Wall clock time and date at job start Tue Mar 31 2020 16:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53113 * 109.52760 * 2 1 4 4 C 1.53037 * 109.28094 * 182.37856 * 3 2 1 5 5 N 1.46841 * 109.52664 * 59.17794 * 4 3 2 6 6 C 1.46890 * 111.00326 * 174.16344 * 5 4 3 7 7 C 1.53001 * 109.47299 * 169.99979 * 6 5 4 8 8 N 1.46504 * 109.46877 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99473 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00467 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99740 * 180.27299 * 9 8 7 12 12 H 1.08998 * 109.47165 * 299.72881 * 11 9 8 13 13 C 1.50707 * 109.46796 * 59.72694 * 11 9 8 14 14 H 1.07998 * 119.99951 * 235.34209 * 13 11 9 15 15 C 1.37876 * 119.99655 * 55.34830 * 13 11 9 16 16 N 1.31511 * 120.00303 * 1.96912 * 15 13 11 17 17 Si 1.86797 * 119.99690 * 181.97781 * 15 13 11 18 18 H 1.48499 * 109.47598 * 89.99797 * 17 15 13 19 19 H 1.48507 * 109.47157 * 209.99494 * 17 15 13 20 20 H 1.48501 * 109.47327 * 329.99125 * 17 15 13 21 21 C 1.50697 * 109.47046 * 179.72521 * 11 9 8 22 22 C 1.38233 * 120.00129 * 226.94781 * 21 11 9 23 23 C 1.38239 * 120.00256 * 179.79167 * 22 21 11 24 24 C 1.38238 * 119.99554 * 0.44155 * 23 22 21 25 25 C 1.38234 * 120.00140 * 359.80994 * 24 23 22 26 26 C 1.38235 * 120.00027 * 359.97438 * 25 24 23 27 27 C 1.46850 * 111.19809 * 298.25962 * 5 4 3 28 28 C 1.53047 * 109.52155 * 61.74197 * 27 5 4 29 29 H 1.09007 * 109.47234 * 59.99758 * 1 2 3 30 30 H 1.08995 * 109.47655 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47346 * 300.00146 * 1 2 3 32 32 H 1.09007 * 109.52269 * 120.12825 * 2 1 3 33 33 H 1.09005 * 109.50200 * 62.43577 * 3 2 1 34 34 H 1.08997 * 109.53608 * 302.34075 * 3 2 1 35 35 H 1.09007 * 109.45920 * 299.16083 * 4 3 2 36 36 H 1.09001 * 109.45573 * 179.19120 * 4 3 2 37 37 H 1.09004 * 109.47189 * 50.00038 * 6 5 4 38 38 H 1.09005 * 109.47135 * 290.00219 * 6 5 4 39 39 H 1.08999 * 109.46747 * 60.00349 * 7 6 5 40 40 H 1.08998 * 109.47049 * 299.99809 * 7 6 5 41 41 H 0.96993 * 120.00374 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00222 * 179.97438 * 16 15 13 43 43 H 1.08003 * 120.00092 * 359.97438 * 22 21 11 44 44 H 1.07996 * 120.00589 * 180.27137 * 23 22 21 45 45 H 1.08001 * 120.00012 * 179.83701 * 24 23 22 46 46 H 1.08003 * 120.00204 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.00108 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.46180 * 181.75514 * 27 5 4 49 49 H 1.09000 * 109.46549 * 301.72875 * 27 5 4 50 50 H 1.09003 * 109.50005 * 180.88041 * 28 27 5 51 51 H 1.08989 * 109.50100 * 60.76023 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4369 -0.0600 5 7 4.0116 0.7424 -1.2764 6 6 5.4685 0.8371 -1.4382 7 6 5.9184 -0.0965 -2.5637 8 7 7.3714 -0.0015 -2.7255 9 6 7.9946 -0.7404 -3.6648 10 8 7.3525 -1.4836 -4.3764 11 6 9.4900 -0.6474 -3.8270 12 1 9.7652 0.3771 -4.0777 13 6 10.1609 -1.0467 -2.5380 14 1 10.8575 -0.3734 -2.0607 15 6 9.8854 -2.2716 -1.9681 16 7 9.0670 -3.1073 -2.5691 17 14 10.6744 -2.7438 -0.3422 18 1 9.8025 -2.3055 0.7771 19 1 10.8486 -4.2176 -0.2860 20 1 11.9997 -2.0841 -0.2249 21 6 9.9338 -1.5714 -4.9316 22 6 11.0156 -2.4100 -4.7384 23 6 11.4202 -3.2607 -5.7501 24 6 10.7484 -3.2663 -6.9583 25 6 9.6698 -2.4241 -7.1533 26 6 9.2625 -1.5766 -6.1400 27 6 3.5721 -0.6588 -1.2766 28 6 2.0429 -0.7152 -1.2530 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8942 -0.5157 0.8886 33 1 1.7152 1.9450 0.9109 34 1 1.6457 1.9703 -0.8679 35 1 3.9666 0.9222 0.8157 36 1 3.9378 2.4632 -0.0746 37 1 5.9570 0.5466 -0.5081 38 1 5.7406 1.8630 -1.6864 39 1 5.4300 0.1941 -3.4938 40 1 5.6464 -1.1224 -2.3155 41 1 7.8850 0.5925 -2.1561 42 1 8.8734 -3.9692 -2.1684 43 1 11.5431 -2.4026 -3.7959 44 1 12.2626 -3.9190 -5.5976 45 1 11.0660 -3.9291 -7.7497 46 1 9.1447 -2.4288 -8.0971 47 1 8.4201 -0.9182 -6.2926 48 1 3.9400 -1.1547 -2.1748 49 1 3.9677 -1.1637 -0.3952 50 1 1.7173 -1.7553 -1.2374 51 1 1.6469 -0.2226 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362086272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:52 Heat of formation + Delta-G solvation = -20.866032 kcal Electronic energy + Delta-G solvation = -28756.588043 eV Core-core repulsion = 25040.944547 eV Total energy + Delta-G solvation = -3715.643496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.43496 -38.82070 -37.39558 -35.39369 -33.59043 -33.22171 -30.99134 -30.79559 -29.64590 -29.41242 -27.51219 -26.22417 -23.92671 -23.58127 -22.52540 -21.26761 -20.99217 -20.35955 -19.73248 -19.15170 -16.83192 -16.04332 -15.91273 -15.34668 -15.10087 -15.05274 -14.75082 -14.64130 -14.32346 -14.11249 -13.98112 -13.71377 -13.56949 -13.05435 -12.81238 -12.50538 -12.39094 -12.22796 -12.12945 -12.00615 -11.92864 -11.83704 -11.28498 -11.27953 -11.22992 -11.01254 -10.98066 -10.76268 -10.72109 -10.42756 -10.38383 -10.15831 -10.02180 -9.64809 -9.35528 -8.71421 -8.34050 -8.25117 -7.94545 -7.65692 -7.36662 -6.13009 -4.29325 2.57942 2.64571 3.17982 3.28223 3.28713 3.73344 4.18182 4.32042 4.53191 4.62840 4.68249 4.71028 5.03219 5.07699 5.14846 5.22190 5.28805 5.31564 5.40273 5.43976 5.52574 5.53704 5.61380 5.72000 5.75315 5.85538 5.88541 5.93068 5.98219 6.00530 6.06294 6.08206 6.11045 6.25195 6.30467 6.35652 6.43808 6.61915 6.71028 6.83959 6.93656 7.06106 7.10010 7.16672 7.24755 7.55308 7.59889 7.67424 7.69659 7.82025 8.19509 8.30113 8.62899 8.83056 9.37097 9.73352 10.87255 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003006 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.672653 B = 9312.953336 C =10319.632525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.110 4.110 4 C 0.055 3.945 5 N -0.533 5.533 6 C 0.046 3.954 7 C 0.126 3.874 8 N -0.737 5.737 9 C 0.551 3.449 10 O -0.547 6.547 11 C 0.057 3.943 12 H 0.056 0.944 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.075 3.925 16 N -0.841 5.841 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.014 4.014 22 C -0.065 4.065 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.100 4.100 27 C 0.044 3.956 28 C -0.111 4.111 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.395 0.605 42 H 0.264 0.736 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.032 0.968 50 H 0.065 0.935 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.089 7.470 3.862 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.258 5.258 6 C -0.082 4.082 7 C 0.001 3.999 8 N -0.390 5.390 9 C 0.340 3.660 10 O -0.424 6.424 11 C 0.035 3.965 12 H 0.074 0.926 13 C -0.578 4.578 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.473 5.473 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.015 4.015 22 C -0.083 4.083 23 C -0.166 4.166 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.118 4.118 27 C -0.083 4.083 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.228 0.772 42 H 0.074 0.926 43 H 0.145 0.855 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.125 0.875 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.084 0.916 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.881 6.938 2.938 13.235 hybrid contribution 0.869 -0.818 2.107 2.421 sum -10.012 6.121 5.045 12.774 Atomic orbital electron populations 1.21804 0.95228 1.01585 1.01614 1.21202 0.95490 0.96302 0.98462 1.21630 0.94661 0.96484 1.01956 1.22081 0.95740 0.98921 0.90536 1.61948 1.12007 1.14439 1.37418 1.22277 0.87094 1.00675 0.98125 1.21149 0.82801 0.98625 0.97326 1.45734 1.06058 1.47573 1.39674 1.20987 0.90513 0.76984 0.77481 1.90536 1.68032 1.37629 1.46170 1.17879 0.89251 0.94779 0.94563 0.92562 1.20696 1.27979 1.02718 1.06395 0.91548 1.25047 0.94869 0.96378 0.97040 1.70076 1.32260 1.07990 1.37006 0.86693 0.79945 0.77929 0.84177 1.20712 1.21133 1.19569 1.19816 0.93170 0.95975 0.92521 1.21139 0.96370 0.93295 0.97535 1.20985 1.00601 1.00591 0.94435 1.20769 0.97843 1.00420 0.97313 1.20822 0.98079 0.98718 0.98647 1.20976 0.98168 0.99299 0.93372 1.22279 0.95488 0.88827 1.01748 1.21652 0.94856 1.00197 0.98129 0.92596 0.92804 0.92934 0.91703 0.91812 0.91052 0.95037 0.90796 0.94317 0.90267 0.92042 0.92223 0.77233 0.92568 0.85491 0.88084 0.88243 0.88117 0.87492 0.89394 0.94927 0.91646 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.20 37.15 0.34 -0.81 16 2 C -0.10 -0.91 2.79 -90.50 -0.25 -1.16 16 3 C -0.11 -1.02 5.38 -26.65 -0.14 -1.16 16 4 C 0.06 0.60 5.42 -3.84 -0.02 0.58 16 5 N -0.53 -6.85 4.81 -234.67 -1.13 -7.98 16 6 C 0.05 0.64 5.39 -3.83 -0.02 0.62 16 7 C 0.13 2.19 4.92 -4.04 -0.02 2.17 16 8 N -0.74 -14.48 5.45 -60.29 -0.33 -14.81 16 9 C 0.55 13.00 5.46 -10.98 -0.06 12.94 16 10 O -0.55 -14.62 13.95 5.56 0.08 -14.54 16 11 C 0.06 1.33 2.78 -94.07 -0.26 1.06 16 12 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.54 -13.07 7.10 -34.44 -0.24 -13.31 16 14 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 15 C 0.07 1.87 4.00 -17.82 -0.07 1.80 16 16 N -0.84 -22.88 10.90 55.43 0.60 -22.28 16 17 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.01 -0.33 4.51 -104.63 -0.47 -0.80 16 22 C -0.07 -1.54 8.21 -39.58 -0.32 -1.86 16 23 C -0.15 -3.13 10.05 -39.58 -0.40 -3.52 16 24 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 25 C -0.14 -3.00 10.05 -39.58 -0.40 -3.40 16 26 C -0.10 -2.29 8.21 -39.58 -0.33 -2.62 16 27 C 0.04 0.58 4.85 -3.83 -0.02 0.56 16 28 C -0.11 -1.20 5.38 -26.64 -0.14 -1.34 16 29 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.04 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.17 6.21 -51.93 -0.32 0.85 16 41 H 0.39 6.99 8.35 -40.82 -0.34 6.65 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 43 H 0.13 3.07 6.04 -52.48 -0.32 2.76 16 44 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 47 H 0.11 2.43 7.01 -52.49 -0.37 2.06 16 48 H 0.09 1.29 5.81 -51.93 -0.30 0.99 16 49 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.07 0.79 8.14 -51.94 -0.42 0.37 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -29.22 395.48 -11.87 -41.08 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -8.80 Total: 11.41 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -3.23 Total: -13.57 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.85 Total: -45.07 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.22 -11.87 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362086272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.218 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds