Wall clock time and date at job start Tue Mar 31 2020 15:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 110.01129 * 2 1 4 4 C 1.54313 * 109.88834 * 238.88707 * 2 1 3 5 5 C 1.55150 * 103.01834 * 262.87844 * 4 2 1 6 6 C 1.54903 * 101.64795 * 324.34698 * 5 4 2 7 7 N 1.47438 * 109.88424 * 121.11534 * 2 1 3 8 8 C 1.46898 * 110.99955 * 242.66271 * 7 2 1 9 9 C 1.53001 * 109.47273 * 174.38395 * 8 7 2 10 10 N 1.46502 * 109.47347 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00287 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99897 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00341 * 179.97438 * 11 10 9 14 14 H 1.08998 * 109.47460 * 310.32847 * 13 11 10 15 15 C 1.50703 * 109.46756 * 70.32291 * 13 11 10 16 16 H 1.07997 * 119.99982 * 55.09769 * 15 13 11 17 17 C 1.37878 * 119.99965 * 234.81958 * 15 13 11 18 18 N 1.31516 * 120.00046 * 176.97672 * 17 15 13 19 19 Si 1.86799 * 119.99944 * 356.98036 * 17 15 13 20 20 H 1.48493 * 109.47454 * 84.56467 * 19 17 15 21 21 H 1.48504 * 109.47181 * 204.56714 * 19 17 15 22 22 H 1.48502 * 109.47168 * 324.56050 * 19 17 15 23 23 C 1.50700 * 109.47380 * 190.32062 * 13 11 10 24 24 C 1.38232 * 119.99892 * 292.30865 * 23 13 11 25 25 C 1.38241 * 119.99567 * 179.80988 * 24 23 13 26 26 C 1.38228 * 120.00198 * 0.39416 * 25 24 23 27 27 C 1.38236 * 120.00074 * 359.85784 * 26 25 24 28 28 C 1.38235 * 120.00168 * 359.95781 * 27 26 25 29 29 H 1.09000 * 109.47364 * 298.88531 * 1 2 3 30 30 H 1.09005 * 109.46632 * 58.88675 * 1 2 3 31 31 H 1.08993 * 109.47206 * 178.88014 * 1 2 3 32 32 H 1.08996 * 109.47246 * 174.72472 * 3 2 1 33 33 H 1.09000 * 109.47174 * 294.72433 * 3 2 1 34 34 H 1.09000 * 109.46965 * 54.72413 * 3 2 1 35 35 H 1.09007 * 110.71032 * 21.25782 * 4 2 1 36 36 H 1.09004 * 110.70823 * 144.32507 * 4 2 1 37 37 H 1.08994 * 110.99025 * 82.43628 * 5 4 2 38 38 H 1.08997 * 110.99108 * 206.25911 * 5 4 2 39 39 H 1.08999 * 110.37746 * 278.23321 * 6 5 4 40 40 H 1.09004 * 110.37136 * 155.89880 * 6 5 4 41 41 H 1.08997 * 109.47484 * 54.38096 * 8 7 2 42 42 H 1.09007 * 109.47321 * 294.38312 * 8 7 2 43 43 H 1.09001 * 109.47223 * 60.00215 * 9 8 7 44 44 H 1.09000 * 109.46867 * 299.99759 * 9 8 7 45 45 H 0.97004 * 120.00013 * 359.97438 * 10 9 8 46 46 H 0.96997 * 119.99747 * 180.02562 * 18 17 15 47 47 H 1.07994 * 120.00355 * 359.97438 * 24 23 13 48 48 H 1.08003 * 119.99634 * 180.23250 * 25 24 23 49 49 H 1.08007 * 120.00312 * 179.83342 * 26 25 24 50 50 H 1.08001 * 120.00334 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00618 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7498 -1.2424 5 6 2.3501 -2.1709 -0.6941 6 6 2.8585 -1.8555 0.7348 7 7 2.0315 -0.7165 1.1870 8 6 2.8028 0.1814 2.0570 9 6 3.1863 -0.5575 3.3407 10 7 3.9550 0.3381 4.2086 11 6 4.4020 -0.0998 5.4022 12 8 4.1674 -1.2353 5.7581 13 6 5.1932 0.8213 6.2948 14 1 5.9947 1.2847 5.7196 15 6 4.2851 1.8916 6.8433 16 1 3.3865 1.6167 7.3755 17 6 4.6044 3.2217 6.6706 18 7 3.7827 4.1559 7.0968 19 14 6.2042 3.6968 5.8313 20 1 6.0119 3.6894 4.3589 21 1 6.6090 5.0563 6.2708 22 1 7.2635 2.7225 6.1972 23 6 5.7842 0.0315 7.4341 24 6 4.9577 -0.5160 8.3975 25 6 5.4996 -1.2437 9.4404 26 6 6.8684 -1.4170 9.5245 27 6 7.6953 -0.8650 8.5640 28 6 7.1532 -0.1405 7.5189 29 1 -0.3634 0.4964 0.8998 30 1 -0.3633 0.5311 -0.8799 31 1 -0.3633 -1.0274 -0.0201 32 1 3.1394 1.4289 0.0945 33 1 1.7741 1.9261 -0.9335 34 1 1.6203 1.9821 0.8390 35 1 1.2926 -0.7877 -2.0205 36 1 2.9650 -0.2824 -1.6187 37 1 1.4422 -2.7731 -0.6614 38 1 3.1230 -2.6641 -1.2835 39 1 3.9112 -1.5738 0.7095 40 1 2.7105 -2.7150 1.3885 41 1 2.1984 1.0534 2.3065 42 1 3.7065 0.5020 1.5385 43 1 3.7909 -1.4295 3.0912 44 1 2.2827 -0.8780 3.8592 45 1 4.1423 1.2464 3.9242 46 1 4.0072 5.0917 6.9750 47 1 3.8886 -0.3775 8.3339 48 1 4.8536 -1.6747 10.1910 49 1 7.2920 -1.9833 10.3408 50 1 8.7648 -1.0000 8.6298 51 1 7.7992 0.2911 6.7687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363286240.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:36 Heat of formation + Delta-G solvation = -31.890314 kcal Electronic energy + Delta-G solvation = -28683.944727 eV Core-core repulsion = 24967.823182 eV Total energy + Delta-G solvation = -3716.121545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.15275 -40.70797 -39.40429 -36.17463 -35.52108 -33.51398 -33.34197 -33.10115 -31.62893 -29.83850 -28.56133 -28.12041 -26.15196 -25.46632 -23.76375 -23.36192 -22.55517 -21.79268 -21.02432 -19.59835 -19.14409 -17.95163 -17.72910 -17.18054 -16.70146 -16.58626 -16.32385 -16.15627 -15.80596 -15.43676 -15.24585 -14.84291 -14.68817 -14.48504 -14.33494 -14.15161 -14.11008 -13.78492 -13.74012 -13.41431 -13.14205 -13.04144 -12.87593 -12.77625 -12.60866 -12.36288 -12.24992 -12.06314 -12.02969 -11.92404 -11.80795 -11.68732 -11.50928 -11.43677 -11.39760 -10.90904 -10.60235 -9.98121 -9.64299 -9.37838 -9.30288 -8.35297 -6.44513 0.64062 0.70420 1.31974 1.38794 1.47022 1.86062 2.28751 2.29090 2.95153 3.07544 3.18816 3.60312 3.70160 3.88323 4.00817 4.04095 4.09000 4.21995 4.26292 4.28236 4.31009 4.38145 4.40293 4.45011 4.47424 4.49168 4.61418 4.70473 4.78076 4.82394 4.85083 4.88666 4.92591 4.95471 4.97849 5.04433 5.08120 5.17482 5.19649 5.21467 5.31203 5.32350 5.38407 5.48875 5.58044 5.69850 5.74310 5.94597 6.06511 6.11519 6.20039 6.31188 6.58158 6.66470 7.19597 7.43671 8.80061 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003270 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.251068 B = 8561.475742 C = 9832.158853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.089 3.911 3 C -0.166 4.166 4 C -0.127 4.127 5 C -0.123 4.123 6 C 0.034 3.966 7 N -0.531 5.531 8 C 0.052 3.948 9 C 0.131 3.869 10 N -0.722 5.722 11 C 0.527 3.473 12 O -0.588 6.588 13 C 0.032 3.968 14 H 0.076 0.924 15 C -0.505 4.505 16 H 0.031 0.969 17 C 0.033 3.967 18 N -0.931 5.931 19 Si 0.926 3.074 20 H -0.242 1.242 21 H -0.286 1.286 22 H -0.246 1.246 23 C -0.059 4.059 24 C -0.104 4.104 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.148 4.148 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.406 0.594 46 H 0.272 0.728 47 H 0.085 0.915 48 H 0.133 0.867 49 H 0.151 0.849 50 H 0.151 0.849 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.527 -7.998 -16.094 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.000 4.000 3 C -0.223 4.223 4 C -0.166 4.166 5 C -0.160 4.160 6 C -0.093 4.093 7 N -0.256 5.256 8 C -0.076 4.076 9 C 0.007 3.993 10 N -0.373 5.373 11 C 0.315 3.685 12 O -0.469 6.469 13 C 0.011 3.989 14 H 0.094 0.906 15 C -0.542 4.542 16 H 0.049 0.951 17 C -0.167 4.167 18 N -0.569 5.569 19 Si 0.749 3.251 20 H -0.166 1.166 21 H -0.212 1.212 22 H -0.169 1.169 23 C -0.060 4.060 24 C -0.123 4.123 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.166 4.166 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.241 0.759 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.151 0.849 49 H 0.169 0.831 50 H 0.168 0.832 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.872 -8.782 -15.555 17.960 hybrid contribution 0.622 1.422 -0.276 1.577 sum 2.493 -7.360 -15.831 17.635 Atomic orbital electron populations 1.21731 0.93096 1.01913 1.01472 1.21877 0.96303 0.92964 0.88875 1.22390 1.01095 0.95921 1.02930 1.22866 1.01804 0.95084 0.96797 1.22669 1.01973 0.97130 0.94270 1.23156 0.95400 0.93890 0.96895 1.63467 1.35957 1.09025 1.17117 1.22355 0.97359 0.95839 0.92097 1.21137 0.94831 0.92807 0.90484 1.45762 1.56190 1.16844 1.18507 1.21369 0.78982 0.87039 0.81072 1.90554 1.60532 1.21592 1.74198 1.18334 0.95506 0.93249 0.91832 0.90590 1.20470 1.07347 0.89639 1.36757 0.95080 1.25861 0.99935 0.95653 0.95274 1.70006 1.38398 1.01150 1.47303 0.86029 0.80373 0.78104 0.80633 1.16576 1.21164 1.16935 1.20012 0.94031 0.95358 0.96555 1.20833 0.98671 0.97690 0.95074 1.21348 0.96599 0.99318 0.98016 1.21360 0.92844 1.00999 1.00050 1.21373 1.00910 0.97607 0.94220 1.21264 0.93856 1.01094 1.00343 0.93847 0.90924 0.92524 0.92387 0.90556 0.92682 0.89241 0.90915 0.90542 0.89424 0.93551 0.91000 0.90077 0.92757 0.92310 0.93577 0.75924 0.91902 0.89694 0.84923 0.83110 0.83152 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.71 71.98 0.63 -1.61 16 2 C 0.09 1.65 1.15 3.87 0.00 1.65 16 3 C -0.17 -2.98 7.15 71.98 0.51 -2.46 16 4 C -0.13 -1.83 6.01 31.78 0.19 -1.64 16 5 C -0.12 -1.85 7.08 31.98 0.23 -1.63 16 6 C 0.03 0.70 5.56 86.77 0.48 1.18 16 7 N -0.53 -12.32 4.82 -836.52 -4.03 -16.35 16 8 C 0.05 1.34 3.78 86.30 0.33 1.67 16 9 C 0.13 4.34 5.65 86.38 0.49 4.83 16 10 N -0.72 -27.56 5.56 -463.06 -2.57 -30.14 16 11 C 0.53 24.24 6.99 87.66 0.61 24.85 16 12 O -0.59 -29.96 15.33 -3.04 -0.05 -30.01 16 13 C 0.03 1.52 2.22 -13.03 -0.03 1.49 16 14 H 0.08 3.29 4.50 -2.39 -0.01 3.28 16 15 C -0.50 -27.62 8.25 25.60 0.21 -27.41 16 16 H 0.03 1.97 7.68 -2.91 -0.02 1.95 16 17 C 0.03 1.77 5.47 84.65 0.46 2.23 16 18 N -0.93 -54.43 13.96 21.45 0.30 -54.13 16 19 Si 0.93 39.11 26.98 68.60 1.85 40.97 16 20 H -0.24 -9.05 7.11 99.48 0.71 -8.34 16 21 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.25 -9.73 6.73 99.48 0.67 -9.06 16 23 C -0.06 -2.69 4.39 -19.87 -0.09 -2.78 16 24 C -0.10 -4.81 8.18 22.27 0.18 -4.63 16 25 C -0.13 -5.04 10.05 22.27 0.22 -4.82 16 26 C -0.13 -4.26 10.05 22.27 0.22 -4.04 16 27 C -0.12 -3.97 10.05 22.27 0.22 -3.74 16 28 C -0.15 -5.71 9.67 22.27 0.22 -5.50 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 1.06 6.48 -2.39 -0.02 1.04 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.12 6.82 -2.39 -0.02 1.10 16 35 H 0.09 1.04 7.83 -2.38 -0.02 1.02 16 36 H 0.07 0.99 7.85 -2.38 -0.02 0.97 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.05 0.96 7.70 -2.39 -0.02 0.94 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 2.19 6.50 -2.39 -0.02 2.17 16 42 H 0.05 1.27 6.54 -2.38 -0.02 1.26 16 43 H 0.06 1.93 7.34 -2.39 -0.02 1.92 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.41 14.33 8.47 -92.71 -0.79 13.54 16 46 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 47 H 0.08 4.33 7.55 -2.91 -0.02 4.31 16 48 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 49 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 50 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 51 H 0.12 4.32 7.96 -2.91 -0.02 4.29 16 Total: -1.00 -69.05 398.85 0.68 -68.37 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: 0.09 Total: 43.62 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.10 Total: -22.33 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -6.31 Total: -100.62 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.05 Total: -30.01 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.85 Total: 40.97 kcal Total: -69.05 0.68 -68.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363286240.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.476 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds