Wall clock time and date at job start Tue Mar 31 2020 15:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.01144 * 2 1 4 4 C 1.54322 * 109.88876 * 238.88529 * 2 1 3 5 5 C 1.55147 * 103.01911 * 262.87962 * 4 2 1 6 6 C 1.54908 * 101.64793 * 324.34414 * 5 4 2 7 7 N 1.47436 * 109.88846 * 121.11513 * 2 1 3 8 8 C 1.46895 * 111.00089 * 242.66216 * 7 2 1 9 9 C 1.53001 * 109.47678 * 172.07242 * 8 7 2 10 10 N 1.46495 * 109.47626 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00081 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00104 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99822 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47518 * 59.99878 * 13 11 10 15 15 C 1.50702 * 109.47433 * 299.99896 * 13 11 10 16 16 H 1.07996 * 119.99936 * 125.10979 * 15 13 11 17 17 C 1.37881 * 119.99730 * 305.11069 * 15 13 11 18 18 N 1.31517 * 119.99780 * 7.28891 * 17 15 13 19 19 Si 1.86795 * 119.99995 * 187.28713 * 17 15 13 20 20 H 1.48501 * 109.46935 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47188 * 119.99796 * 19 17 15 22 22 H 1.48496 * 109.47337 * 240.00118 * 19 17 15 23 23 C 1.50696 * 109.47165 * 179.97438 * 13 11 10 24 24 C 1.38239 * 120.00133 * 116.20670 * 23 13 11 25 25 C 1.38233 * 119.99818 * 180.02562 * 24 23 13 26 26 C 1.38231 * 120.00669 * 359.95595 * 25 24 23 27 27 C 1.38240 * 119.99403 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00422 * 0.06995 * 27 26 25 29 29 H 1.08992 * 109.47171 * 298.88397 * 1 2 3 30 30 H 1.09001 * 109.47217 * 58.88337 * 1 2 3 31 31 H 1.09006 * 109.47046 * 178.88605 * 1 2 3 32 32 H 1.08999 * 109.47349 * 177.65076 * 3 2 1 33 33 H 1.09010 * 109.46699 * 297.65052 * 3 2 1 34 34 H 1.08997 * 109.47243 * 57.64319 * 3 2 1 35 35 H 1.09003 * 110.70406 * 21.25800 * 4 2 1 36 36 H 1.09000 * 110.70677 * 144.31949 * 4 2 1 37 37 H 1.08997 * 110.99159 * 82.43553 * 5 4 2 38 38 H 1.09000 * 110.99031 * 206.25682 * 5 4 2 39 39 H 1.09002 * 110.37970 * 278.23888 * 6 5 4 40 40 H 1.09001 * 110.37230 * 155.89981 * 6 5 4 41 41 H 1.08999 * 109.47250 * 52.07368 * 8 7 2 42 42 H 1.09001 * 109.47584 * 292.07396 * 8 7 2 43 43 H 1.09008 * 109.46857 * 59.99810 * 9 8 7 44 44 H 1.08999 * 109.47130 * 300.01026 * 9 8 7 45 45 H 0.97004 * 119.99808 * 0.02562 * 10 9 8 46 46 H 0.96998 * 119.99472 * 179.97438 * 18 17 15 47 47 H 1.07999 * 119.99603 * 359.97438 * 24 23 13 48 48 H 1.08009 * 119.99599 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00537 * 179.72574 * 26 25 24 50 50 H 1.07999 * 119.99493 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7499 -1.2424 5 6 2.3501 -2.1709 -0.6941 6 6 2.8586 -1.8555 0.7347 7 7 2.0316 -0.7164 1.1870 8 6 2.8029 0.1814 2.0569 9 6 3.1372 -0.5385 3.3649 10 7 3.9069 0.3567 4.2322 11 6 4.3151 -0.0664 5.4450 12 8 4.0447 -1.1882 5.8186 13 6 5.1064 0.8547 6.3374 14 1 4.5171 1.7457 6.5539 15 6 6.3828 1.2534 5.6424 16 1 6.6227 2.2982 5.5116 17 6 7.2442 0.2842 5.1735 18 7 6.8885 -0.9816 5.2029 19 14 8.9163 0.7691 4.4967 20 1 9.0727 2.2439 4.5736 21 1 9.9828 0.1153 5.2970 22 1 9.0225 0.3338 3.0810 23 6 5.4357 0.1455 7.6256 24 6 6.7532 -0.1130 7.9551 25 6 7.0552 -0.7640 9.1365 26 6 6.0400 -1.1557 9.9891 27 6 4.7227 -0.8958 9.6603 28 6 4.4205 -0.2457 8.4784 29 1 -0.3633 0.4964 0.8998 30 1 -0.3634 0.5311 -0.8798 31 1 -0.3633 -1.0275 -0.0200 32 1 3.1427 1.4277 0.0421 33 1 1.7297 1.9422 -0.9104 34 1 1.6611 1.9672 0.8681 35 1 1.2925 -0.7877 -2.0205 36 1 2.9649 -0.2825 -1.6188 37 1 1.4422 -2.7732 -0.6614 38 1 3.1230 -2.6642 -1.2836 39 1 3.9112 -1.5738 0.7095 40 1 2.7106 -2.7150 1.3885 41 1 2.2137 1.0726 2.2731 42 1 3.7263 0.4695 1.5545 43 1 3.7264 -1.4298 3.1487 44 1 2.2138 -0.8266 3.8673 45 1 4.1228 1.2540 3.9336 46 1 7.4943 -1.6633 4.8727 47 1 7.5463 0.1929 7.2890 48 1 8.0845 -0.9663 9.3937 49 1 6.2757 -1.6682 10.9100 50 1 3.9295 -1.2022 10.3261 51 1 3.3913 -0.0431 8.2214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363286245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:40 Heat of formation + Delta-G solvation = -5.471148 kcal Electronic energy + Delta-G solvation = -29142.634392 eV Core-core repulsion = 25427.658469 eV Total energy + Delta-G solvation = -3714.975924 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.95459 -38.81457 -37.38770 -34.40906 -33.64185 -32.48690 -31.81082 -30.85323 -29.64317 -27.99244 -27.52304 -26.49007 -25.23981 -23.90849 -22.42717 -21.24798 -20.99120 -20.33725 -19.25605 -18.53759 -16.84884 -16.14416 -15.88960 -15.61634 -15.27885 -15.05879 -14.73307 -14.53250 -14.08672 -13.85480 -13.67276 -13.60219 -13.26438 -12.96643 -12.90212 -12.43910 -12.36015 -12.25577 -12.18557 -11.99031 -11.72399 -11.63479 -11.48155 -11.28654 -11.04352 -11.02872 -10.94525 -10.77213 -10.70894 -10.68785 -10.47496 -10.35027 -10.04826 -9.70371 -9.36624 -8.64528 -8.28105 -8.22456 -7.84387 -7.75075 -7.39061 -6.17350 -4.30482 2.51163 2.60249 3.16112 3.27233 3.29040 3.74815 4.20281 4.35120 4.44634 4.58631 4.67098 4.82364 5.05449 5.08901 5.09658 5.14746 5.24052 5.34354 5.40369 5.46722 5.57709 5.62703 5.68726 5.70925 5.79077 5.84257 5.87834 5.92091 5.94725 6.00434 6.04301 6.05390 6.12403 6.28049 6.34342 6.43088 6.45106 6.62930 6.66730 6.84350 6.93859 7.06289 7.10386 7.14708 7.23047 7.51457 7.61794 7.68543 7.70612 7.81789 8.15402 8.27576 8.65799 8.89373 9.34022 9.84347 10.83791 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003301 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.110324 B = 8480.522378 C = 9509.858029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 C -0.165 4.165 4 C -0.133 4.133 5 C -0.129 4.129 6 C 0.040 3.960 7 N -0.517 5.517 8 C 0.041 3.959 9 C 0.134 3.866 10 N -0.736 5.736 11 C 0.558 3.442 12 O -0.549 6.549 13 C 0.054 3.946 14 H 0.055 0.945 15 C -0.538 4.538 16 H 0.067 0.933 17 C 0.073 3.927 18 N -0.843 5.843 19 Si 0.882 3.118 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.284 1.284 23 C -0.016 4.016 24 C -0.063 4.063 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.112 4.112 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.392 0.608 46 H 0.265 0.735 47 H 0.135 0.865 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.102 0.898 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 2.783 -9.340 12.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.004 3.996 3 C -0.223 4.223 4 C -0.171 4.171 5 C -0.167 4.167 6 C -0.087 4.087 7 N -0.241 5.241 8 C -0.088 4.088 9 C 0.009 3.991 10 N -0.390 5.390 11 C 0.347 3.653 12 O -0.426 6.426 13 C 0.033 3.967 14 H 0.073 0.927 15 C -0.576 4.576 16 H 0.086 0.914 17 C -0.135 4.135 18 N -0.476 5.476 19 Si 0.709 3.291 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.210 1.210 23 C -0.017 4.017 24 C -0.081 4.081 25 C -0.166 4.166 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.225 0.775 46 H 0.075 0.925 47 H 0.153 0.847 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.918 1.556 -8.803 12.627 hybrid contribution 1.920 0.609 -1.126 2.308 sum -6.998 2.165 -9.929 12.339 Atomic orbital electron populations 1.21728 0.93493 1.01933 1.01159 1.21740 0.95962 0.92731 0.89158 1.22402 1.01446 0.96172 1.02287 1.22881 1.01099 0.95826 0.97339 1.22689 1.01426 0.96690 0.95915 1.23102 0.95678 0.94627 0.95305 1.63490 1.36133 1.08710 1.15805 1.22536 0.96401 0.96085 0.93733 1.20915 0.95647 0.93425 0.89134 1.45673 1.58125 1.17052 1.18109 1.20792 0.75560 0.88023 0.80950 1.90529 1.56365 1.21007 1.74658 1.17920 0.96014 0.92917 0.89863 0.92677 1.20784 1.03662 0.93341 1.39785 0.91431 1.25046 0.98362 0.95058 0.94985 1.70083 1.35328 0.99552 1.42617 0.86683 0.84531 0.79058 0.78812 1.19389 1.20574 1.21035 1.19851 0.92592 0.95157 0.94132 1.21415 0.97857 0.94771 0.94037 1.21060 0.97867 1.01592 0.96097 1.20793 0.93368 1.02593 0.99481 1.20791 0.95761 1.01819 0.97689 1.20885 0.98395 0.99428 0.94354 0.92363 0.92908 0.92355 0.92163 0.92352 0.91572 0.90915 0.91481 0.90778 0.91043 0.93261 0.89962 0.90168 0.94029 0.92681 0.92340 0.77493 0.92458 0.84724 0.87995 0.88086 0.87955 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.71 37.16 0.32 -0.89 16 2 C 0.09 1.00 1.15 -130.62 -0.15 0.85 16 3 C -0.17 -1.65 7.15 37.16 0.27 -1.38 16 4 C -0.13 -1.27 6.01 -24.90 -0.15 -1.42 16 5 C -0.13 -1.31 7.08 -24.59 -0.17 -1.48 16 6 C 0.04 0.52 5.68 -2.30 -0.01 0.51 16 7 N -0.52 -6.72 4.81 -215.75 -1.04 -7.76 16 8 C 0.04 0.57 3.79 -3.83 -0.01 0.56 16 9 C 0.13 2.43 5.69 -4.04 -0.02 2.40 16 10 N -0.74 -14.83 5.46 -60.30 -0.33 -15.16 16 11 C 0.56 13.45 5.35 -10.99 -0.06 13.39 16 12 O -0.55 -15.16 15.10 5.56 0.08 -15.08 16 13 C 0.05 1.29 2.68 -94.08 -0.25 1.04 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 15 C -0.54 -13.10 7.60 -34.44 -0.26 -13.36 16 16 H 0.07 1.60 7.82 -52.49 -0.41 1.19 16 17 C 0.07 1.81 3.16 -17.82 -0.06 1.76 16 18 N -0.84 -22.78 10.55 55.43 0.58 -22.19 16 19 Si 0.88 19.57 29.49 -169.99 -5.01 14.55 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.02 -0.40 4.53 -104.62 -0.47 -0.87 16 24 C -0.06 -1.52 8.06 -39.58 -0.32 -1.83 16 25 C -0.15 -3.17 10.05 -39.59 -0.40 -3.57 16 26 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 27 C -0.14 -2.90 10.05 -39.58 -0.40 -3.30 16 28 C -0.11 -2.52 8.66 -39.58 -0.34 -2.87 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.65 6.73 -51.93 -0.35 0.30 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.66 6.59 -51.93 -0.34 0.32 16 35 H 0.07 0.60 7.83 -51.93 -0.41 0.19 16 36 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.04 6.27 -51.93 -0.33 0.72 16 42 H 0.04 0.60 6.69 -51.93 -0.35 0.26 16 43 H 0.05 1.14 7.42 -51.92 -0.39 0.75 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.39 7.12 8.36 -40.82 -0.34 6.78 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.14 3.39 4.98 -52.49 -0.26 3.13 16 48 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 49 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 50 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 51 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -29.62 394.18 -11.27 -40.89 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.61 Total: 12.56 kcal Atomic # 6 Polarization: -10.86 SS G_CDS: -2.89 Total: -13.75 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.78 Total: -45.11 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.08 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.01 Total: 14.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.62 -11.27 -40.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363286245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.422 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds