Wall clock time and date at job start Tue Mar 31 2020 16:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 113.01191 * 2 1 4 4 C 1.53935 * 113.73181 * 131.63381 * 2 1 3 5 5 N 1.47957 * 86.18285 * 138.08404 * 4 2 1 6 6 C 1.46899 * 111.00003 * 222.42049 * 5 4 2 7 7 C 1.50700 * 109.47134 * 268.47108 * 6 5 4 8 8 O 1.21286 * 119.99918 * 5.12015 * 7 6 5 9 9 N 1.34776 * 120.00130 * 185.12606 * 7 6 5 10 10 C 1.46494 * 120.00032 * 185.17160 * 9 7 6 11 11 C 1.50708 * 109.46831 * 89.99913 * 10 9 7 12 12 H 1.07994 * 120.00115 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99533 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00339 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99457 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47458 * 60.00469 * 15 13 11 17 17 H 1.48509 * 109.47274 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47446 * 300.00463 * 15 13 11 19 19 C 1.39929 * 119.99743 * 5.17550 * 9 7 6 20 20 C 1.38873 * 120.06801 * 292.25006 * 19 9 7 21 21 C 1.38110 * 119.92360 * 179.79485 * 20 19 9 22 22 C 1.38285 * 120.07422 * 0.48534 * 21 20 19 23 23 C 1.38280 * 120.13659 * 359.74867 * 22 21 20 24 24 C 1.38106 * 120.07350 * 0.02562 * 23 22 21 25 25 C 1.47966 * 90.75992 * 335.30882 * 5 4 2 26 26 C 1.52996 * 113.76190 * 270.37310 * 25 5 4 27 27 C 1.53001 * 113.75734 * 139.00508 * 25 5 4 28 28 H 1.09002 * 109.47631 * 307.87213 * 1 2 3 29 29 H 1.09002 * 109.46653 * 67.87030 * 1 2 3 30 30 H 1.08993 * 109.47079 * 187.86505 * 1 2 3 31 31 H 1.08994 * 109.47338 * 172.12764 * 3 2 1 32 32 H 1.08994 * 109.47032 * 292.13284 * 3 2 1 33 33 H 1.09001 * 109.47109 * 52.12734 * 3 2 1 34 34 H 1.09003 * 113.76049 * 252.39702 * 4 2 1 35 35 H 1.09003 * 113.76076 * 23.76262 * 4 2 1 36 36 H 1.09004 * 109.47220 * 28.46998 * 6 5 4 37 37 H 1.08998 * 109.47229 * 148.46980 * 6 5 4 38 38 H 1.08997 * 109.47908 * 209.99996 * 10 9 7 39 39 H 1.09003 * 109.47157 * 330.00113 * 10 9 7 40 40 H 0.96997 * 119.99880 * 179.97438 * 14 13 11 41 41 H 1.08001 * 120.03551 * 0.03297 * 20 19 9 42 42 H 1.08005 * 119.96218 * 180.23480 * 21 20 19 43 43 H 1.07998 * 119.93000 * 179.72035 * 22 21 20 44 44 H 1.08000 * 119.95910 * 179.97438 * 23 22 21 45 45 H 1.07999 * 120.03416 * 179.97438 * 24 23 22 46 46 H 1.08995 * 109.47108 * 156.55656 * 26 25 5 47 47 H 1.08998 * 109.47125 * 276.56064 * 26 25 5 48 48 H 1.09004 * 109.46988 * 36.55996 * 26 25 5 49 49 H 1.08991 * 109.47526 * 323.44529 * 27 25 5 50 50 H 1.09004 * 109.46633 * 83.44348 * 27 25 5 51 51 H 1.08995 * 109.47245 * 203.44005 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1281 1.4083 0.0000 4 6 2.1495 -0.9362 1.0532 5 7 3.1155 -1.3197 0.0002 6 6 3.3459 -2.7705 0.0002 7 6 4.5183 -3.0929 0.8905 8 8 5.0458 -2.2151 1.5402 9 7 4.9808 -4.3567 0.9645 10 6 6.0453 -4.6927 1.9132 11 6 5.4346 -5.1070 3.2273 12 1 4.3611 -5.1192 3.3438 13 6 6.2467 -5.4715 4.2802 14 7 7.5540 -5.4571 4.1381 15 14 5.4898 -5.9843 5.9092 16 1 4.6203 -7.1698 5.6997 17 1 6.5688 -6.3251 6.8710 18 1 4.6785 -4.8653 6.4522 19 6 4.4442 -5.3477 0.1351 20 6 3.1325 -5.7680 0.3121 21 6 2.6045 -6.7434 -0.5109 22 6 3.3836 -7.3085 -1.5039 23 6 4.6916 -6.8955 -1.6795 24 6 5.2241 -5.9173 -0.8628 25 6 2.1496 -0.9363 -1.0531 26 6 1.2245 -2.0756 -1.4855 27 6 2.7855 -0.2003 -2.2342 28 1 -0.3634 0.6309 0.8112 29 1 -0.3633 0.3871 -0.9520 30 1 -0.3633 -1.0179 0.1406 31 1 3.2071 1.3448 0.1407 32 1 1.9138 1.8940 -0.9519 33 1 1.6895 1.9893 0.8112 34 1 2.6025 -0.4119 1.8947 35 1 1.4904 -1.7479 1.3613 36 1 2.4567 -3.2796 0.3719 37 1 3.5581 -3.1047 -1.0153 38 1 6.6414 -5.5136 1.5148 39 1 6.6829 -3.8221 2.0672 40 1 8.1252 -5.7132 4.8791 41 1 2.5248 -5.3299 1.0900 42 1 1.5833 -7.0680 -0.3762 43 1 2.9698 -8.0742 -2.1432 44 1 5.2976 -7.3391 -2.4556 45 1 6.2458 -5.5956 -1.0002 46 1 0.3139 -1.6603 -1.9170 47 1 1.7303 -2.6922 -2.2285 48 1 0.9703 -2.6860 -0.6189 49 1 3.5810 0.4503 -1.8713 50 1 3.2004 -0.9261 -2.9336 51 1 2.0280 0.3989 -2.7393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319107383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:42 Heat of formation + Delta-G solvation = 9.120996 kcal Electronic energy + Delta-G solvation = -29823.401757 eV Core-core repulsion = 26109.058596 eV Total energy + Delta-G solvation = -3714.343161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31278 -41.07234 -39.36701 -36.49972 -34.86571 -34.18567 -32.29348 -31.86953 -30.95897 -29.95737 -29.54790 -28.33858 -26.92002 -25.40576 -24.38741 -23.69952 -23.33719 -22.24010 -20.39046 -18.77886 -18.58627 -17.95303 -17.53806 -17.19760 -17.03829 -16.53621 -16.28277 -16.17500 -15.83574 -15.32789 -15.23823 -14.65962 -14.62874 -14.35168 -14.28378 -14.02706 -13.64168 -13.57481 -13.40889 -13.39330 -13.28123 -13.17152 -13.06366 -12.79816 -12.67717 -12.60252 -12.50940 -12.45887 -12.20151 -12.12556 -12.00279 -11.80274 -11.77085 -11.26965 -10.89826 -10.88662 -10.70298 -10.09064 -9.85057 -9.63617 -9.21754 -8.27736 -6.43637 0.36834 0.49584 1.31353 1.36262 1.43569 1.70585 2.08635 2.35088 2.84819 2.95017 3.01620 3.30247 3.56826 3.75470 3.94430 4.06497 4.10694 4.12067 4.13943 4.24426 4.30384 4.31435 4.34841 4.57069 4.59833 4.65563 4.71585 4.74676 4.81960 4.84308 4.87605 4.90077 4.92507 4.96594 5.06529 5.09575 5.09849 5.14732 5.16211 5.21510 5.30942 5.38979 5.40688 5.53325 5.54754 5.61887 5.62672 5.65304 5.76766 5.97115 6.06675 6.10817 6.62364 6.74202 7.21062 7.38815 8.79556 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010250 B = 0.004385 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.045754 B = 6384.095728 C = 7945.628974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.121 4.121 4 C 0.005 3.995 5 N -0.478 5.478 6 C 0.031 3.969 7 C 0.505 3.495 8 O -0.568 6.568 9 N -0.569 5.569 10 C 0.267 3.733 11 C -0.543 4.543 12 H 0.052 0.948 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.969 3.031 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.126 3.874 20 C -0.136 4.136 21 C -0.100 4.100 22 C -0.119 4.119 23 C -0.102 4.102 24 C -0.144 4.144 25 C 0.060 3.940 26 C -0.152 4.152 27 C -0.124 4.124 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.017 0.983 39 H 0.000 1.000 40 H 0.269 0.731 41 H 0.112 0.888 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.151 0.849 45 H 0.108 0.892 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.053 0.947 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.454 2.979 -17.018 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 C -0.178 4.178 4 C -0.124 4.124 5 N -0.201 5.201 6 C -0.101 4.101 7 C 0.295 3.705 8 O -0.446 6.446 9 N -0.297 5.297 10 C 0.147 3.853 11 C -0.581 4.581 12 H 0.070 0.930 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.793 3.207 16 H -0.185 1.185 17 H -0.200 1.200 18 H -0.201 1.201 19 C 0.035 3.965 20 C -0.155 4.155 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.120 4.120 24 C -0.164 4.164 25 C -0.029 4.029 26 C -0.210 4.210 27 C -0.181 4.181 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.035 0.965 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.173 0.827 43 H 0.179 0.821 44 H 0.169 0.831 45 H 0.126 0.874 46 H 0.111 0.889 47 H 0.084 0.916 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.285 3.698 -16.561 24.222 hybrid contribution 0.228 -0.661 1.649 1.791 sum -17.057 3.038 -14.912 22.859 Atomic orbital electron populations 1.21752 0.91784 1.02419 1.03010 1.22276 0.96473 0.94970 0.93428 1.21513 0.99939 0.93758 1.02573 1.24109 0.93452 0.98902 0.95912 1.68468 1.34512 1.12059 1.05035 1.22411 0.95191 0.92887 0.99587 1.21326 0.85405 0.81185 0.82586 1.90621 1.60112 1.47100 1.46787 1.45834 1.38622 1.07714 1.37520 1.18773 0.85383 0.94149 0.86954 1.21556 0.93106 1.45766 0.97697 0.93016 1.25874 0.95195 0.95162 1.02741 1.70049 1.04289 1.48555 1.33777 0.85447 0.78246 0.78910 0.78113 1.18454 1.19960 1.20101 1.18040 0.93966 0.92667 0.91782 1.21366 0.94628 0.99262 1.00294 1.21348 1.01268 0.94745 0.94448 1.21553 0.93491 1.00168 0.98459 1.21321 0.96496 0.95425 0.98803 1.21376 0.99871 0.99465 0.95698 1.23082 0.90998 0.95774 0.93053 1.22067 1.00180 0.97061 1.01678 1.21599 1.00878 0.99933 0.95694 0.91992 0.90435 0.92027 0.94092 0.90447 0.92035 0.92143 0.91121 0.89674 0.87789 0.96469 0.98186 0.92252 0.86978 0.82671 0.82125 0.83087 0.87415 0.88948 0.91588 0.92633 0.93051 0.92831 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.06 71.98 0.58 -1.37 16 2 C -0.07 -1.49 1.31 -51.54 -0.07 -1.55 16 3 C -0.12 -2.50 7.89 71.98 0.57 -1.93 16 4 C 0.01 0.15 6.73 86.41 0.58 0.73 16 5 N -0.48 -15.24 5.31 -862.08 -4.57 -19.81 16 6 C 0.03 1.03 2.87 85.56 0.25 1.28 16 7 C 0.51 23.70 7.63 87.66 0.67 24.37 16 8 O -0.57 -32.31 15.98 -3.05 -0.05 -32.35 16 9 N -0.57 -27.06 2.51 -635.31 -1.59 -28.65 16 10 C 0.27 15.58 5.15 85.64 0.44 16.02 16 11 C -0.54 -32.88 9.39 25.60 0.24 -32.64 16 12 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 13 C 0.01 0.57 5.46 84.66 0.46 1.03 16 14 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 15 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 19 C 0.13 4.79 4.42 38.15 0.17 4.96 16 20 C -0.14 -4.24 8.46 22.39 0.19 -4.06 16 21 C -0.10 -2.23 10.04 22.25 0.22 -2.00 16 22 C -0.12 -2.35 10.04 22.29 0.22 -2.13 16 23 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 24 C -0.14 -4.80 9.67 22.39 0.22 -4.58 16 25 C 0.06 1.32 1.28 3.63 0.00 1.32 16 26 C -0.15 -2.56 6.63 71.98 0.48 -2.08 16 27 C -0.12 -2.43 8.31 71.98 0.60 -1.83 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.88 7.01 -2.39 -0.02 0.86 16 31 H 0.04 1.08 7.72 -2.39 -0.02 1.07 16 32 H 0.08 1.26 7.57 -2.39 -0.02 1.24 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 35 H 0.07 1.95 6.96 -2.39 -0.02 1.93 16 36 H 0.09 2.58 4.77 -2.38 -0.01 2.57 16 37 H 0.10 3.20 7.26 -2.39 -0.02 3.19 16 38 H 0.02 1.03 7.85 -2.39 -0.02 1.02 16 39 H 0.00 0.00 7.36 -2.39 -0.02 -0.01 16 40 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 41 H 0.11 3.60 7.57 -2.91 -0.02 3.57 16 42 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.11 3.79 8.06 -2.91 -0.02 3.77 16 46 H 0.09 1.12 7.41 -2.39 -0.02 1.10 16 47 H 0.07 1.09 7.81 -2.39 -0.02 1.07 16 48 H 0.05 1.00 5.84 -2.38 -0.01 0.99 16 49 H 0.05 1.20 7.26 -2.39 -0.02 1.18 16 50 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.09 1.22 8.06 -2.39 -0.02 1.20 16 Total: -1.00 -79.58 400.78 3.03 -76.55 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.89 Total: 20.45 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 6.05 Total: -6.68 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -5.88 Total: -106.22 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.05 Total: -32.35 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -79.58 3.03 -76.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319107383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.670 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds