Wall clock time and date at job start Tue Mar 31 2020 16:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 113.01191 * 2 1 4 4 C 1.53935 * 113.73181 * 131.63381 * 2 1 3 5 5 N 1.47957 * 86.18285 * 138.08404 * 4 2 1 6 6 C 1.46899 * 111.00003 * 222.42049 * 5 4 2 7 7 C 1.50700 * 109.47134 * 268.47108 * 6 5 4 8 8 O 1.21286 * 119.99918 * 5.12015 * 7 6 5 9 9 N 1.34776 * 120.00130 * 185.12606 * 7 6 5 10 10 C 1.46494 * 120.00032 * 185.17160 * 9 7 6 11 11 C 1.50708 * 109.46831 * 89.99913 * 10 9 7 12 12 H 1.07994 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99533 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00339 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99457 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47458 * 60.00469 * 15 13 11 17 17 H 1.48509 * 109.47274 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47446 * 300.00463 * 15 13 11 19 19 C 1.39929 * 119.99743 * 5.17550 * 9 7 6 20 20 C 1.38873 * 120.06801 * 292.25006 * 19 9 7 21 21 C 1.38110 * 119.92360 * 179.79485 * 20 19 9 22 22 C 1.38285 * 120.07422 * 0.48534 * 21 20 19 23 23 C 1.38280 * 120.13659 * 359.74867 * 22 21 20 24 24 C 1.38106 * 120.07350 * 0.02562 * 23 22 21 25 25 C 1.47966 * 90.75992 * 335.30882 * 5 4 2 26 26 C 1.52996 * 113.76190 * 270.37310 * 25 5 4 27 27 C 1.53001 * 113.75734 * 139.00508 * 25 5 4 28 28 H 1.09002 * 109.47631 * 307.87213 * 1 2 3 29 29 H 1.09002 * 109.46653 * 67.87030 * 1 2 3 30 30 H 1.08993 * 109.47079 * 187.86505 * 1 2 3 31 31 H 1.08994 * 109.47338 * 172.12764 * 3 2 1 32 32 H 1.08994 * 109.47032 * 292.13284 * 3 2 1 33 33 H 1.09001 * 109.47109 * 52.12734 * 3 2 1 34 34 H 1.09003 * 113.76049 * 252.39702 * 4 2 1 35 35 H 1.09003 * 113.76076 * 23.76262 * 4 2 1 36 36 H 1.09004 * 109.47220 * 28.46998 * 6 5 4 37 37 H 1.08998 * 109.47229 * 148.46980 * 6 5 4 38 38 H 1.08997 * 109.47908 * 209.99996 * 10 9 7 39 39 H 1.09003 * 109.47157 * 330.00113 * 10 9 7 40 40 H 0.96997 * 119.99880 * 179.97438 * 14 13 11 41 41 H 1.08001 * 120.03551 * 0.03297 * 20 19 9 42 42 H 1.08005 * 119.96218 * 180.23480 * 21 20 19 43 43 H 1.07998 * 119.93000 * 179.72035 * 22 21 20 44 44 H 1.08000 * 119.95910 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.03416 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47108 * 156.55656 * 26 25 5 47 47 H 1.08998 * 109.47125 * 276.56064 * 26 25 5 48 48 H 1.09004 * 109.46988 * 36.55996 * 26 25 5 49 49 H 1.08991 * 109.47526 * 323.44529 * 27 25 5 50 50 H 1.09004 * 109.46633 * 83.44348 * 27 25 5 51 51 H 1.08995 * 109.47245 * 203.44005 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0532 5 7 3.1155 -1.3197 0.0002 6 6 3.3459 -2.7705 0.0002 7 6 4.5183 -3.0929 0.8905 8 8 5.0458 -2.2151 1.5402 9 7 4.9808 -4.3567 0.9645 10 6 6.0453 -4.6927 1.9132 11 6 5.4346 -5.1070 3.2273 12 1 4.3611 -5.1192 3.3438 13 6 6.2467 -5.4715 4.2802 14 7 7.5540 -5.4571 4.1381 15 14 5.4898 -5.9843 5.9092 16 1 4.6203 -7.1698 5.6997 17 1 6.5688 -6.3251 6.8710 18 1 4.6785 -4.8653 6.4522 19 6 4.4442 -5.3477 0.1351 20 6 3.1325 -5.7680 0.3121 21 6 2.6045 -6.7434 -0.5109 22 6 3.3836 -7.3085 -1.5039 23 6 4.6916 -6.8955 -1.6795 24 6 5.2241 -5.9173 -0.8628 25 6 2.1496 -0.9363 -1.0531 26 6 1.2245 -2.0756 -1.4855 27 6 2.7855 -0.2003 -2.2342 28 1 -0.3634 0.6309 0.8112 29 1 -0.3633 0.3871 -0.9520 30 1 -0.3633 -1.0179 0.1406 31 1 3.2071 1.3448 0.1407 32 1 1.9138 1.8940 -0.9519 33 1 1.6895 1.9893 0.8112 34 1 2.6025 -0.4119 1.8947 35 1 1.4904 -1.7479 1.3613 36 1 2.4567 -3.2796 0.3719 37 1 3.5581 -3.1047 -1.0153 38 1 6.6414 -5.5136 1.5148 39 1 6.6829 -3.8221 2.0672 40 1 8.1252 -5.7132 4.8791 41 1 2.5248 -5.3299 1.0900 42 1 1.5833 -7.0680 -0.3762 43 1 2.9698 -8.0742 -2.1432 44 1 5.2976 -7.3391 -2.4556 45 1 6.2458 -5.5956 -1.0002 46 1 0.3139 -1.6603 -1.9170 47 1 1.7303 -2.6922 -2.2285 48 1 0.9703 -2.6860 -0.6189 49 1 3.5810 0.4503 -1.8713 50 1 3.2004 -0.9261 -2.9336 51 1 2.0280 0.3989 -2.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319107383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:43 Heat of formation + Delta-G solvation = 29.360271 kcal Electronic energy + Delta-G solvation = -29822.524116 eV Core-core repulsion = 26109.058596 eV Total energy + Delta-G solvation = -3713.465520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22202 -39.65414 -37.91262 -34.77285 -33.21463 -32.60938 -31.39146 -30.71774 -29.40516 -28.93128 -28.36766 -26.62180 -26.13526 -23.85094 -22.84722 -22.46218 -22.10646 -21.07518 -18.92100 -17.30146 -16.95124 -16.49836 -16.19307 -16.00952 -15.71529 -15.05218 -14.94955 -14.88791 -14.26829 -14.12485 -14.03245 -13.54211 -13.31007 -13.15624 -12.75924 -12.68913 -12.56561 -12.48840 -12.33202 -12.28948 -12.09096 -11.93675 -11.78988 -11.66911 -11.45500 -11.21787 -11.08450 -10.96662 -10.87237 -10.78704 -10.61973 -10.28885 -10.16933 -9.97673 -9.73422 -9.26859 -8.74029 -8.67340 -8.43835 -8.32288 -7.62477 -6.05298 -4.10076 1.57155 1.63610 3.31322 3.34643 3.35647 3.41117 3.59354 4.00834 4.07981 4.27096 4.44159 4.58339 4.92941 4.96411 5.08717 5.13239 5.15779 5.17198 5.20537 5.29664 5.32830 5.36360 5.47208 5.50612 5.54563 5.57170 5.66624 5.68256 5.69998 5.75098 5.81087 5.82702 5.87930 5.89931 5.99549 6.06208 6.09675 6.13475 6.23921 6.25117 6.45889 6.58510 6.59925 6.71892 6.81822 6.96736 7.17078 7.21300 7.40873 7.52534 7.90441 8.19756 8.41178 8.87588 9.06835 9.54385 11.02953 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.004385 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.045754 B = 6384.095728 C = 7945.628974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 C -0.122 4.122 4 C 0.015 3.985 5 N -0.444 5.444 6 C 0.004 3.996 7 C 0.517 3.483 8 O -0.509 6.509 9 N -0.567 5.567 10 C 0.249 3.751 11 C -0.526 4.526 12 H 0.056 0.944 13 C 0.063 3.937 14 N -0.893 5.893 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.276 1.276 19 C 0.168 3.832 20 C -0.127 4.127 21 C -0.110 4.110 22 C -0.136 4.136 23 C -0.109 4.109 24 C -0.126 4.126 25 C 0.057 3.943 26 C -0.155 4.155 27 C -0.124 4.124 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.033 0.967 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.519 4.785 -14.935 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 C -0.180 4.180 4 C -0.114 4.114 5 N -0.166 5.166 6 C -0.127 4.127 7 C 0.304 3.696 8 O -0.383 6.383 9 N -0.297 5.297 10 C 0.131 3.869 11 C -0.565 4.565 12 H 0.074 0.926 13 C -0.139 4.139 14 N -0.532 5.532 15 Si 0.725 3.275 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C 0.076 3.924 20 C -0.147 4.147 21 C -0.129 4.129 22 C -0.155 4.155 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.033 4.033 26 C -0.214 4.214 27 C -0.182 4.182 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.110 0.890 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.142 0.858 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.088 0.912 50 H 0.071 0.929 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.317 5.532 -14.426 20.398 hybrid contribution -1.048 -1.183 1.095 1.923 sum -14.365 4.349 -13.331 20.075 Atomic orbital electron populations 1.21774 0.94248 1.01792 1.01674 1.22336 0.94774 0.95730 0.95641 1.21530 1.01824 0.93462 1.01145 1.24084 0.93330 0.97844 0.96141 1.68484 1.32260 1.12980 1.02896 1.22637 0.97670 0.91675 1.00746 1.20207 0.84591 0.82065 0.82716 1.90669 1.57962 1.45498 1.44140 1.46000 1.39672 1.06248 1.37756 1.19389 0.84475 0.97131 0.85859 1.21323 0.93238 1.45366 0.96580 0.92609 1.24901 0.94758 0.95463 0.98772 1.69917 1.02842 1.48028 1.32435 0.86564 0.78794 0.78966 0.83153 1.20233 1.21078 1.20167 1.17753 0.92278 0.91730 0.90675 1.21349 0.95815 0.98092 0.99440 1.20951 0.99639 0.96631 0.95654 1.21037 0.94507 1.00703 0.99206 1.20963 0.95444 0.97019 0.99300 1.21325 1.00435 0.98006 0.94778 1.22911 0.91742 0.95110 0.93521 1.22072 0.99678 0.97862 1.01745 1.21578 1.00623 0.99966 0.96021 0.92438 0.92474 0.92480 0.91137 0.92565 0.92754 0.88990 0.91624 0.91168 0.88961 0.94870 0.93355 0.92607 0.86209 0.86267 0.86446 0.86133 0.85806 0.91478 0.91870 0.92151 0.91204 0.92916 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.06 37.16 0.30 -0.91 16 2 C -0.08 -0.92 1.31 -153.58 -0.20 -1.12 16 3 C -0.12 -1.29 7.89 37.16 0.29 -1.00 16 4 C 0.01 0.21 6.73 -2.77 -0.02 0.19 16 5 N -0.44 -6.81 5.31 -223.84 -1.19 -8.00 16 6 C 0.00 0.07 2.87 -4.98 -0.01 0.06 16 7 C 0.52 11.23 7.63 -10.99 -0.08 11.14 16 8 O -0.51 -13.16 15.98 5.55 0.09 -13.08 16 9 N -0.57 -12.54 2.51 -114.74 -0.29 -12.83 16 10 C 0.25 6.68 5.15 -5.19 -0.03 6.65 16 11 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 15 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 C 0.17 3.10 4.42 -83.69 -0.37 2.73 16 20 C -0.13 -2.04 8.46 -39.39 -0.33 -2.38 16 21 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 22 C -0.14 -1.67 10.04 -39.55 -0.40 -2.07 16 23 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 24 C -0.13 -2.06 9.67 -39.40 -0.38 -2.44 16 25 C 0.06 0.66 1.28 -130.54 -0.17 0.50 16 26 C -0.16 -1.53 6.63 37.16 0.25 -1.29 16 27 C -0.12 -1.31 8.31 37.16 0.31 -1.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 7.01 -51.93 -0.36 0.13 16 31 H 0.07 0.88 7.72 -51.93 -0.40 0.48 16 32 H 0.06 0.51 7.57 -51.93 -0.39 0.12 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.45 8.10 -51.93 -0.42 1.03 16 35 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 36 H 0.07 1.05 4.77 -51.93 -0.25 0.81 16 37 H 0.09 1.41 7.26 -51.93 -0.38 1.03 16 38 H 0.03 0.91 7.85 -51.93 -0.41 0.50 16 39 H 0.05 1.45 7.36 -51.93 -0.38 1.07 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.12 1.93 7.57 -52.49 -0.40 1.53 16 42 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 43 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 46 H 0.07 0.55 7.41 -51.93 -0.38 0.17 16 47 H 0.06 0.62 7.81 -51.93 -0.41 0.21 16 48 H 0.06 0.62 5.84 -51.93 -0.30 0.32 16 49 H 0.07 0.81 7.26 -51.93 -0.38 0.44 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -33.00 400.78 -10.26 -43.26 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.57 Total: 1.95 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -2.06 Total: -8.35 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.74 Total: -46.91 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.08 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.00 -10.26 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319107383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.616 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds