Wall clock time and date at job start Tue Mar 31 2020 15:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.01129 * 2 1 4 4 C 1.54313 * 109.88834 * 238.88707 * 2 1 3 5 5 C 1.55150 * 103.01834 * 262.87844 * 4 2 1 6 6 C 1.54903 * 101.64795 * 324.34698 * 5 4 2 7 7 N 1.47438 * 109.88424 * 121.11534 * 2 1 3 8 8 C 1.46898 * 110.99955 * 242.66271 * 7 2 1 9 9 C 1.53001 * 109.47273 * 174.38395 * 8 7 2 10 10 N 1.46502 * 109.47347 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00287 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00341 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.47460 * 310.32847 * 13 11 10 15 15 C 1.50703 * 109.46756 * 70.32291 * 13 11 10 16 16 H 1.07997 * 119.99982 * 55.09769 * 15 13 11 17 17 C 1.37878 * 119.99965 * 234.81958 * 15 13 11 18 18 N 1.31516 * 120.00046 * 176.97672 * 17 15 13 19 19 Si 1.86799 * 119.99944 * 356.98036 * 17 15 13 20 20 H 1.48493 * 109.47454 * 84.56467 * 19 17 15 21 21 H 1.48504 * 109.47181 * 204.56714 * 19 17 15 22 22 H 1.48502 * 109.47168 * 324.56050 * 19 17 15 23 23 C 1.50700 * 109.47380 * 190.32062 * 13 11 10 24 24 C 1.38232 * 119.99892 * 292.30865 * 23 13 11 25 25 C 1.38241 * 119.99567 * 179.80988 * 24 23 13 26 26 C 1.38228 * 120.00198 * 0.39416 * 25 24 23 27 27 C 1.38236 * 120.00074 * 359.85784 * 26 25 24 28 28 C 1.38235 * 120.00168 * 359.95781 * 27 26 25 29 29 H 1.09000 * 109.47364 * 298.88531 * 1 2 3 30 30 H 1.09005 * 109.46632 * 58.88675 * 1 2 3 31 31 H 1.08993 * 109.47206 * 178.88014 * 1 2 3 32 32 H 1.08996 * 109.47246 * 174.72472 * 3 2 1 33 33 H 1.09000 * 109.47174 * 294.72433 * 3 2 1 34 34 H 1.09000 * 109.46965 * 54.72413 * 3 2 1 35 35 H 1.09007 * 110.71032 * 21.25782 * 4 2 1 36 36 H 1.09004 * 110.70823 * 144.32507 * 4 2 1 37 37 H 1.08994 * 110.99025 * 82.43628 * 5 4 2 38 38 H 1.08997 * 110.99108 * 206.25911 * 5 4 2 39 39 H 1.08999 * 110.37746 * 278.23321 * 6 5 4 40 40 H 1.09004 * 110.37136 * 155.89880 * 6 5 4 41 41 H 1.08997 * 109.47484 * 54.38096 * 8 7 2 42 42 H 1.09007 * 109.47321 * 294.38312 * 8 7 2 43 43 H 1.09001 * 109.47223 * 60.00215 * 9 8 7 44 44 H 1.09000 * 109.46867 * 299.99759 * 9 8 7 45 45 H 0.97004 * 120.00013 * 359.97438 * 10 9 8 46 46 H 0.96997 * 119.99747 * 180.02562 * 18 17 15 47 47 H 1.07994 * 120.00355 * 359.97438 * 24 23 13 48 48 H 1.08003 * 119.99634 * 180.23250 * 25 24 23 49 49 H 1.08007 * 120.00312 * 179.83342 * 26 25 24 50 50 H 1.08001 * 120.00334 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00618 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7498 -1.2424 5 6 2.3501 -2.1709 -0.6941 6 6 2.8585 -1.8555 0.7348 7 7 2.0315 -0.7165 1.1870 8 6 2.8028 0.1814 2.0570 9 6 3.1863 -0.5575 3.3407 10 7 3.9550 0.3381 4.2086 11 6 4.4020 -0.0998 5.4022 12 8 4.1674 -1.2353 5.7581 13 6 5.1932 0.8213 6.2948 14 1 5.9947 1.2847 5.7196 15 6 4.2851 1.8916 6.8433 16 1 3.3865 1.6167 7.3755 17 6 4.6044 3.2217 6.6706 18 7 3.7827 4.1559 7.0968 19 14 6.2042 3.6968 5.8313 20 1 6.0119 3.6894 4.3589 21 1 6.6090 5.0563 6.2708 22 1 7.2635 2.7225 6.1972 23 6 5.7842 0.0315 7.4341 24 6 4.9577 -0.5160 8.3975 25 6 5.4996 -1.2437 9.4404 26 6 6.8684 -1.4170 9.5245 27 6 7.6953 -0.8650 8.5640 28 6 7.1532 -0.1405 7.5189 29 1 -0.3634 0.4964 0.8998 30 1 -0.3633 0.5311 -0.8799 31 1 -0.3633 -1.0274 -0.0201 32 1 3.1394 1.4289 0.0945 33 1 1.7741 1.9261 -0.9335 34 1 1.6203 1.9821 0.8390 35 1 1.2926 -0.7877 -2.0205 36 1 2.9650 -0.2824 -1.6187 37 1 1.4422 -2.7731 -0.6614 38 1 3.1230 -2.6641 -1.2835 39 1 3.9112 -1.5738 0.7095 40 1 2.7105 -2.7150 1.3885 41 1 2.1984 1.0534 2.3065 42 1 3.7065 0.5020 1.5385 43 1 3.7909 -1.4295 3.0912 44 1 2.2827 -0.8780 3.8592 45 1 4.1423 1.2464 3.9242 46 1 4.0072 5.0917 6.9750 47 1 3.8886 -0.3775 8.3339 48 1 4.8536 -1.6747 10.1910 49 1 7.2920 -1.9833 10.3408 50 1 8.7648 -1.0000 8.6298 51 1 7.7992 0.2911 6.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363286240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:37 Heat of formation + Delta-G solvation = -13.465065 kcal Electronic energy + Delta-G solvation = -28683.145748 eV Core-core repulsion = 24967.823182 eV Total energy + Delta-G solvation = -3715.322566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.09948 -39.21432 -37.84458 -34.75825 -33.62299 -32.58426 -32.09897 -31.51089 -30.11499 -28.33807 -27.62782 -26.85316 -25.35652 -23.65771 -22.62263 -21.83210 -21.25333 -20.65495 -19.44024 -18.63765 -17.17033 -16.43585 -16.22831 -15.98326 -15.68436 -15.37681 -14.93370 -14.58953 -14.38479 -14.14523 -13.76236 -13.64176 -13.49529 -13.19087 -12.94542 -12.89219 -12.69705 -12.59711 -12.25450 -12.17075 -11.97581 -11.80559 -11.77810 -11.56877 -11.22299 -11.18029 -11.12245 -11.08910 -10.86832 -10.79810 -10.65075 -10.46450 -10.15939 -9.99798 -9.49361 -9.02775 -8.70695 -8.40804 -8.35560 -8.11689 -7.80281 -6.31996 -4.34769 2.16830 2.23305 3.06815 3.20093 3.21035 3.52709 3.68155 4.17130 4.17851 4.41858 4.48417 4.65439 4.71359 5.00349 5.02487 5.03072 5.08592 5.20399 5.22027 5.36668 5.46572 5.54727 5.56506 5.57908 5.59357 5.61166 5.71366 5.73154 5.80156 5.81576 5.88208 5.93318 5.95722 6.03189 6.05518 6.15532 6.21575 6.26497 6.31086 6.39840 6.42431 6.75456 6.87458 6.92658 6.98422 7.17341 7.18936 7.26870 7.29079 7.61042 7.81254 8.19015 8.33030 8.71355 9.16658 9.25224 10.79507 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003270 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.251068 B = 8561.475742 C = 9832.158853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.094 3.906 3 C -0.167 4.167 4 C -0.133 4.133 5 C -0.129 4.129 6 C 0.039 3.961 7 N -0.516 5.516 8 C 0.038 3.962 9 C 0.126 3.874 10 N -0.732 5.732 11 C 0.531 3.469 12 O -0.561 6.561 13 C 0.028 3.972 14 H 0.063 0.937 15 C -0.506 4.506 16 H 0.084 0.916 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.866 3.134 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.026 4.026 24 C -0.072 4.072 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.399 0.601 46 H 0.269 0.731 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -7.286 -14.275 16.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.005 3.995 3 C -0.225 4.225 4 C -0.172 4.172 5 C -0.167 4.167 6 C -0.088 4.088 7 N -0.240 5.240 8 C -0.090 4.090 9 C 0.002 3.998 10 N -0.384 5.384 11 C 0.320 3.680 12 O -0.439 6.439 13 C 0.007 3.993 14 H 0.081 0.919 15 C -0.543 4.543 16 H 0.102 0.898 17 C -0.122 4.122 18 N -0.517 5.517 19 Si 0.692 3.308 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.027 4.027 24 C -0.090 4.090 25 C -0.148 4.148 26 C -0.161 4.161 27 C -0.148 4.148 28 C -0.152 4.152 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.233 0.767 46 H 0.079 0.921 47 H 0.136 0.864 48 H 0.129 0.871 49 H 0.127 0.873 50 H 0.127 0.873 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.934 -8.062 -13.699 15.922 hybrid contribution 1.588 1.298 -0.944 2.258 sum 0.654 -6.764 -14.643 16.143 Atomic orbital electron populations 1.21740 0.93307 1.01983 1.01409 1.21745 0.96130 0.92724 0.88890 1.22414 1.01388 0.96140 1.02568 1.22885 1.01169 0.95708 0.97393 1.22686 1.01510 0.96783 0.95727 1.23114 0.95501 0.94672 0.95559 1.63499 1.35870 1.08674 1.16007 1.22548 0.96768 0.96369 0.93329 1.21097 0.96253 0.92719 0.89768 1.45814 1.57059 1.16297 1.19238 1.21436 0.78898 0.87432 0.80228 1.90584 1.59448 1.20484 1.73391 1.18413 0.95834 0.93861 0.91214 0.91903 1.20575 1.08345 0.88198 1.37172 0.89827 1.25051 0.96288 0.96198 0.94711 1.69855 1.35973 1.00644 1.45233 0.87009 0.85015 0.78603 0.80135 1.19714 1.20876 1.18513 1.19933 0.92540 0.93735 0.96463 1.20887 1.00039 0.95161 0.92899 1.21041 0.94920 1.00199 0.98658 1.20867 0.93893 1.01997 0.99333 1.20879 0.98706 0.99588 0.95667 1.20990 0.94924 1.00409 0.98885 0.92174 0.92797 0.92327 0.92191 0.92197 0.91415 0.90782 0.91477 0.90670 0.91015 0.93459 0.89944 0.89510 0.94025 0.92484 0.91239 0.76691 0.92084 0.86363 0.87105 0.87343 0.87283 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.71 37.16 0.32 -0.88 16 2 C 0.09 0.94 1.15 -130.62 -0.15 0.79 16 3 C -0.17 -1.62 7.15 37.16 0.27 -1.36 16 4 C -0.13 -1.13 6.01 -24.91 -0.15 -1.28 16 5 C -0.13 -1.10 7.08 -24.59 -0.17 -1.28 16 6 C 0.04 0.42 5.56 -2.30 -0.01 0.40 16 7 N -0.52 -6.08 4.82 -215.75 -1.04 -7.12 16 8 C 0.04 0.49 3.78 -3.82 -0.01 0.48 16 9 C 0.13 2.02 5.65 -4.04 -0.02 2.00 16 10 N -0.73 -13.62 5.56 -60.29 -0.33 -13.96 16 11 C 0.53 11.78 6.99 -10.99 -0.08 11.70 16 12 O -0.56 -13.65 15.33 5.56 0.09 -13.56 16 13 C 0.03 0.65 2.22 -94.07 -0.21 0.44 16 14 H 0.06 1.39 4.50 -51.93 -0.23 1.15 16 15 C -0.51 -13.12 8.25 -34.44 -0.28 -13.40 16 16 H 0.08 2.42 7.68 -52.49 -0.40 2.02 16 17 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 18 N -0.88 -24.76 13.96 55.43 0.77 -23.98 16 19 Si 0.87 19.27 26.98 -169.99 -4.59 14.68 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.26 -5.63 6.73 56.52 0.38 -5.25 16 23 C -0.03 -0.58 4.39 -104.62 -0.46 -1.04 16 24 C -0.07 -1.58 8.18 -39.58 -0.32 -1.91 16 25 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.14 -2.49 10.05 -39.59 -0.40 -2.89 16 27 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 28 C -0.13 -2.72 9.67 -39.58 -0.38 -3.10 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.60 6.48 -51.93 -0.34 0.26 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.71 6.82 -51.93 -0.35 0.35 16 35 H 0.07 0.55 7.83 -51.92 -0.41 0.14 16 36 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.51 7.70 -51.93 -0.40 0.11 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.15 6.50 -51.93 -0.34 0.81 16 42 H 0.04 0.51 6.54 -51.93 -0.34 0.17 16 43 H 0.06 0.92 7.34 -51.93 -0.38 0.54 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.40 7.01 8.47 -40.82 -0.35 6.67 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.12 2.73 7.55 -52.49 -0.40 2.33 16 48 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 49 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 50 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 51 H 0.11 2.04 7.96 -52.49 -0.42 1.62 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -29.85 398.85 -10.62 -40.47 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -8.57 Total: 12.33 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -2.96 Total: -14.86 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.60 Total: -45.06 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.59 Total: 14.68 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.85 -10.62 -40.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363286240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.003 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds