Wall clock time and date at job start Tue Mar 31 2020 16:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46845 * 111.00051 * 2 1 4 4 C 1.53036 * 109.52074 * 185.83510 * 3 2 1 5 5 C 1.53113 * 109.28201 * 300.81781 * 4 3 2 6 6 C 1.52995 * 109.52575 * 297.68793 * 5 4 3 7 7 C 1.53000 * 109.52705 * 177.56013 * 5 4 3 8 8 N 1.46493 * 109.47675 * 180.12994 * 7 5 4 9 9 C 1.34774 * 120.00333 * 180.02562 * 8 7 5 10 10 O 1.21279 * 119.99959 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00042 * 180.02562 * 9 8 7 12 12 H 1.09002 * 109.47111 * 299.99358 * 11 9 8 13 13 C 1.50694 * 109.47581 * 59.99538 * 11 9 8 14 14 H 1.08000 * 120.00061 * 26.77124 * 13 11 9 15 15 C 1.37881 * 120.00094 * 206.77727 * 13 11 9 16 16 N 1.31511 * 120.00067 * 353.45724 * 15 13 11 17 17 Si 1.86804 * 119.99818 * 173.46276 * 15 13 11 18 18 H 1.48505 * 109.47005 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.47038 * 299.99602 * 17 15 13 20 20 H 1.48498 * 109.47233 * 59.99667 * 17 15 13 21 21 C 1.50704 * 109.47238 * 179.97438 * 11 9 8 22 22 C 1.38232 * 119.99675 * 292.96854 * 21 11 9 23 23 C 1.38241 * 119.99751 * 179.78820 * 22 21 11 24 24 C 1.38237 * 119.99639 * 0.43314 * 23 22 21 25 25 C 1.38232 * 120.00323 * 359.82301 * 24 23 22 26 26 C 1.38232 * 119.99964 * 359.96440 * 25 24 23 27 27 C 1.53121 * 109.21293 * 57.62375 * 5 4 3 28 28 C 1.46852 * 110.99700 * 124.20672 * 2 1 3 29 29 H 1.09004 * 109.46834 * 60.00202 * 1 2 3 30 30 H 1.09003 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47360 * 300.00101 * 1 2 3 32 32 H 1.09000 * 109.46419 * 65.81981 * 3 2 1 33 33 H 1.08991 * 109.45286 * 305.84809 * 3 2 1 34 34 H 1.09010 * 109.50167 * 180.88104 * 4 3 2 35 35 H 1.08999 * 109.50128 * 60.76576 * 4 3 2 36 36 H 1.09001 * 109.47098 * 299.87109 * 6 5 4 37 37 H 1.09008 * 109.47069 * 59.87078 * 6 5 4 38 38 H 1.08996 * 109.47235 * 179.86807 * 6 5 4 39 39 H 1.08998 * 109.46889 * 60.12205 * 7 5 4 40 40 H 1.09002 * 109.46697 * 300.13154 * 7 5 4 41 41 H 0.97006 * 119.99461 * 359.97438 * 8 7 5 42 42 H 0.97003 * 120.00089 * 354.55726 * 16 15 13 43 43 H 1.08002 * 120.00384 * 359.97438 * 22 21 11 44 44 H 1.07998 * 119.99946 * 180.27265 * 23 22 21 45 45 H 1.08003 * 120.00045 * 179.83127 * 24 23 22 46 46 H 1.08000 * 120.00189 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00163 * 180.02562 * 26 25 24 48 48 H 1.09006 * 109.50113 * 62.31374 * 27 5 4 49 49 H 1.08996 * 109.50650 * 182.43259 * 27 5 4 50 50 H 1.09003 * 109.46501 * 294.17877 * 28 2 1 51 51 H 1.09006 * 109.46113 * 54.15426 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 -0.1466 5 6 4.1188 0.5370 1.0145 6 6 3.7971 1.2375 2.3361 7 6 5.6361 0.4449 0.8408 8 7 6.2092 -0.3206 1.9506 9 6 7.5391 -0.5311 2.0081 10 8 8.2614 -0.0873 1.1409 11 6 8.1286 -1.3191 3.1495 12 1 7.9000 -0.8205 4.0915 13 6 7.5396 -2.7061 3.1595 14 1 7.1767 -3.1453 2.2421 15 6 7.4640 -3.4145 4.3401 16 7 8.0203 -2.9354 5.4312 17 14 6.5714 -5.0547 4.3895 18 1 6.6330 -5.6105 5.7652 19 1 5.1527 -4.8582 3.9975 20 1 7.2196 -5.9997 3.4449 21 6 9.6231 -1.4097 2.9784 22 6 10.1559 -2.1321 1.9272 23 6 11.5268 -2.2116 1.7677 24 6 12.3649 -1.5760 2.6647 25 6 11.8322 -0.8580 3.7189 26 6 10.4613 -0.7748 3.8759 27 6 3.5183 -0.8716 1.0227 28 6 1.9952 -0.7708 1.1338 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7324 1.8609 0.9375 33 1 1.5635 1.9255 -0.8330 34 1 3.9100 2.3512 -0.1309 35 1 3.7814 0.8567 -1.0905 36 1 4.2231 2.2408 2.3285 37 1 2.7160 1.3026 2.4590 38 1 4.2230 0.6681 3.1622 39 1 6.0624 1.4480 0.8328 40 1 5.8642 -0.0543 -0.1010 41 1 5.6315 -0.6753 2.6444 42 1 8.5506 -2.1243 5.3893 43 1 9.5011 -2.6320 1.2288 44 1 11.9429 -2.7724 0.9439 45 1 13.4360 -1.6404 2.5417 46 1 12.4870 -0.3618 4.4199 47 1 10.0451 -0.2135 4.6993 48 1 3.7815 -1.3847 0.0977 49 1 3.9101 -1.4294 1.8731 50 1 1.7324 -0.2708 2.0661 51 1 1.5634 -1.7716 1.1242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362680548.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:57 Heat of formation + Delta-G solvation = -44.980868 kcal Electronic energy + Delta-G solvation = -29205.952241 eV Core-core repulsion = 25489.263047 eV Total energy + Delta-G solvation = -3716.689194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.32951 -40.51895 -39.34035 -36.83789 -35.85570 -34.11253 -32.65473 -31.85774 -31.65112 -29.79795 -28.97560 -27.72665 -25.88092 -25.30558 -24.22731 -23.28702 -22.80392 -22.12114 -21.17387 -19.43161 -19.14320 -17.91708 -17.52279 -16.91533 -16.68417 -16.22105 -16.06008 -15.90316 -15.69876 -15.59627 -15.55793 -15.08849 -14.85540 -14.70277 -14.35649 -14.16575 -14.02337 -13.83208 -13.40080 -13.32503 -13.23421 -13.01478 -12.91233 -12.81566 -12.58648 -12.56603 -12.41600 -12.04784 -11.97278 -11.93046 -11.80554 -11.56724 -11.36301 -11.20203 -10.89945 -10.63247 -10.54866 -9.93584 -9.66793 -9.34739 -9.20409 -8.61087 -6.38097 0.64152 0.70144 1.56051 1.61653 1.81137 1.85995 2.47004 2.57431 3.01659 3.09279 3.20666 3.59321 3.67280 3.79170 4.09308 4.18082 4.20611 4.21120 4.28155 4.32523 4.36536 4.38583 4.40745 4.46574 4.58834 4.64159 4.67026 4.69399 4.75378 4.77916 4.80676 4.83281 4.90037 4.93507 5.01296 5.03911 5.04866 5.07919 5.22788 5.24949 5.30831 5.32673 5.45579 5.61493 5.68310 5.71898 5.75017 6.05142 6.13884 6.15538 6.18164 6.30307 6.53965 6.69562 7.39853 7.45130 8.76709 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013038 B = 0.003568 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.036984 B = 7844.574798 C = 9265.166007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.557 5.557 3 C 0.059 3.941 4 C -0.100 4.100 5 C -0.061 4.061 6 C -0.142 4.142 7 C 0.135 3.865 8 N -0.712 5.712 9 C 0.529 3.471 10 O -0.593 6.593 11 C 0.044 3.956 12 H 0.046 0.954 13 C -0.586 4.586 14 H 0.047 0.953 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 1.104 2.896 18 H -0.286 1.286 19 H -0.261 1.261 20 H -0.281 1.281 21 C -0.047 4.047 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.141 4.141 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.106 4.106 28 C 0.060 3.940 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.407 0.593 42 H 0.265 0.735 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.109 0.891 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.041 0.959 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 7.260 -7.103 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.282 5.282 3 C -0.069 4.069 4 C -0.138 4.138 5 C -0.062 4.062 6 C -0.199 4.199 7 C 0.012 3.988 8 N -0.364 5.364 9 C 0.317 3.683 10 O -0.474 6.474 11 C 0.022 3.978 12 H 0.064 0.936 13 C -0.624 4.624 14 H 0.065 0.935 15 C -0.209 4.209 16 N -0.556 5.556 17 Si 0.927 3.073 18 H -0.212 1.212 19 H -0.186 1.186 20 H -0.207 1.207 21 C -0.048 4.048 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.144 4.144 28 C -0.068 4.068 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.244 0.756 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.161 0.839 47 H 0.127 0.873 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.059 0.941 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.975 6.163 -7.131 14.466 hybrid contribution 0.193 1.284 0.146 1.307 sum -10.781 7.447 -6.984 14.849 Atomic orbital electron populations 1.22383 0.86178 1.02517 1.01150 1.61923 1.08584 1.14209 1.43497 1.22110 0.94530 0.88956 1.01269 1.21553 0.94945 1.00193 0.97101 1.20741 0.91792 0.96423 0.97233 1.21940 1.02082 1.00341 0.95510 1.21348 0.93291 0.95165 0.89035 1.45862 1.07029 1.55688 1.27795 1.21071 0.82470 0.77808 0.86909 1.90552 1.61268 1.53267 1.42346 1.18089 0.89861 0.96726 0.93090 0.93602 1.21619 1.44221 0.99521 0.97004 0.93500 1.26978 0.96532 1.05765 0.91609 1.70860 1.30957 1.23293 1.30533 0.83088 0.76442 0.71775 0.76008 1.21172 1.18607 1.20706 1.20197 0.96241 0.94261 0.94080 1.20824 0.95432 0.98723 0.97649 1.21362 0.92870 1.00606 1.00359 1.21314 1.00550 0.98729 0.95247 1.21323 0.94296 0.99902 0.98899 1.21167 0.94769 1.01300 0.99677 1.21608 0.95123 0.95723 1.01983 1.22061 0.94420 0.98521 0.91770 0.90439 0.91135 0.95364 0.94061 0.89488 0.90097 0.91541 0.92027 0.91082 0.93419 0.92516 0.93420 0.75609 0.92403 0.88938 0.84522 0.83217 0.83899 0.87332 0.92184 0.92059 0.94108 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.59 127.69 1.22 1.59 16 2 N -0.56 -10.55 4.91 -922.56 -4.53 -15.08 16 3 C 0.06 0.99 5.22 86.33 0.45 1.45 16 4 C -0.10 -1.94 4.88 30.64 0.15 -1.79 16 5 C -0.06 -1.44 0.53 -52.10 -0.03 -1.46 16 6 C -0.14 -3.07 7.73 71.98 0.56 -2.51 16 7 C 0.14 4.20 4.57 86.38 0.39 4.59 16 8 N -0.71 -26.68 4.88 -463.08 -2.26 -28.94 16 9 C 0.53 24.54 7.04 87.66 0.62 25.15 16 10 O -0.59 -30.27 15.46 -3.03 -0.05 -30.31 16 11 C 0.04 2.17 1.92 -13.03 -0.03 2.14 16 12 H 0.05 2.39 6.82 -2.39 -0.02 2.37 16 13 C -0.59 -30.42 7.42 25.60 0.19 -30.23 16 14 H 0.05 2.48 7.82 -2.91 -0.02 2.46 16 15 C -0.01 -0.38 5.45 84.66 0.46 0.08 16 16 N -0.92 -52.11 13.56 21.45 0.29 -51.82 16 17 Si 1.10 47.09 29.91 68.60 2.05 49.15 16 18 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.05 -2.29 4.03 -19.86 -0.08 -2.37 16 22 C -0.11 -5.11 8.36 22.27 0.19 -4.92 16 23 C -0.13 -5.26 10.05 22.27 0.22 -5.03 16 24 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 25 C -0.13 -4.71 10.05 22.27 0.22 -4.49 16 26 C -0.15 -6.71 9.25 22.27 0.21 -6.50 16 27 C -0.11 -2.62 4.68 30.65 0.14 -2.48 16 28 C 0.06 1.23 5.21 86.33 0.45 1.68 16 29 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 31 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.04 0.67 6.51 -2.39 -0.02 0.65 16 33 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.34 4.93 -2.38 -0.01 1.32 16 38 H 0.05 1.16 6.86 -2.39 -0.02 1.15 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.41 14.65 6.08 -92.70 -0.56 14.09 16 42 H 0.27 15.12 6.30 -92.71 -0.58 14.54 16 43 H 0.09 4.59 7.86 -2.91 -0.02 4.56 16 44 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 46 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 47 H 0.11 4.65 7.96 -2.91 -0.02 4.63 16 48 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 49 H 0.06 1.68 6.95 -2.39 -0.02 1.66 16 50 H 0.04 0.80 6.52 -2.39 -0.02 0.79 16 51 H 0.08 1.53 8.09 -2.38 -0.02 1.51 16 Total: -1.00 -65.64 394.28 1.60 -64.04 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: 0.53 Total: 42.77 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 5.57 Total: -29.80 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -6.50 Total: -95.84 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.05 Total: 49.15 kcal Total: -65.64 1.60 -64.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362680548.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.059 kcal (2) G-P(sol) polarization free energy of solvation -65.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds