Wall clock time and date at job start Tue Mar 31 2020 16:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47204 * 2 1 4 4 C 1.38263 * 120.08689 * 270.02204 * 3 2 1 5 5 C 1.37959 * 119.72099 * 180.22562 * 4 3 2 6 6 C 1.38842 * 120.50576 * 359.91691 * 5 4 3 7 7 C 1.37668 * 119.84006 * 359.62435 * 6 5 4 8 8 C 1.37909 * 120.08940 * 90.00162 * 3 2 1 9 9 C 1.50607 * 122.85957 * 181.34140 * 7 6 5 10 10 C 1.52794 * 110.84237 * 339.78736 * 9 7 6 11 11 N 1.47234 * 107.89977 * 47.52833 * 10 9 7 12 12 C 1.34774 * 121.32686 * 115.77968 * 11 10 9 13 13 O 1.21587 * 120.00127 * 354.78798 * 12 11 10 14 14 N 1.34773 * 119.99630 * 174.78841 * 12 11 10 15 15 C 1.46504 * 119.99986 * 184.96928 * 14 12 11 16 16 C 1.53000 * 109.47111 * 180.02562 * 15 14 12 17 17 C 1.53005 * 109.46892 * 300.00051 * 16 15 14 18 18 C 1.53000 * 109.47453 * 60.00113 * 16 15 14 19 19 C 1.50703 * 109.46922 * 180.02562 * 16 15 14 20 20 H 1.07995 * 120.00016 * 359.97438 * 19 16 15 21 21 C 1.37879 * 119.99782 * 179.97438 * 19 16 15 22 22 N 1.31517 * 120.00183 * 0.02562 * 21 19 16 23 23 Si 1.86801 * 119.99753 * 179.97438 * 21 19 16 24 24 H 1.48493 * 109.47294 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46526 * 120.00314 * 23 21 19 26 26 H 1.48499 * 109.47408 * 239.99939 * 23 21 19 27 27 C 1.46687 * 117.33774 * 295.77987 * 11 10 9 28 28 H 1.09004 * 109.47354 * 59.99716 * 1 2 3 29 29 H 1.09000 * 109.47624 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47131 * 300.00216 * 1 2 3 31 31 H 1.08997 * 109.46672 * 240.00004 * 2 1 3 32 32 H 1.08997 * 109.46961 * 120.00183 * 2 1 3 33 33 H 1.07996 * 120.13990 * 0.19832 * 4 3 2 34 34 H 1.07997 * 119.74824 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.71029 * 0.04558 * 8 3 2 36 36 H 1.09004 * 109.19882 * 100.13372 * 9 7 6 37 37 H 1.08996 * 109.20471 * 219.42926 * 9 7 6 38 38 H 1.09002 * 109.77412 * 167.12779 * 10 9 7 39 39 H 1.09000 * 109.77279 * 287.92984 * 10 9 7 40 40 H 0.97007 * 120.00473 * 4.96963 * 14 12 11 41 41 H 1.08997 * 109.47444 * 299.99935 * 15 14 12 42 42 H 1.09000 * 109.47040 * 59.99997 * 15 14 12 43 43 H 1.08996 * 109.47440 * 60.00346 * 17 16 15 44 44 H 1.09009 * 109.46820 * 180.02562 * 17 16 15 45 45 H 1.09000 * 109.47197 * 300.00010 * 17 16 15 46 46 H 1.08998 * 109.46436 * 59.99648 * 18 16 15 47 47 H 1.08992 * 109.47247 * 179.97438 * 18 16 15 48 48 H 1.08998 * 109.46449 * 300.00214 * 18 16 15 49 49 H 0.96999 * 119.99681 * 180.02562 * 22 21 19 50 50 H 1.08996 * 109.43309 * 284.27101 * 27 11 10 51 51 H 1.08998 * 109.42722 * 164.40311 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2630 2.0744 -1.1963 5 6 2.7273 3.3735 -1.1875 6 6 2.9630 4.0296 0.0132 7 6 2.7248 3.3833 1.2052 8 6 2.2629 2.0726 1.1933 9 6 2.9286 4.0394 2.5454 10 6 3.8622 5.2430 2.4251 11 7 3.4087 6.0552 1.2839 12 6 2.9463 7.3093 1.4561 13 8 2.8082 7.7576 2.5779 14 7 2.6370 8.0665 0.3850 15 6 2.2386 9.4646 0.5666 16 6 1.9435 10.0921 -0.7972 17 6 3.1986 10.0287 -1.6700 18 6 0.8095 9.3231 -1.4780 19 6 1.5343 11.5305 -0.6103 20 1 1.4888 11.9544 0.3819 21 6 1.2180 12.3051 -1.7062 22 7 1.2729 11.7887 -2.9145 23 14 0.7101 14.0878 -1.4745 24 1 0.7271 14.4234 -0.0281 25 1 1.6595 14.9709 -2.1984 26 1 -0.6595 14.2863 -2.0131 27 6 3.4803 5.4448 -0.0481 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0808 1.5700 -2.1337 34 1 2.9080 3.8843 -2.1217 35 1 2.0825 1.5601 2.1267 36 1 1.9650 4.3705 2.9327 37 1 3.3626 3.3166 3.2362 38 1 3.8199 5.8353 3.3392 39 1 4.8830 4.9020 2.2526 40 1 2.6782 7.6859 -0.5063 41 1 1.3442 9.5098 1.1880 42 1 3.0463 10.0124 1.0520 43 1 3.4950 8.9886 -1.8052 44 1 2.9885 10.4763 -2.6415 45 1 4.0065 10.5767 -1.1850 46 1 -0.0845 9.3682 -0.8561 47 1 0.5991 9.7704 -2.4493 48 1 1.1060 8.2829 -1.6131 49 1 1.0508 12.3339 -3.6854 50 1 4.5156 5.4381 -0.3887 51 1 2.8735 6.0229 -0.7449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348675979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:44 Heat of formation + Delta-G solvation = -31.689195 kcal Electronic energy + Delta-G solvation = -28621.820618 eV Core-core repulsion = 24905.707795 eV Total energy + Delta-G solvation = -3716.112824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69950 -40.43130 -38.37791 -37.34866 -35.18901 -34.67980 -33.90468 -32.54934 -30.99198 -30.19314 -27.57447 -27.52069 -27.11251 -26.26981 -24.60630 -23.84343 -23.09908 -21.55998 -20.63426 -20.20596 -19.01547 -17.85800 -17.63352 -16.99457 -16.67601 -16.47356 -16.26909 -15.92111 -15.60798 -15.29643 -15.15551 -14.84389 -14.68341 -14.55682 -14.36987 -14.10476 -13.96410 -13.68057 -13.50426 -13.23169 -13.16479 -13.13876 -13.06715 -12.69690 -12.57524 -12.53670 -12.25893 -12.16168 -12.12745 -11.97897 -11.69836 -11.53021 -11.49186 -11.36546 -11.12928 -10.70382 -10.40349 -10.16057 -9.67133 -9.49247 -9.32788 -8.02142 -6.17457 0.39044 0.47834 1.41777 1.45764 1.54984 1.65014 2.12110 2.46129 2.75653 3.02546 3.21575 3.63524 3.70928 3.93136 3.96426 4.13368 4.18639 4.26697 4.36395 4.41655 4.46721 4.52326 4.53673 4.55841 4.60815 4.69605 4.72297 4.78136 4.83769 4.93442 4.99697 5.04324 5.07322 5.09630 5.09910 5.16466 5.19090 5.25374 5.37238 5.39415 5.43045 5.55229 5.61320 5.64154 5.66564 5.68001 5.74659 5.96711 6.12997 6.14261 6.21311 6.43829 6.86527 6.97824 7.50108 7.55394 8.97226 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.002596 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.770356 B =10781.806354 C =11621.237767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.086 4.086 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.126 4.126 9 C -0.090 4.090 10 C 0.127 3.873 11 N -0.629 5.629 12 C 0.703 3.297 13 O -0.636 6.636 14 N -0.727 5.727 15 C 0.166 3.834 16 C 0.053 3.947 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.527 4.527 20 H 0.044 0.956 21 C 0.028 3.972 22 N -0.899 5.899 23 Si 0.946 3.054 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.152 3.848 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.402 0.598 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.016 0.984 47 H 0.065 0.935 48 H 0.032 0.968 49 H 0.260 0.740 50 H 0.098 0.902 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -25.618 2.614 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.144 4.144 5 C -0.134 4.134 6 C -0.114 4.114 7 C -0.077 4.077 8 C -0.144 4.144 9 C -0.128 4.128 10 C 0.005 3.995 11 N -0.366 5.366 12 C 0.404 3.596 13 O -0.518 6.518 14 N -0.384 5.384 15 C 0.042 3.958 16 C 0.052 3.948 17 C -0.177 4.177 18 C -0.176 4.176 19 C -0.565 4.565 20 H 0.063 0.937 21 C -0.171 4.171 22 N -0.538 5.538 23 Si 0.773 3.227 24 H -0.201 1.201 25 H -0.206 1.206 26 H -0.207 1.207 27 C 0.029 3.971 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.083 0.917 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.241 0.759 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.083 0.917 48 H 0.051 0.949 49 H 0.070 0.930 50 H 0.116 0.884 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.065 -25.196 3.227 25.725 hybrid contribution -0.467 1.288 -0.316 1.406 sum 3.598 -23.907 2.911 24.351 Atomic orbital electron populations 1.21745 0.94655 1.02341 1.01654 1.20568 0.96119 0.91417 1.03781 1.20123 0.98231 0.97263 0.92983 1.21200 0.99957 0.94698 0.98502 1.21245 0.99225 0.95427 0.97461 1.19813 1.02263 0.95576 0.93785 1.19621 0.99254 0.94433 0.94425 1.21216 1.00522 0.93976 0.98639 1.20809 1.00348 0.97124 0.94523 1.21581 0.98030 0.90938 0.88986 1.47221 1.67613 1.12436 1.09351 1.16008 0.78035 0.81082 0.84459 1.90838 1.62571 1.73879 1.24537 1.45375 1.72184 1.12559 1.08240 1.21159 0.97102 0.78653 0.98881 1.18355 0.93346 0.93566 0.89530 1.21658 0.96375 0.97779 1.01876 1.21653 0.97511 0.96558 1.01901 1.21279 1.46062 0.96390 0.92785 0.93734 1.25447 0.95282 1.01326 0.95079 1.69910 1.49082 1.36700 0.98093 0.85696 0.77820 0.81308 0.77915 1.20072 1.20637 1.20746 1.20529 1.02322 0.90557 0.83678 0.93121 0.91048 0.93373 0.89953 0.90179 0.84266 0.84358 0.84828 0.91741 0.87105 0.89990 0.88977 0.75893 0.94838 0.94413 0.94680 0.91734 0.96165 0.96502 0.91663 0.94944 0.93006 0.88442 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 71.98 0.71 -0.98 16 2 C -0.08 -0.92 6.07 29.85 0.18 -0.74 16 3 C -0.09 -1.39 5.13 -19.94 -0.10 -1.49 16 4 C -0.13 -2.07 9.71 22.21 0.22 -1.85 16 5 C -0.12 -2.11 9.62 22.35 0.22 -1.89 16 6 C -0.11 -2.40 5.82 -19.82 -0.12 -2.51 16 7 C -0.08 -1.58 5.76 -19.85 -0.11 -1.70 16 8 C -0.13 -2.21 9.25 22.37 0.21 -2.00 16 9 C -0.09 -1.77 5.86 29.75 0.17 -1.59 16 10 C 0.13 2.94 6.43 86.17 0.55 3.49 16 11 N -0.63 -17.71 2.93 -842.05 -2.47 -20.18 16 12 C 0.70 26.25 8.32 179.06 1.49 27.74 16 13 O -0.64 -28.80 15.85 -3.99 -0.06 -28.86 16 14 N -0.73 -27.02 4.86 -478.54 -2.33 -29.34 16 15 C 0.17 7.40 4.51 86.38 0.39 7.79 16 16 C 0.05 2.48 0.50 -52.92 -0.03 2.46 16 17 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 18 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 19 C -0.53 -28.18 8.01 25.60 0.21 -27.97 16 20 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16 21 C 0.03 1.50 5.15 84.65 0.44 1.94 16 22 N -0.90 -47.98 9.35 21.45 0.20 -47.78 16 23 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.15 3.38 6.07 85.63 0.52 3.90 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 32 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 33 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.14 2.05 8.05 -2.91 -0.02 2.02 16 35 H 0.13 1.86 8.05 -2.91 -0.02 1.84 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.11 1.52 8.11 -2.39 -0.02 1.50 16 38 H 0.08 2.19 7.09 -2.39 -0.02 2.17 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.40 13.16 3.82 -92.70 -0.35 12.80 16 41 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 44 H 0.06 3.19 6.07 -2.38 -0.01 3.17 16 45 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 48 H 0.03 1.24 6.86 -2.39 -0.02 1.23 16 49 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 50 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.09 1.94 5.97 -2.39 -0.01 1.93 16 Total: -1.00 -64.66 394.79 4.03 -60.63 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.56 Total: 25.57 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.10 Total: -4.96 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -4.60 Total: -97.30 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.06 Total: -28.86 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -64.66 4.03 -60.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348675979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.940 kcal (2) G-P(sol) polarization free energy of solvation -64.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds