Wall clock time and date at job start Tue Mar 31 2020 15:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34487 * 125.57413 * 2 1 4 4 C 1.46689 * 106.33033 * 179.97438 * 3 2 1 5 5 C 1.47267 * 126.93836 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99464 * 219.09396 * 5 4 3 7 7 N 1.34772 * 119.99872 * 39.09463 * 5 4 3 8 8 C 1.46932 * 120.62930 * 185.40081 * 7 5 4 9 9 C 1.53191 * 108.77653 * 233.58770 * 8 7 5 10 10 C 1.53041 * 109.31446 * 305.36480 * 9 8 7 11 11 C 1.53042 * 109.53563 * 61.36592 * 10 9 8 12 12 H 1.08994 * 109.50136 * 58.61710 * 11 10 9 13 13 C 1.50702 * 109.49720 * 178.68460 * 11 10 9 14 14 H 1.08005 * 119.99671 * 359.97438 * 13 11 10 15 15 C 1.37870 * 120.00000 * 179.97438 * 13 11 10 16 16 N 1.31520 * 120.00307 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99976 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46957 * 90.00171 * 17 15 13 19 19 H 1.48499 * 109.47194 * 210.00257 * 17 15 13 20 20 H 1.48503 * 109.47319 * 330.00647 * 17 15 13 21 21 C 1.46921 * 120.63378 * 5.12611 * 7 5 4 22 22 C 1.36767 * 106.11859 * 359.97438 * 4 3 2 23 23 C 1.50700 * 125.80153 * 180.02562 * 22 4 3 24 24 N 1.34662 * 108.39734 * 0.02562 * 22 4 3 25 25 C 1.46499 * 124.85210 * 180.26708 * 24 22 4 26 26 C 1.53001 * 109.46940 * 269.71952 * 25 24 22 27 27 C 1.52996 * 117.49890 * 243.62332 * 26 25 24 28 28 C 1.53000 * 117.50065 * 174.99701 * 26 25 24 29 29 H 1.08994 * 109.47048 * 270.00022 * 1 2 3 30 30 H 1.09000 * 109.46555 * 30.00254 * 1 2 3 31 31 H 1.08999 * 109.47003 * 150.00258 * 1 2 3 32 32 H 1.07998 * 126.83006 * 359.97438 * 3 2 1 33 33 H 1.09002 * 109.58498 * 353.37576 * 8 7 5 34 34 H 1.08995 * 109.58404 * 113.65728 * 8 7 5 35 35 H 1.08999 * 109.49441 * 65.31577 * 9 8 7 36 36 H 1.08995 * 109.49366 * 185.41300 * 9 8 7 37 37 H 1.08995 * 109.45788 * 181.38481 * 10 9 8 38 38 H 1.08995 * 109.45740 * 301.34733 * 10 9 8 39 39 H 0.96995 * 119.99767 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.58511 * 246.19975 * 21 7 5 41 41 H 1.08997 * 109.58598 * 6.62308 * 21 7 5 42 42 H 1.09000 * 109.47280 * 269.94848 * 23 22 4 43 43 H 1.08998 * 109.47190 * 29.94968 * 23 22 4 44 44 H 1.08999 * 109.47230 * 149.94894 * 23 22 4 45 45 H 1.09008 * 109.47033 * 29.71290 * 25 24 22 46 46 H 1.08996 * 109.47348 * 149.71726 * 25 24 22 47 47 H 1.09005 * 115.55075 * 29.32454 * 26 25 24 48 48 H 1.09005 * 117.49584 * 359.97438 * 27 26 25 49 49 H 1.09002 * 117.50347 * 145.01736 * 27 26 25 50 50 H 1.09001 * 117.50106 * 214.97582 * 28 26 25 51 51 H 1.08996 * 117.49718 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6104 0.0006 5 6 4.8978 1.4300 0.0003 6 8 5.8582 1.0888 -0.6635 7 7 4.9534 2.5581 0.7356 8 6 6.1200 3.4477 0.6549 9 6 6.6584 3.6844 2.0694 10 6 5.5292 4.2081 2.9597 11 6 4.4122 3.1647 3.0364 12 1 4.8121 2.2322 3.4345 13 6 3.3153 3.6677 3.9392 14 1 3.4056 4.6347 4.4116 15 6 2.1965 2.8933 4.1619 16 7 2.0868 1.7156 3.5870 17 14 0.8371 3.5164 5.2815 18 1 -0.1544 4.2777 4.4798 19 1 0.1659 2.3637 5.9340 20 1 1.4192 4.4034 6.3206 21 6 3.8459 2.9250 1.6286 22 6 3.5998 -0.7552 0.0015 23 6 4.7721 -1.7021 0.0030 24 7 2.3007 -1.1099 0.0009 25 6 1.8098 -2.4902 0.0072 26 6 1.6349 -2.9758 -1.4331 27 6 0.2187 -3.3274 -1.8931 28 6 1.2398 -4.4390 -1.6423 29 1 -0.3633 0.0000 1.0276 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9629 2.1233 -0.0004 33 1 6.8927 2.9822 0.0429 34 1 5.8248 4.3980 0.2102 35 1 7.0373 2.7468 2.4760 36 1 7.4638 4.4180 2.0340 37 1 5.9156 4.4007 3.9605 38 1 5.1342 5.1327 2.5390 39 1 1.2998 1.1707 3.7440 40 1 3.3684 3.8345 1.2640 41 1 3.1175 2.1146 1.6594 42 1 5.0549 -1.9319 -1.0243 43 1 5.6139 -1.2374 0.5163 44 1 4.4956 -2.6221 0.5181 45 1 2.5280 -3.1290 0.5213 46 1 0.8509 -2.5325 0.5238 47 1 2.3051 -2.5258 -2.1656 48 1 -0.5884 -3.2132 -1.1694 49 1 -0.0431 -3.1087 -2.9284 50 1 1.6496 -4.9516 -2.5126 51 1 1.1048 -5.0558 -0.7539 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331130912.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:40 Heat of formation + Delta-G solvation = 24.508677 kcal Electronic energy + Delta-G solvation = -29921.382674 eV Core-core repulsion = 26207.706773 eV Total energy + Delta-G solvation = -3713.675901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05973 -38.89825 -37.49356 -36.39355 -33.04247 -32.54777 -32.20910 -31.41219 -29.66871 -28.78274 -26.73522 -25.00845 -24.88838 -23.63007 -22.65860 -21.97140 -21.12657 -20.70374 -19.54819 -18.89536 -17.24880 -16.62564 -16.18417 -15.70472 -15.29948 -15.14137 -14.92787 -14.54376 -14.18584 -13.74305 -13.56234 -13.41065 -13.17817 -12.91207 -12.73449 -12.65509 -12.41348 -12.32120 -12.18946 -12.10441 -11.85415 -11.81429 -11.73379 -11.68545 -11.25693 -10.98818 -10.95621 -10.81213 -10.62925 -10.46797 -10.25725 -10.24035 -10.13673 -9.79460 -9.28997 -9.00260 -8.80112 -8.42783 -7.85373 -7.56633 -7.32223 -5.99111 -4.05439 2.46976 3.03977 3.09798 3.28497 3.35576 3.39493 3.55189 3.93154 4.27033 4.42992 4.45321 4.59409 4.68747 4.96224 5.13613 5.20402 5.29463 5.31619 5.33992 5.38041 5.53180 5.59423 5.61003 5.63563 5.73495 5.82664 5.85985 5.86924 5.92108 5.94041 5.97767 6.17527 6.22232 6.23270 6.27789 6.41039 6.50290 6.53003 6.67785 6.77589 6.79593 6.94923 7.08032 7.15672 7.42648 7.50532 7.65280 7.72527 7.80316 7.90281 8.06938 8.34667 8.55292 8.96370 9.14492 9.58584 11.05592 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.010818 B = 0.004693 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.660301 B = 5964.452275 C = 7943.825684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.135 4.135 4 C -0.207 4.207 5 C 0.591 3.409 6 O -0.579 6.579 7 N -0.601 5.601 8 C 0.114 3.886 9 C -0.132 4.132 10 C -0.111 4.111 11 C 0.040 3.960 12 H 0.028 0.972 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.877 5.877 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.098 3.902 22 C 0.085 3.915 23 C -0.078 4.078 24 N -0.435 5.435 25 C 0.135 3.865 26 C -0.170 4.170 27 C -0.176 4.176 28 C -0.173 4.173 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.259 0.741 40 H 0.037 0.963 41 H 0.137 0.863 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.096 0.904 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.881 -9.184 -8.891 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 C -0.159 4.159 4 C -0.217 4.217 5 C 0.381 3.619 6 O -0.462 6.462 7 N -0.331 5.331 8 C -0.009 4.009 9 C -0.170 4.170 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.046 0.954 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.137 4.137 16 N -0.514 5.514 17 Si 0.715 3.285 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.022 4.022 22 C -0.030 4.030 23 C -0.136 4.136 24 N -0.113 5.113 25 C 0.012 3.988 26 C -0.189 4.189 27 C -0.213 4.213 28 C -0.211 4.211 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.154 0.846 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.129 0.871 48 H 0.114 0.886 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.661 -9.802 -9.218 13.717 hybrid contribution -0.910 0.491 0.827 1.324 sum -3.571 -9.311 -8.391 13.033 Atomic orbital electron populations 1.20248 0.88688 1.02241 1.02413 1.19921 0.92979 0.85343 1.11078 1.21611 0.90444 0.97277 1.06563 1.19918 0.93164 0.91852 1.16724 1.17515 0.85963 0.80100 0.78308 1.90645 1.38227 1.71983 1.45311 1.48312 1.20336 1.21953 1.42540 1.21431 0.88972 0.93275 0.97202 1.21923 0.98404 1.00787 0.95876 1.21637 0.96052 0.99592 0.97616 1.19038 0.92477 0.94250 0.92143 0.95391 1.21103 1.03012 1.03592 1.27835 0.92574 1.24974 0.98092 0.94849 0.95745 1.69894 1.28547 1.10043 1.42951 0.86678 0.82350 0.78343 0.81108 1.20718 1.21397 1.20065 1.22755 0.88544 1.01949 0.88991 1.19894 0.84429 0.93654 1.05015 1.20295 0.94442 0.96396 1.02443 1.43206 1.04818 1.05220 1.58023 1.21301 1.01196 0.81273 0.94998 1.22711 0.99574 0.98607 0.97964 1.23058 0.92432 1.03167 1.02603 1.22956 1.03649 0.90943 1.03521 0.91183 0.90682 0.92470 0.84278 0.90307 0.92654 0.92317 0.92490 0.93263 0.93326 0.93062 0.94462 0.84568 0.91016 0.90031 0.92372 0.89120 0.89310 0.87107 0.88564 0.88697 0.88553 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.80 36.01 0.35 -0.69 16 2 C 0.01 0.23 6.85 -81.86 -0.56 -0.33 16 3 C -0.14 -2.66 8.57 -37.50 -0.32 -2.98 16 4 C -0.21 -4.32 5.34 -103.35 -0.55 -4.87 16 5 C 0.59 13.30 7.32 -12.59 -0.09 13.20 16 6 O -0.58 -13.69 15.75 5.25 0.08 -13.61 16 7 N -0.60 -13.19 2.97 -173.83 -0.52 -13.70 16 8 C 0.11 2.20 6.44 -3.71 -0.02 2.18 16 9 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 10 C -0.11 -2.33 5.10 -26.69 -0.14 -2.47 16 11 C 0.04 0.99 2.26 -91.42 -0.21 0.78 16 12 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 13 C -0.52 -13.68 8.56 -34.44 -0.29 -13.97 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 16 N -0.88 -23.38 11.41 55.43 0.63 -22.75 16 17 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.10 2.31 4.54 -3.49 -0.02 2.30 16 22 C 0.08 1.54 6.88 -81.88 -0.56 0.97 16 23 C -0.08 -1.21 9.51 36.01 0.34 -0.87 16 24 N -0.43 -6.88 2.69 -107.96 -0.29 -7.17 16 25 C 0.13 1.56 5.65 -4.04 -0.02 1.54 16 26 C -0.17 -1.69 6.01 -90.62 -0.54 -2.24 16 27 C -0.18 -1.46 10.00 -26.73 -0.27 -1.73 16 28 C -0.17 -1.34 10.25 -26.73 -0.27 -1.62 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 32 H 0.14 2.77 7.42 -52.49 -0.39 2.38 16 33 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.14 3.35 2.82 -51.93 -0.15 3.20 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.08 1.41 7.65 -51.93 -0.40 1.01 16 44 H 0.06 0.74 6.92 -51.93 -0.36 0.38 16 45 H 0.09 0.97 6.87 -51.92 -0.36 0.62 16 46 H 0.09 0.94 7.26 -51.93 -0.38 0.57 16 47 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 48 H 0.10 0.75 8.03 -51.93 -0.42 0.33 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 399.58 15.07 6.02 6.02 Total: -1.00 -30.25 399.58 -11.18 -41.43 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -8.65 Total: 6.11 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -3.44 Total: -11.76 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.17 Total: -43.61 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.25 -11.18 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331130912.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.936 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds