Wall clock time and date at job start Tue Mar 31 2020 16:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46845 * 111.00051 * 2 1 4 4 C 1.53036 * 109.52074 * 185.83510 * 3 2 1 5 5 C 1.53113 * 109.28201 * 300.81781 * 4 3 2 6 6 C 1.52995 * 109.52575 * 297.68793 * 5 4 3 7 7 C 1.53000 * 109.52705 * 177.56013 * 5 4 3 8 8 N 1.46493 * 109.47675 * 180.12994 * 7 5 4 9 9 C 1.34774 * 120.00333 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00042 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47111 * 299.99358 * 11 9 8 13 13 C 1.50694 * 109.47581 * 59.99538 * 11 9 8 14 14 H 1.08000 * 120.00061 * 26.77124 * 13 11 9 15 15 C 1.37881 * 120.00094 * 206.77727 * 13 11 9 16 16 N 1.31511 * 120.00067 * 353.45724 * 15 13 11 17 17 Si 1.86804 * 119.99818 * 173.46276 * 15 13 11 18 18 H 1.48505 * 109.47005 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47038 * 299.99602 * 17 15 13 20 20 H 1.48498 * 109.47233 * 59.99667 * 17 15 13 21 21 C 1.50704 * 109.47238 * 179.97438 * 11 9 8 22 22 C 1.38232 * 119.99675 * 292.96854 * 21 11 9 23 23 C 1.38241 * 119.99751 * 179.78820 * 22 21 11 24 24 C 1.38237 * 119.99639 * 0.43314 * 23 22 21 25 25 C 1.38232 * 120.00323 * 359.82301 * 24 23 22 26 26 C 1.38232 * 119.99964 * 359.96440 * 25 24 23 27 27 C 1.53121 * 109.21293 * 57.62375 * 5 4 3 28 28 C 1.46852 * 110.99700 * 124.20672 * 2 1 3 29 29 H 1.09004 * 109.46834 * 60.00202 * 1 2 3 30 30 H 1.09003 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47360 * 300.00101 * 1 2 3 32 32 H 1.09000 * 109.46419 * 65.81981 * 3 2 1 33 33 H 1.08991 * 109.45286 * 305.84809 * 3 2 1 34 34 H 1.09010 * 109.50167 * 180.88104 * 4 3 2 35 35 H 1.08999 * 109.50128 * 60.76576 * 4 3 2 36 36 H 1.09001 * 109.47098 * 299.87109 * 6 5 4 37 37 H 1.09008 * 109.47069 * 59.87078 * 6 5 4 38 38 H 1.08996 * 109.47235 * 179.86807 * 6 5 4 39 39 H 1.08998 * 109.46889 * 60.12205 * 7 5 4 40 40 H 1.09002 * 109.46697 * 300.13154 * 7 5 4 41 41 H 0.97006 * 119.99461 * 359.97438 * 8 7 5 42 42 H 0.97003 * 120.00089 * 354.55726 * 16 15 13 43 43 H 1.08002 * 120.00384 * 359.97438 * 22 21 11 44 44 H 1.07998 * 119.99946 * 180.27265 * 23 22 21 45 45 H 1.08003 * 120.00045 * 179.83127 * 24 23 22 46 46 H 1.08000 * 120.00189 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00163 * 180.02562 * 26 25 24 48 48 H 1.09006 * 109.50113 * 62.31374 * 27 5 4 49 49 H 1.08996 * 109.50650 * 182.43259 * 27 5 4 50 50 H 1.09003 * 109.46501 * 294.17877 * 28 2 1 51 51 H 1.09006 * 109.46113 * 54.15426 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1466 5 6 4.1188 0.5370 1.0145 6 6 3.7971 1.2375 2.3361 7 6 5.6361 0.4449 0.8408 8 7 6.2092 -0.3206 1.9506 9 6 7.5391 -0.5311 2.0081 10 8 8.2614 -0.0873 1.1409 11 6 8.1286 -1.3191 3.1495 12 1 7.9000 -0.8205 4.0915 13 6 7.5396 -2.7061 3.1595 14 1 7.1767 -3.1453 2.2421 15 6 7.4640 -3.4145 4.3401 16 7 8.0203 -2.9354 5.4312 17 14 6.5714 -5.0547 4.3895 18 1 6.6330 -5.6105 5.7652 19 1 5.1527 -4.8582 3.9975 20 1 7.2196 -5.9997 3.4449 21 6 9.6231 -1.4097 2.9784 22 6 10.1559 -2.1321 1.9272 23 6 11.5268 -2.2116 1.7677 24 6 12.3649 -1.5760 2.6647 25 6 11.8322 -0.8580 3.7189 26 6 10.4613 -0.7748 3.8759 27 6 3.5183 -0.8716 1.0227 28 6 1.9952 -0.7708 1.1338 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7324 1.8609 0.9375 33 1 1.5635 1.9255 -0.8330 34 1 3.9100 2.3512 -0.1309 35 1 3.7814 0.8567 -1.0905 36 1 4.2231 2.2408 2.3285 37 1 2.7160 1.3026 2.4590 38 1 4.2230 0.6681 3.1622 39 1 6.0624 1.4480 0.8328 40 1 5.8642 -0.0543 -0.1010 41 1 5.6315 -0.6753 2.6444 42 1 8.5506 -2.1243 5.3893 43 1 9.5011 -2.6320 1.2288 44 1 11.9429 -2.7724 0.9439 45 1 13.4360 -1.6404 2.5417 46 1 12.4870 -0.3618 4.4199 47 1 10.0451 -0.2135 4.6993 48 1 3.7815 -1.3847 0.0977 49 1 3.9101 -1.4294 1.8731 50 1 1.7324 -0.2708 2.0661 51 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362680548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:58 Heat of formation + Delta-G solvation = -28.240315 kcal Electronic energy + Delta-G solvation = -29205.226316 eV Core-core repulsion = 25489.263047 eV Total energy + Delta-G solvation = -3715.963269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10283 -39.04748 -37.75391 -35.70908 -33.94808 -32.74453 -30.96924 -30.84613 -30.02002 -28.68290 -27.59531 -26.46492 -24.67733 -23.63783 -23.27963 -21.70898 -21.58481 -20.71124 -19.45919 -18.36821 -17.39251 -16.41175 -15.85552 -15.60233 -15.31488 -15.22927 -15.02679 -14.60317 -14.44544 -14.12563 -13.86053 -13.79499 -13.58492 -13.41303 -12.87087 -12.59245 -12.55857 -12.38075 -12.23385 -12.15859 -12.08178 -11.82601 -11.68053 -11.55469 -11.53886 -11.15540 -10.95930 -10.84733 -10.56115 -10.41267 -10.28341 -10.24004 -10.21019 -10.14011 -8.98463 -8.79202 -8.62248 -8.43399 -8.34332 -8.02081 -7.64463 -6.55058 -4.32275 2.28959 2.33975 3.33437 3.36416 3.54355 3.65551 3.78356 3.99421 4.39701 4.60812 4.64054 4.74687 4.79409 5.01760 5.13280 5.16253 5.17039 5.20274 5.33128 5.39653 5.47139 5.57434 5.64355 5.64568 5.66441 5.70513 5.77437 5.79310 5.83082 5.89784 5.94950 6.04042 6.07903 6.09399 6.15839 6.21900 6.36213 6.41165 6.43324 6.47848 6.63681 6.88487 6.91810 6.94061 6.98388 7.18472 7.29526 7.36412 7.59817 7.83687 7.96266 8.20806 8.32960 8.61574 9.18211 9.40050 10.82428 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003568 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.036984 B = 7844.574798 C = 9265.166007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.103 4.103 5 C -0.071 4.071 6 C -0.146 4.146 7 C 0.134 3.866 8 N -0.726 5.726 9 C 0.532 3.468 10 O -0.566 6.566 11 C 0.043 3.957 12 H 0.063 0.937 13 C -0.591 4.591 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.895 5.895 17 Si 1.065 2.935 18 H -0.282 1.282 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.019 4.019 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.108 4.108 28 C 0.055 3.945 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.403 0.597 42 H 0.275 0.725 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.036 0.964 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.689 6.875 -6.609 14.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.141 4.141 5 C -0.072 4.072 6 C -0.203 4.203 7 C 0.010 3.990 8 N -0.380 5.380 9 C 0.321 3.679 10 O -0.444 6.444 11 C 0.022 3.978 12 H 0.081 0.919 13 C -0.629 4.629 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.528 5.528 17 Si 0.892 3.108 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.020 4.020 22 C -0.096 4.096 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.073 4.073 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.239 0.761 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.054 0.946 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.501 5.758 -6.622 13.685 hybrid contribution -0.005 1.356 0.051 1.356 sum -10.507 7.114 -6.571 14.289 Atomic orbital electron populations 1.22340 0.87595 1.02000 1.00356 1.61928 1.07231 1.13799 1.43845 1.22098 0.95572 0.89129 1.00335 1.21570 0.94009 1.00045 0.98514 1.20811 0.94484 0.96057 0.95843 1.21977 1.01125 1.00507 0.96690 1.21193 0.90920 0.96118 0.90789 1.45938 1.08300 1.56513 1.27224 1.21249 0.81298 0.77838 0.87503 1.90586 1.60315 1.51972 1.41576 1.18159 0.88914 0.97345 0.93371 0.91935 1.21560 1.44832 0.98912 0.97596 0.92425 1.25827 0.96375 1.03364 0.91913 1.70769 1.29399 1.22945 1.29722 0.83594 0.75939 0.74962 0.76266 1.20676 1.21148 1.21250 1.20130 0.96319 0.92739 0.92837 1.20798 0.93930 0.97431 0.97463 1.20990 0.94004 1.00783 0.99302 1.20819 0.98500 1.00534 0.96594 1.20879 0.95033 1.00531 0.98251 1.20969 0.93337 1.00661 0.99700 1.21667 0.93573 0.95910 1.03434 1.22155 0.95930 0.98005 0.91212 0.91550 0.91421 0.95910 0.94623 0.91007 0.91303 0.90778 0.92554 0.92637 0.92031 0.92404 0.92152 0.76072 0.91390 0.86981 0.87418 0.87532 0.87419 0.87355 0.90812 0.90502 0.94556 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.59 60.07 0.58 0.79 16 2 N -0.54 -5.65 4.91 -242.95 -1.19 -6.85 16 3 C 0.06 0.54 5.22 -3.84 -0.02 0.52 16 4 C -0.10 -1.07 4.88 -26.65 -0.13 -1.20 16 5 C -0.07 -0.85 0.53 -154.39 -0.08 -0.93 16 6 C -0.15 -1.65 7.73 37.16 0.29 -1.36 16 7 C 0.13 2.03 4.57 -4.05 -0.02 2.02 16 8 N -0.73 -13.09 4.88 -60.30 -0.29 -13.38 16 9 C 0.53 11.81 7.04 -10.99 -0.08 11.73 16 10 O -0.57 -13.89 15.46 5.56 0.09 -13.80 16 11 C 0.04 1.03 1.92 -94.08 -0.18 0.85 16 12 H 0.06 1.53 6.82 -51.93 -0.35 1.18 16 13 C -0.59 -14.82 7.42 -34.44 -0.26 -15.07 16 14 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 15 C 0.03 0.84 5.45 -17.82 -0.10 0.74 16 16 N -0.89 -24.67 13.56 55.43 0.75 -23.92 16 17 Si 1.06 23.23 29.91 -169.99 -5.08 18.15 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.02 -0.46 4.03 -104.62 -0.42 -0.88 16 22 C -0.08 -1.80 8.36 -39.58 -0.33 -2.13 16 23 C -0.13 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 25 C -0.13 -2.52 10.05 -39.59 -0.40 -2.92 16 26 C -0.13 -2.82 9.25 -39.58 -0.37 -3.18 16 27 C -0.11 -1.33 4.68 -26.65 -0.12 -1.46 16 28 C 0.05 0.59 5.21 -3.83 -0.02 0.57 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.34 6.51 -51.93 -0.34 0.00 16 33 H 0.07 0.62 8.12 -51.93 -0.42 0.19 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.57 4.93 -51.92 -0.26 0.32 16 38 H 0.06 0.76 6.86 -51.93 -0.36 0.40 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.40 6.97 6.08 -40.82 -0.25 6.72 16 42 H 0.27 7.53 6.30 -40.82 -0.26 7.27 16 43 H 0.11 2.64 7.86 -52.49 -0.41 2.23 16 44 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 46 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 47 H 0.11 2.24 7.96 -52.49 -0.42 1.82 16 48 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.03 6.95 -51.93 -0.36 0.67 16 50 H 0.04 0.39 6.52 -51.93 -0.34 0.05 16 51 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -29.65 394.28 -10.70 -40.36 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.46 Total: 11.66 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -2.45 Total: -18.16 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.74 Total: -44.15 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.08 Total: 18.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.65 -10.70 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362680548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.118 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds