C -0.06 -0.41 0.77 -154.51 -0.12 -0.52 16 3 C -0.15 -0.90 7.78 37.16 0.29 -0.61 16 4 C -0.11 -0.67 4.73 -26.73 -0.13 -0.80 16 5 C -0.12 -0.77 5.65 -26.73 -0.15 -0.92 16 6 C -0.11 -0.84 5.08 -26.73 -0.14 -0.98 16 7 C -0.10 -0.78 1.95 -90.59 -0.18 -0.96 16 8 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16 9 C 0.14 1.63 5.07 -4.04 -0.02 1.61 16 10 N -0.75 -9.53 5.29 -65.22 -0.34 -9.88 16 11 C 0.70 12.80 8.29 -86.92 -0.72 12.08 16 12 O -0.57 -13.14 14.09 5.29 0.07 -13.07 16 13 N -0.68 -12.57 5.34 -14.27 -0.08 -12.65 16 14 C 0.17 4.01 6.25 -83.76 -0.52 3.49 16 15 C -0.23 -5.58 8.66 -39.10 -0.34 -5.92 16 16 C -0.10 -2.39 10.02 -39.69 -0.40 -2.79 16 17 C -0.17 -4.57 8.69 -38.84 -0.34 -4.91 16 18 C 0.12 3.33 5.57 -106.85 -0.59 2.74 16 19 C -0.47 -12.46 9.05 -37.74 -0.34 -12.80 16 20 H 0.08 1.93 7.90 -52.49 -0.41 1.52 16 21 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 22 N -0.79 -21.05 10.94 55.55 0.61 -20.44 16 23 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 16 24 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 25 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 27 C -0.25 -6.08 9.70 -38.69 -0.38 -6.46 16 28 C -0.10 -0.73 4.02 -26.70 -0.11 -0.83 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.39 3.76 7.67 -40.82 -0.31 3.45 16 44 H 0.39 5.71 8.83 -40.82 -0.36 5.35 16 45 H 0.10 2.49 6.48 -52.49 -0.34 2.15 16 46 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 47 H 0.12 3.25 6.16 -52.49 -0.32 2.93 16 48 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 49 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 393.61 15.07 5.93 5.93 Total: -1.00 -31.47 393.61 -11.31 -42.78 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.52 Total: 10.76 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.95 Total: -17.27 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.19 Total: -42.96 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.07 Total: -13.07 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.47 -11.31 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.248 kcal (2) G-P(sol) polarization free energy of solvation -31.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds