Wall clock time and date at job start Tue Mar 31 2020 16:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47204 * 2 1 4 4 C 1.38263 * 120.08689 * 270.02204 * 3 2 1 5 5 C 1.37959 * 119.72099 * 180.22562 * 4 3 2 6 6 C 1.38842 * 120.50576 * 359.91691 * 5 4 3 7 7 C 1.37668 * 119.84006 * 359.62435 * 6 5 4 8 8 C 1.37909 * 120.08940 * 90.00162 * 3 2 1 9 9 C 1.50607 * 122.85957 * 181.34140 * 7 6 5 10 10 C 1.52794 * 110.84237 * 339.78736 * 9 7 6 11 11 N 1.47234 * 107.89977 * 47.52833 * 10 9 7 12 12 C 1.34774 * 121.32686 * 115.77968 * 11 10 9 13 13 O 1.21587 * 120.00127 * 354.78798 * 12 11 10 14 14 N 1.34773 * 119.99630 * 174.78841 * 12 11 10 15 15 C 1.46504 * 119.99986 * 184.96928 * 14 12 11 16 16 C 1.53000 * 109.47111 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46892 * 300.00051 * 16 15 14 18 18 C 1.53000 * 109.47453 * 60.00113 * 16 15 14 19 19 C 1.50703 * 109.46922 * 180.02562 * 16 15 14 20 20 H 1.07995 * 120.00016 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99782 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00183 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99753 * 179.97438 * 21 19 16 24 24 H 1.48493 * 109.47294 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46526 * 120.00314 * 23 21 19 26 26 H 1.48499 * 109.47408 * 239.99939 * 23 21 19 27 27 C 1.46687 * 117.33774 * 295.77987 * 11 10 9 28 28 H 1.09004 * 109.47354 * 59.99716 * 1 2 3 29 29 H 1.09000 * 109.47624 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47131 * 300.00216 * 1 2 3 31 31 H 1.08997 * 109.46672 * 240.00004 * 2 1 3 32 32 H 1.08997 * 109.46961 * 120.00183 * 2 1 3 33 33 H 1.07996 * 120.13990 * 0.19832 * 4 3 2 34 34 H 1.07997 * 119.74824 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.71029 * 0.04558 * 8 3 2 36 36 H 1.09004 * 109.19882 * 100.13372 * 9 7 6 37 37 H 1.08996 * 109.20471 * 219.42926 * 9 7 6 38 38 H 1.09002 * 109.77412 * 167.12779 * 10 9 7 39 39 H 1.09000 * 109.77279 * 287.92984 * 10 9 7 40 40 H 0.97007 * 120.00473 * 4.96963 * 14 12 11 41 41 H 1.08997 * 109.47444 * 299.99935 * 15 14 12 42 42 H 1.09000 * 109.47040 * 59.99997 * 15 14 12 43 43 H 1.08996 * 109.47440 * 60.00346 * 17 16 15 44 44 H 1.09009 * 109.46820 * 180.02562 * 17 16 15 45 45 H 1.09000 * 109.47197 * 300.00010 * 17 16 15 46 46 H 1.08998 * 109.46436 * 59.99648 * 18 16 15 47 47 H 1.08992 * 109.47247 * 179.97438 * 18 16 15 48 48 H 1.08998 * 109.46449 * 300.00214 * 18 16 15 49 49 H 0.96999 * 119.99681 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.43309 * 284.27101 * 27 11 10 51 51 H 1.08998 * 109.42722 * 164.40311 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0744 -1.1963 5 6 2.7273 3.3735 -1.1875 6 6 2.9630 4.0296 0.0132 7 6 2.7248 3.3833 1.2052 8 6 2.2629 2.0726 1.1933 9 6 2.9286 4.0394 2.5454 10 6 3.8622 5.2430 2.4251 11 7 3.4087 6.0552 1.2839 12 6 2.9463 7.3093 1.4561 13 8 2.8082 7.7576 2.5779 14 7 2.6370 8.0665 0.3850 15 6 2.2386 9.4646 0.5666 16 6 1.9435 10.0921 -0.7972 17 6 3.1986 10.0287 -1.6700 18 6 0.8095 9.3231 -1.4780 19 6 1.5343 11.5305 -0.6103 20 1 1.4888 11.9544 0.3819 21 6 1.2180 12.3051 -1.7062 22 7 1.2729 11.7887 -2.9145 23 14 0.7101 14.0878 -1.4745 24 1 0.7271 14.4234 -0.0281 25 1 1.6595 14.9709 -2.1984 26 1 -0.6595 14.2863 -2.0131 27 6 3.4803 5.4448 -0.0481 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0808 1.5700 -2.1337 34 1 2.9080 3.8843 -2.1217 35 1 2.0825 1.5601 2.1267 36 1 1.9650 4.3705 2.9327 37 1 3.3626 3.3166 3.2362 38 1 3.8199 5.8353 3.3392 39 1 4.8830 4.9020 2.2526 40 1 2.6782 7.6859 -0.5063 41 1 1.3442 9.5098 1.1880 42 1 3.0463 10.0124 1.0520 43 1 3.4950 8.9886 -1.8052 44 1 2.9885 10.4763 -2.6415 45 1 4.0065 10.5767 -1.1850 46 1 -0.0845 9.3682 -0.8561 47 1 0.5991 9.7704 -2.4493 48 1 1.1060 8.2829 -1.6131 49 1 1.0508 12.3339 -3.6854 50 1 4.5156 5.4381 -0.3887 51 1 2.8735 6.0229 -0.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348675979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:45 Heat of formation + Delta-G solvation = -17.959438 kcal Electronic energy + Delta-G solvation = -28621.225251 eV Core-core repulsion = 24905.707795 eV Total energy + Delta-G solvation = -3715.517457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.61460 -39.30464 -36.87437 -36.03715 -33.90545 -33.65388 -32.71072 -30.80992 -30.19556 -29.28069 -26.12010 -25.71258 -25.50319 -24.80257 -23.65452 -23.06079 -22.27297 -20.44020 -19.06824 -18.80866 -17.80334 -16.66483 -15.91356 -15.84613 -15.53135 -15.32761 -14.96611 -14.73180 -14.52505 -14.07550 -14.02640 -13.77351 -13.66028 -13.20418 -13.04577 -12.96260 -12.86997 -12.46902 -12.37892 -12.28303 -12.09393 -11.83145 -11.45123 -11.38803 -11.31784 -11.18913 -11.02729 -10.86570 -10.75316 -10.64243 -10.37294 -10.19202 -9.76072 -9.61766 -9.29248 -8.92884 -8.76894 -8.70971 -8.55563 -8.39446 -8.13386 -6.00996 -4.10593 1.14982 1.22423 2.90753 3.28212 3.36811 3.41963 3.50927 3.58789 4.31087 4.41809 4.44548 4.50555 4.61917 4.73686 4.83175 4.97541 5.06407 5.13637 5.17654 5.19875 5.25958 5.26921 5.40413 5.44799 5.48948 5.58937 5.63653 5.78945 5.80623 5.85627 5.91943 6.02492 6.19934 6.26134 6.38529 6.41329 6.45472 6.52110 6.56643 6.81137 6.83528 6.84189 6.93838 7.04760 7.10961 7.28337 7.40579 7.57261 7.71334 8.02479 8.13703 8.38064 8.43337 8.89372 9.02386 9.55117 11.00549 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002596 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.770356 B =10781.806354 C =11621.237767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.096 4.096 7 C -0.061 4.061 8 C -0.119 4.119 9 C -0.098 4.098 10 C 0.132 3.868 11 N -0.636 5.636 12 C 0.706 3.294 13 O -0.596 6.596 14 N -0.733 5.733 15 C 0.149 3.851 16 C 0.056 3.944 17 C -0.130 4.130 18 C -0.129 4.129 19 C -0.503 4.503 20 H 0.058 0.942 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.154 3.846 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.004 0.996 44 H 0.085 0.915 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.004 0.996 49 H 0.259 0.741 50 H 0.079 0.921 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 -23.341 3.271 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.127 4.127 6 C -0.097 4.097 7 C -0.062 4.062 8 C -0.137 4.137 9 C -0.136 4.136 10 C 0.008 3.992 11 N -0.374 5.374 12 C 0.408 3.592 13 O -0.474 6.474 14 N -0.388 5.388 15 C 0.026 3.974 16 C 0.055 3.945 17 C -0.187 4.187 18 C -0.187 4.187 19 C -0.542 4.542 20 H 0.077 0.923 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.721 3.279 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.211 1.211 27 C 0.030 3.970 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.229 0.771 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.046 0.954 47 H 0.104 0.896 48 H 0.023 0.977 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.588 -22.863 3.910 23.471 hybrid contribution -0.327 0.685 -0.518 0.919 sum 3.261 -22.179 3.392 22.672 Atomic orbital electron populations 1.21754 0.94699 1.01617 1.02408 1.20525 0.96215 0.92665 1.02680 1.19802 0.99082 0.96216 0.93224 1.20905 1.00533 0.94842 0.97524 1.21045 0.99367 0.94950 0.97336 1.19794 1.00992 0.95933 0.93017 1.19484 0.98481 0.93708 0.94484 1.21011 1.00800 0.94336 0.97596 1.20875 1.01477 0.97352 0.93907 1.21368 0.96332 0.90992 0.90463 1.47183 1.69113 1.13774 1.07375 1.15883 0.78097 0.79931 0.85326 1.90869 1.60899 1.72581 1.23091 1.45657 1.71950 1.13693 1.07530 1.21605 0.98496 0.77044 1.00246 1.18368 0.92777 0.94656 0.88689 1.21823 0.97146 0.96193 1.03576 1.21814 0.98139 0.95179 1.03561 1.21024 1.45345 0.94564 0.93252 0.92336 1.24882 0.95193 0.98304 0.95187 1.69816 1.49056 1.35812 0.97837 0.86516 0.78101 0.84952 0.78322 1.19747 1.21090 1.21087 1.20358 1.01096 0.90231 0.85333 0.92468 0.92466 0.92523 0.91106 0.91176 0.86073 0.85686 0.86298 0.90037 0.89877 0.88317 0.91384 0.77064 0.92885 0.92952 0.97675 0.89606 0.95409 0.95433 0.89605 0.97733 0.93098 0.90342 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.08 -0.59 6.07 -27.88 -0.17 -0.76 16 3 C -0.08 -0.77 5.13 -104.74 -0.54 -1.31 16 4 C -0.12 -1.13 9.71 -39.67 -0.39 -1.52 16 5 C -0.11 -1.11 9.62 -39.46 -0.38 -1.49 16 6 C -0.10 -1.11 5.82 -104.56 -0.61 -1.71 16 7 C -0.06 -0.68 5.76 -104.60 -0.60 -1.29 16 8 C -0.12 -1.18 9.25 -39.43 -0.36 -1.54 16 9 C -0.10 -1.03 5.86 -28.03 -0.16 -1.19 16 10 C 0.13 1.59 6.43 -3.75 -0.02 1.57 16 11 N -0.64 -9.23 2.93 -180.12 -0.53 -9.76 16 12 C 0.71 13.19 8.32 -86.92 -0.72 12.47 16 13 O -0.60 -13.19 15.85 5.29 0.08 -13.10 16 14 N -0.73 -13.74 4.86 -65.22 -0.32 -14.06 16 15 C 0.15 3.26 4.51 -4.04 -0.02 3.24 16 16 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 17 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 18 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 19 C -0.50 -13.26 8.01 -34.44 -0.28 -13.53 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 22 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 23 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.15 1.84 6.07 -5.04 -0.03 1.81 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.07 8.05 -52.49 -0.42 0.65 16 35 H 0.12 0.97 8.05 -52.48 -0.42 0.55 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.10 1.31 7.09 -51.93 -0.37 0.94 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 6.68 3.82 -40.82 -0.16 6.53 16 41 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 44 H 0.09 2.14 6.07 -51.92 -0.32 1.82 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 48 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 49 H 0.26 6.65 8.31 -40.82 -0.34 6.32 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.09 1.08 5.97 -51.93 -0.31 0.77 16 LS Contribution 394.79 15.07 5.95 5.95 Total: -1.00 -29.90 394.79 -11.28 -41.17 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -8.48 Total: 5.44 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -3.49 Total: -8.31 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.33 Total: -46.94 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.90 -11.28 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348675979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.213 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds