Wall clock time and date at job start Tue Mar 31 2020 16:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53113 * 109.52760 * 2 1 4 4 C 1.53037 * 109.28094 * 182.37856 * 3 2 1 5 5 N 1.46841 * 109.52664 * 59.17794 * 4 3 2 6 6 C 1.46890 * 111.00326 * 174.16344 * 5 4 3 7 7 C 1.53001 * 109.47299 * 169.99979 * 6 5 4 8 8 N 1.46504 * 109.46877 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99473 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00467 * 0.02562 * 9 8 7 11 11 C 1.50704 * 119.99740 * 180.27299 * 9 8 7 12 12 H 1.08998 * 109.47165 * 299.72881 * 11 9 8 13 13 C 1.50707 * 109.46796 * 59.72694 * 11 9 8 14 14 H 1.07998 * 119.99951 * 235.34209 * 13 11 9 15 15 C 1.37876 * 119.99655 * 55.34830 * 13 11 9 16 16 N 1.31511 * 120.00303 * 1.96912 * 15 13 11 17 17 Si 1.86797 * 119.99690 * 181.97781 * 15 13 11 18 18 H 1.48499 * 109.47598 * 89.99797 * 17 15 13 19 19 H 1.48507 * 109.47157 * 209.99494 * 17 15 13 20 20 H 1.48501 * 109.47327 * 329.99125 * 17 15 13 21 21 C 1.50697 * 109.47046 * 179.72521 * 11 9 8 22 22 C 1.38233 * 120.00129 * 226.94781 * 21 11 9 23 23 C 1.38239 * 120.00256 * 179.79167 * 22 21 11 24 24 C 1.38238 * 119.99554 * 0.44155 * 23 22 21 25 25 C 1.38234 * 120.00140 * 359.80994 * 24 23 22 26 26 C 1.38235 * 120.00027 * 359.97438 * 25 24 23 27 27 C 1.46850 * 111.19809 * 298.25962 * 5 4 3 28 28 C 1.53047 * 109.52155 * 61.74197 * 27 5 4 29 29 H 1.09007 * 109.47234 * 59.99758 * 1 2 3 30 30 H 1.08995 * 109.47655 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47346 * 300.00146 * 1 2 3 32 32 H 1.09007 * 109.52269 * 120.12825 * 2 1 3 33 33 H 1.09005 * 109.50200 * 62.43577 * 3 2 1 34 34 H 1.08997 * 109.53608 * 302.34075 * 3 2 1 35 35 H 1.09007 * 109.45920 * 299.16083 * 4 3 2 36 36 H 1.09001 * 109.45573 * 179.19120 * 4 3 2 37 37 H 1.09004 * 109.47189 * 50.00038 * 6 5 4 38 38 H 1.09005 * 109.47135 * 290.00219 * 6 5 4 39 39 H 1.08999 * 109.46747 * 60.00349 * 7 6 5 40 40 H 1.08998 * 109.47049 * 299.99809 * 7 6 5 41 41 H 0.96993 * 120.00374 * 0.02562 * 8 7 6 42 42 H 0.97000 * 120.00222 * 179.97438 * 16 15 13 43 43 H 1.08003 * 120.00092 * 359.97438 * 22 21 11 44 44 H 1.07996 * 120.00589 * 180.27137 * 23 22 21 45 45 H 1.08001 * 120.00012 * 179.83701 * 24 23 22 46 46 H 1.08003 * 120.00204 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.00108 * 179.97438 * 26 25 24 48 48 H 1.09000 * 109.46180 * 181.75514 * 27 5 4 49 49 H 1.09000 * 109.46549 * 301.72875 * 27 5 4 50 50 H 1.09003 * 109.50005 * 180.88041 * 28 27 5 51 51 H 1.08989 * 109.50100 * 60.76023 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4369 -0.0600 5 7 4.0116 0.7424 -1.2764 6 6 5.4685 0.8371 -1.4382 7 6 5.9184 -0.0965 -2.5637 8 7 7.3714 -0.0015 -2.7255 9 6 7.9946 -0.7404 -3.6648 10 8 7.3525 -1.4836 -4.3764 11 6 9.4900 -0.6474 -3.8270 12 1 9.7652 0.3771 -4.0777 13 6 10.1609 -1.0467 -2.5380 14 1 10.8575 -0.3734 -2.0607 15 6 9.8854 -2.2716 -1.9681 16 7 9.0670 -3.1073 -2.5691 17 14 10.6744 -2.7438 -0.3422 18 1 9.8025 -2.3055 0.7771 19 1 10.8486 -4.2176 -0.2860 20 1 11.9997 -2.0841 -0.2249 21 6 9.9338 -1.5714 -4.9316 22 6 11.0156 -2.4100 -4.7384 23 6 11.4202 -3.2607 -5.7501 24 6 10.7484 -3.2663 -6.9583 25 6 9.6698 -2.4241 -7.1533 26 6 9.2625 -1.5766 -6.1400 27 6 3.5721 -0.6588 -1.2766 28 6 2.0429 -0.7152 -1.2530 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8942 -0.5157 0.8886 33 1 1.7152 1.9450 0.9109 34 1 1.6457 1.9703 -0.8679 35 1 3.9666 0.9222 0.8157 36 1 3.9378 2.4632 -0.0746 37 1 5.9570 0.5466 -0.5081 38 1 5.7406 1.8630 -1.6864 39 1 5.4300 0.1941 -3.4938 40 1 5.6464 -1.1224 -2.3155 41 1 7.8850 0.5925 -2.1561 42 1 8.8734 -3.9692 -2.1684 43 1 11.5431 -2.4026 -3.7959 44 1 12.2626 -3.9190 -5.5976 45 1 11.0660 -3.9291 -7.7497 46 1 9.1447 -2.4288 -8.0971 47 1 8.4201 -0.9182 -6.2926 48 1 3.9400 -1.1547 -2.1748 49 1 3.9677 -1.1637 -0.3952 50 1 1.7173 -1.7553 -1.2374 51 1 1.6469 -0.2226 -2.1410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362086272.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:51 Heat of formation + Delta-G solvation = -37.294939 kcal Electronic energy + Delta-G solvation = -28757.300454 eV Core-core repulsion = 25040.944547 eV Total energy + Delta-G solvation = -3716.355907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80268 -40.21706 -39.06915 -36.56958 -35.47421 -34.63096 -32.64679 -31.90065 -31.34460 -30.60008 -29.04446 -27.50682 -25.69483 -24.63539 -23.53229 -22.94609 -22.30996 -21.86250 -20.94933 -20.58159 -18.65982 -17.54337 -17.31361 -16.95754 -16.72053 -16.45290 -16.18840 -15.76693 -15.57197 -15.39594 -15.23263 -15.06541 -14.88869 -14.61609 -14.18743 -13.94746 -13.90715 -13.72926 -13.44067 -13.34402 -13.01132 -12.96365 -12.78937 -12.75741 -12.55765 -12.41420 -12.28393 -12.23456 -12.11428 -11.76387 -11.55367 -11.41182 -11.20840 -11.15675 -11.09448 -10.65521 -10.17405 -9.65998 -9.37474 -9.35764 -9.09183 -8.07145 -6.27033 0.88638 0.93951 1.39153 1.44518 1.51640 2.30835 2.41868 2.57847 3.13242 3.20252 3.38697 3.74666 3.85262 3.87170 3.94178 4.10720 4.29536 4.34622 4.36506 4.40025 4.42787 4.49647 4.51264 4.57275 4.65079 4.71357 4.75317 4.79819 4.83194 4.90630 4.95573 4.96907 5.00895 5.02366 5.11782 5.13242 5.17972 5.21764 5.26475 5.34551 5.46508 5.53237 5.55365 5.70171 5.86598 5.90566 5.95452 5.98986 6.05151 6.10608 6.43428 6.53850 6.76208 7.08860 7.41907 7.93164 8.91586 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003006 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.672653 B = 9312.953336 C =10319.632525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.105 4.105 4 C 0.052 3.948 5 N -0.536 5.536 6 C 0.059 3.941 7 C 0.134 3.866 8 N -0.727 5.727 9 C 0.549 3.451 10 O -0.585 6.585 11 C 0.047 3.953 12 H 0.069 0.931 13 C -0.533 4.533 14 H 0.073 0.927 15 C 0.040 3.960 16 N -0.874 5.874 17 Si 0.940 3.060 18 H -0.280 1.280 19 H -0.295 1.295 20 H -0.260 1.260 21 C -0.036 4.036 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.118 4.118 27 C 0.045 3.955 28 C -0.107 4.107 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.405 0.595 42 H 0.254 0.746 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.138 0.862 46 H 0.129 0.871 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.021 0.979 50 H 0.069 0.931 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 8.322 4.378 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.143 4.143 4 C -0.075 4.075 5 N -0.262 5.262 6 C -0.069 4.069 7 C 0.010 3.990 8 N -0.380 5.380 9 C 0.338 3.662 10 O -0.464 6.464 11 C 0.026 3.974 12 H 0.087 0.913 13 C -0.571 4.571 14 H 0.091 0.909 15 C -0.164 4.164 16 N -0.508 5.508 17 Si 0.766 3.234 18 H -0.206 1.206 19 H -0.222 1.222 20 H -0.184 1.184 21 C -0.037 4.037 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.137 4.137 27 C -0.083 4.083 28 C -0.144 4.144 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.240 0.760 42 H 0.063 0.937 43 H 0.130 0.870 44 H 0.144 0.856 45 H 0.156 0.844 46 H 0.147 0.853 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.040 0.960 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.034 7.842 3.489 13.979 hybrid contribution 0.939 -1.062 1.885 2.358 sum -10.095 6.780 5.374 13.295 Atomic orbital electron populations 1.21762 0.93781 1.01965 1.02291 1.21196 0.96660 0.96234 0.97240 1.21624 0.93309 0.96399 1.02924 1.22210 0.96962 0.99155 0.89182 1.62010 1.11011 1.14230 1.38917 1.22143 0.87982 1.00481 0.96303 1.21105 0.81333 0.98185 0.98406 1.45634 1.07133 1.46641 1.38620 1.21049 0.90658 0.76792 0.77690 1.90503 1.68737 1.39397 1.47782 1.18000 0.89230 0.95594 0.94550 0.91278 1.20902 1.27332 1.02481 1.06357 0.90891 1.25574 0.95126 0.96352 0.99396 1.70249 1.34226 1.07986 1.38330 0.85831 0.79622 0.76913 0.81015 1.20614 1.22191 1.18382 1.19947 0.93896 0.96795 0.93104 1.21128 0.96849 0.94654 0.97884 1.21317 1.01287 1.00093 0.94290 1.21180 0.96862 1.00146 0.97770 1.21196 0.98297 0.97818 0.99174 1.21040 0.98282 1.00350 0.93990 1.22221 0.97163 0.88885 0.99990 1.21630 0.92972 1.00800 0.99042 0.92422 0.92637 0.91729 0.92058 0.89790 0.91133 0.95381 0.89454 0.94565 0.88351 0.92859 0.94848 0.76020 0.93654 0.86968 0.85560 0.84412 0.85286 0.88342 0.91850 0.96040 0.91275 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.09 -1.66 2.79 -10.72 -0.03 -1.69 16 3 C -0.10 -1.73 5.38 30.64 0.16 -1.57 16 4 C 0.05 1.05 5.42 86.33 0.47 1.51 16 5 N -0.54 -13.54 4.81 -896.35 -4.31 -17.85 16 6 C 0.06 1.61 5.39 86.31 0.46 2.08 16 7 C 0.13 4.83 4.92 86.38 0.43 5.25 16 8 N -0.73 -29.12 5.45 -463.04 -2.52 -31.64 16 9 C 0.55 26.58 5.46 87.66 0.48 27.06 16 10 O -0.58 -32.43 13.95 -3.03 -0.04 -32.47 16 11 C 0.05 2.26 2.78 -13.03 -0.04 2.23 16 12 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 13 C -0.53 -25.87 7.10 25.60 0.18 -25.69 16 14 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 15 C 0.04 2.02 4.00 84.66 0.34 2.36 16 16 N -0.87 -48.71 10.90 21.45 0.23 -48.48 16 17 Si 0.94 40.72 29.54 68.60 2.03 42.75 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.04 -1.78 4.51 -19.87 -0.09 -1.87 16 22 C -0.09 -4.12 8.21 22.27 0.18 -3.93 16 23 C -0.15 -6.22 10.05 22.27 0.22 -6.00 16 24 C -0.14 -5.35 10.05 22.27 0.22 -5.13 16 25 C -0.15 -5.91 10.05 22.27 0.22 -5.69 16 26 C -0.12 -5.48 8.21 22.27 0.18 -5.30 16 27 C 0.05 1.22 4.85 86.33 0.42 1.64 16 28 C -0.11 -2.28 5.38 30.65 0.16 -2.12 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 37 H 0.04 1.02 8.08 -2.38 -0.02 1.00 16 38 H 0.10 2.33 8.14 -2.38 -0.02 2.32 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.03 1.39 6.21 -2.39 -0.01 1.37 16 41 H 0.40 14.31 8.35 -92.71 -0.77 13.53 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.11 5.52 6.04 -2.91 -0.02 5.50 16 44 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 45 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 46 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 47 H 0.10 4.62 7.01 -2.91 -0.02 4.60 16 48 H 0.06 2.00 5.81 -2.39 -0.01 1.98 16 49 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -63.83 395.48 0.16 -63.67 By element: Atomic # 1 Polarization: 42.05 SS G_CDS: 0.12 Total: 42.18 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.65 Total: -18.15 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -6.60 Total: -97.97 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -0.04 Total: -32.47 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -63.83 0.16 -63.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362086272.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.372 kcal (2) G-P(sol) polarization free energy of solvation -63.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds