Wall clock time and date at job start Tue Mar 31 2020 15:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.53001 * 109.47168 * 119.99824 * 2 1 3 5 5 C 1.52996 * 109.47168 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47313 * 299.99657 * 5 4 2 7 7 C 1.53001 * 109.46723 * 60.00070 * 6 5 4 8 8 H 1.09004 * 109.47117 * 60.00010 * 7 6 5 9 9 C 1.52997 * 109.47213 * 179.97438 * 7 6 5 10 10 N 1.46503 * 109.47294 * 295.00475 * 9 7 6 11 11 C 1.34779 * 119.99802 * 179.97438 * 10 9 7 12 12 O 1.21584 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99932 * 180.02562 * 11 10 9 14 14 C 1.39955 * 120.00137 * 174.85380 * 13 11 10 15 15 C 1.39282 * 119.94620 * 325.52201 * 14 13 11 16 16 C 1.38493 * 120.42692 * 179.76751 * 15 14 13 17 17 C 1.37674 * 120.32155 * 0.50668 * 16 15 14 18 18 C 1.40748 * 119.88325 * 359.74961 * 17 16 15 19 19 C 1.41405 * 120.20919 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99818 * 205.20400 * 19 18 17 21 21 C 1.39937 * 120.00112 * 25.19612 * 19 18 17 22 22 N 1.30831 * 119.99956 * 16.78652 * 21 19 18 23 23 Si 1.86798 * 120.00134 * 196.77691 * 21 19 18 24 24 H 1.48509 * 109.46870 * 60.00567 * 23 21 19 25 25 H 1.48496 * 109.47008 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47525 * 300.00618 * 23 21 19 27 27 C 1.38237 * 119.94523 * 145.79417 * 14 13 11 28 28 C 1.52999 * 109.47018 * 239.99724 * 2 1 3 29 29 H 1.09001 * 109.47261 * 300.00664 * 1 2 3 30 30 H 1.09005 * 109.46945 * 60.00108 * 1 2 3 31 31 H 1.08991 * 109.47717 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47531 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47024 * 299.99843 * 3 2 1 34 34 H 1.09001 * 109.47496 * 59.99480 * 3 2 1 35 35 H 1.09001 * 109.46855 * 59.99287 * 4 2 1 36 36 H 1.09000 * 109.47317 * 300.00193 * 4 2 1 37 37 H 1.08993 * 109.47419 * 60.00366 * 5 4 2 38 38 H 1.09005 * 109.46945 * 180.02562 * 5 4 2 39 39 H 1.08995 * 109.47306 * 180.02562 * 6 5 4 40 40 H 1.09003 * 109.47373 * 300.00753 * 6 5 4 41 41 H 1.09005 * 109.46860 * 55.00167 * 9 7 6 42 42 H 1.08997 * 109.47368 * 174.99927 * 9 7 6 43 43 H 0.96995 * 120.00075 * 359.97438 * 10 9 7 44 44 H 0.96998 * 119.99450 * 354.84830 * 13 11 10 45 45 H 1.08001 * 119.78440 * 359.97438 * 15 14 13 46 46 H 1.08004 * 119.83676 * 180.27948 * 16 15 14 47 47 H 1.08001 * 120.06189 * 179.76867 * 17 16 15 48 48 H 0.96998 * 120.00285 * 179.97438 * 22 21 19 49 49 H 1.08000 * 120.16180 * 0.02562 * 27 14 13 50 50 H 1.08996 * 109.47254 * 60.00489 * 28 2 1 51 51 H 1.08994 * 109.47349 * 299.99922 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2496 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 6 4.0815 -1.4409 -2.4980 10 7 5.5416 -1.3366 -2.5591 11 6 6.2154 -1.9015 -3.5806 12 8 5.6115 -2.4972 -4.4516 13 7 7.5586 -1.8059 -3.6365 14 6 8.2672 -2.4821 -4.6362 15 6 7.8210 -3.7220 -5.0872 16 6 8.5118 -4.3977 -6.0793 17 6 9.6541 -3.8551 -6.6236 18 6 10.1200 -2.6054 -6.1740 19 6 11.2928 -2.0420 -6.7278 20 1 11.8750 -1.3355 -6.1549 21 6 11.6990 -2.4000 -8.0182 22 7 10.8552 -2.9806 -8.8322 23 14 13.4459 -2.0486 -8.5787 24 1 14.4025 -2.7583 -7.6916 25 1 13.6219 -2.5205 -9.9756 26 1 13.7021 -0.5873 -8.5143 27 6 9.4121 -1.9209 -5.1703 28 6 2.0399 -0.7213 -1.2492 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0275 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6765 -1.7488 1.2493 36 1 1.6766 -0.2074 2.1393 37 1 3.9329 0.3071 1.2498 38 1 3.9333 -1.2349 2.1394 39 1 5.1705 -1.4416 0.0009 40 1 3.7175 -2.4694 0.0002 41 1 3.7939 -2.4914 -2.4548 42 1 3.6470 -0.9815 -3.3858 43 1 6.0233 -0.8610 -1.8644 44 1 8.0341 -1.2684 -2.9839 45 1 6.9286 -4.1579 -4.6628 46 1 8.1548 -5.3565 -6.4251 47 1 10.1917 -4.3874 -7.3944 48 1 11.1366 -3.2284 -9.7268 49 1 9.7616 -0.9617 -4.8178 50 1 1.6767 -0.2075 -2.1392 51 1 1.6766 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310751522.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:23 Heat of formation + Delta-G solvation = -59.912815 kcal Electronic energy + Delta-G solvation = -27690.414365 eV Core-core repulsion = 23973.077673 eV Total energy + Delta-G solvation = -3717.336692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.51598 -40.55190 -39.13255 -36.57171 -35.96983 -34.88112 -33.71957 -32.24296 -31.74802 -29.85047 -28.16276 -27.23215 -27.15711 -26.62377 -23.33082 -22.94904 -22.76522 -21.66754 -21.44342 -19.46274 -19.38314 -19.18066 -17.52880 -17.01817 -16.85150 -16.30958 -16.12240 -16.06595 -15.75536 -15.44868 -15.06017 -14.99759 -14.76398 -14.63314 -14.45557 -14.08489 -13.74876 -13.58639 -13.47307 -13.00670 -12.90520 -12.84617 -12.73321 -12.70872 -12.65377 -12.30701 -12.27564 -12.18045 -11.95619 -11.79488 -11.75214 -11.44439 -11.27393 -11.08727 -11.05016 -10.89416 -10.82176 -10.72751 -10.09515 -9.39779 -8.71474 -8.56670 -6.33620 0.96876 0.99932 1.40912 1.52536 1.56599 1.71209 2.19211 2.23828 2.79234 3.30466 3.62442 3.73247 3.74845 3.79646 4.07632 4.19094 4.33154 4.42226 4.43011 4.50034 4.56770 4.62936 4.68736 4.70632 4.77323 4.84234 4.88408 4.94965 5.03313 5.04445 5.05734 5.11357 5.14288 5.15422 5.20717 5.21909 5.25075 5.30992 5.33594 5.35175 5.42158 5.46606 5.53840 5.56387 5.71183 5.76945 5.80103 6.06820 6.10508 6.20245 6.39529 6.70242 6.94721 7.00501 7.12030 7.59741 8.36993 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.001888 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.025812 B =14825.030650 C =15041.613116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.107 4.107 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.086 4.086 8 H 0.090 0.910 9 C 0.144 3.856 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.620 6.620 13 N -0.672 5.672 14 C 0.183 3.817 15 C -0.239 4.239 16 C -0.098 4.098 17 C -0.197 4.197 18 C 0.095 3.905 19 C -0.496 4.496 20 H 0.082 0.918 21 C 0.032 3.968 22 N -0.828 5.828 23 Si 0.986 3.014 24 H -0.259 1.259 25 H -0.271 1.271 26 H -0.258 1.258 27 C -0.255 4.255 28 C -0.100 4.100 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.411 0.589 44 H 0.416 0.584 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.104 0.896 48 H 0.288 0.712 49 H 0.111 0.889 50 H 0.063 0.937 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 8.038 20.397 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.104 4.104 8 H 0.108 0.892 9 C 0.020 3.980 10 N -0.381 5.381 11 C 0.396 3.604 12 O -0.500 6.500 13 N -0.320 5.320 14 C 0.089 3.911 15 C -0.260 4.260 16 C -0.117 4.117 17 C -0.217 4.217 18 C 0.092 3.908 19 C -0.525 4.525 20 H 0.100 0.900 21 C -0.183 4.183 22 N -0.454 5.454 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.195 1.195 26 H -0.182 1.182 27 C -0.277 4.277 28 C -0.138 4.138 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.248 0.752 44 H 0.253 0.747 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.098 0.902 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.513 7.435 19.436 25.955 hybrid contribution 0.929 0.254 -0.204 0.985 sum -14.584 7.689 19.231 25.331 Atomic orbital electron populations 1.21858 0.94318 1.01764 1.01938 1.20494 0.95405 0.95616 0.94618 1.21980 1.01557 0.94938 1.01721 1.21592 0.95518 1.00225 0.97128 1.21558 0.95655 1.01112 0.97195 1.21593 1.00461 0.99162 0.93901 1.21374 0.96454 1.00108 0.92514 0.89221 1.21303 0.77589 1.00421 0.98672 1.44937 1.08029 1.59430 1.25709 1.16173 0.81594 0.79949 0.82684 1.90918 1.68489 1.49107 1.41454 1.42388 1.04911 1.52306 1.32410 1.17210 0.92292 0.90916 0.90685 1.20432 1.03442 0.96708 1.05464 1.20796 0.95511 0.98954 0.96415 1.21296 0.99121 0.97185 1.04108 1.17753 0.92078 0.90773 0.90183 1.19781 1.08127 1.24507 1.00110 0.89984 1.26835 1.02984 0.92441 0.96000 1.69904 1.36993 1.31370 1.07110 0.85197 0.76623 0.79832 0.77683 1.18278 1.19520 1.18226 1.20836 0.99637 1.00994 1.06261 1.21562 0.93336 1.00870 0.98036 0.92132 0.92760 0.92813 0.91856 0.93016 0.92333 0.92393 0.91461 0.91024 0.91643 0.91689 0.92562 0.93014 0.93021 0.75168 0.74663 0.88259 0.87468 0.87800 0.90182 0.87090 0.91847 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 8.47 71.98 0.61 -0.86 16 2 C -0.06 -0.67 0.77 -52.18 -0.04 -0.71 16 3 C -0.14 -1.48 7.78 71.98 0.56 -0.92 16 4 C -0.11 -1.11 4.73 30.59 0.14 -0.96 16 5 C -0.12 -1.22 5.65 30.59 0.17 -1.04 16 6 C -0.11 -1.46 5.08 30.59 0.16 -1.30 16 7 C -0.09 -1.20 1.95 -10.78 -0.02 -1.22 16 8 H 0.09 1.13 6.43 -2.39 -0.02 1.11 16 9 C 0.14 3.13 5.07 86.38 0.44 3.57 16 10 N -0.72 -17.26 5.29 -478.53 -2.53 -19.79 16 11 C 0.70 24.92 8.29 179.05 1.48 26.40 16 12 O -0.62 -28.66 14.09 -3.98 -0.06 -28.72 16 13 N -0.67 -23.96 5.34 -317.33 -1.69 -25.65 16 14 C 0.18 8.52 6.25 38.09 0.24 8.76 16 15 C -0.24 -11.96 8.66 22.58 0.20 -11.77 16 16 C -0.10 -5.03 10.02 22.20 0.22 -4.81 16 17 C -0.20 -10.94 8.69 22.75 0.20 -10.74 16 18 C 0.10 5.27 5.57 -21.31 -0.12 5.15 16 19 C -0.50 -26.81 9.05 23.46 0.21 -26.59 16 20 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 21 C 0.03 1.64 5.16 85.25 0.44 2.08 16 22 N -0.83 -44.56 10.94 21.82 0.24 -44.33 16 23 Si 0.99 38.33 29.59 68.60 2.03 40.36 16 24 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 26 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 27 C -0.26 -12.64 9.70 22.85 0.22 -12.41 16 28 C -0.10 -1.33 4.02 30.61 0.12 -1.21 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.63 4.81 -2.39 -0.01 0.62 16 33 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.67 6.43 -2.39 -0.02 0.65 16 38 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 0.81 7.18 -2.39 -0.02 0.79 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.41 6.79 7.67 -92.71 -0.71 6.08 16 44 H 0.42 11.11 8.83 -92.71 -0.82 10.29 16 45 H 0.10 4.97 6.48 -2.91 -0.02 4.95 16 46 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 47 H 0.10 5.96 6.16 -2.91 -0.02 5.94 16 48 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 49 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 50 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -69.26 393.61 2.63 -66.63 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: -0.60 Total: 40.10 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 5.24 Total: -28.61 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -3.99 Total: -89.77 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.06 Total: -28.72 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -69.26 2.63 -66.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310751522.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.721 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds