Wall clock time and date at job start Tue Mar 31 2020 15:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 110.01144 * 2 1 4 4 C 1.54322 * 109.88876 * 238.88529 * 2 1 3 5 5 C 1.55147 * 103.01911 * 262.87962 * 4 2 1 6 6 C 1.54908 * 101.64793 * 324.34414 * 5 4 2 7 7 N 1.47436 * 109.88846 * 121.11513 * 2 1 3 8 8 C 1.46895 * 111.00089 * 242.66216 * 7 2 1 9 9 C 1.53001 * 109.47678 * 172.07242 * 8 7 2 10 10 N 1.46495 * 109.47626 * 179.97438 * 9 8 7 11 11 C 1.34780 * 120.00081 * 180.02562 * 10 9 8 12 12 O 1.21282 * 120.00104 * 359.97438 * 11 10 9 13 13 C 1.50695 * 119.99822 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.47518 * 59.99878 * 13 11 10 15 15 C 1.50702 * 109.47433 * 299.99896 * 13 11 10 16 16 H 1.07996 * 119.99936 * 125.10979 * 15 13 11 17 17 C 1.37881 * 119.99730 * 305.11069 * 15 13 11 18 18 N 1.31517 * 119.99780 * 7.28891 * 17 15 13 19 19 Si 1.86795 * 119.99995 * 187.28713 * 17 15 13 20 20 H 1.48501 * 109.46935 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47188 * 119.99796 * 19 17 15 22 22 H 1.48496 * 109.47337 * 240.00118 * 19 17 15 23 23 C 1.50696 * 109.47165 * 179.97438 * 13 11 10 24 24 C 1.38239 * 120.00133 * 116.20670 * 23 13 11 25 25 C 1.38233 * 119.99818 * 180.02562 * 24 23 13 26 26 C 1.38231 * 120.00669 * 359.95595 * 25 24 23 27 27 C 1.38240 * 119.99403 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00422 * 0.06995 * 27 26 25 29 29 H 1.08992 * 109.47171 * 298.88397 * 1 2 3 30 30 H 1.09001 * 109.47217 * 58.88337 * 1 2 3 31 31 H 1.09006 * 109.47046 * 178.88605 * 1 2 3 32 32 H 1.08999 * 109.47349 * 177.65076 * 3 2 1 33 33 H 1.09010 * 109.46699 * 297.65052 * 3 2 1 34 34 H 1.08997 * 109.47243 * 57.64319 * 3 2 1 35 35 H 1.09003 * 110.70406 * 21.25800 * 4 2 1 36 36 H 1.09000 * 110.70677 * 144.31949 * 4 2 1 37 37 H 1.08997 * 110.99159 * 82.43553 * 5 4 2 38 38 H 1.09000 * 110.99031 * 206.25682 * 5 4 2 39 39 H 1.09002 * 110.37970 * 278.23888 * 6 5 4 40 40 H 1.09001 * 110.37230 * 155.89981 * 6 5 4 41 41 H 1.08999 * 109.47250 * 52.07368 * 8 7 2 42 42 H 1.09001 * 109.47584 * 292.07396 * 8 7 2 43 43 H 1.09008 * 109.46857 * 59.99810 * 9 8 7 44 44 H 1.08999 * 109.47130 * 300.01026 * 9 8 7 45 45 H 0.97004 * 119.99808 * 0.02562 * 10 9 8 46 46 H 0.96998 * 119.99472 * 179.97438 * 18 17 15 47 47 H 1.07999 * 119.99603 * 359.97438 * 24 23 13 48 48 H 1.08009 * 119.99599 * 179.97438 * 25 24 23 49 49 H 1.07998 * 120.00537 * 179.72574 * 26 25 24 50 50 H 1.07999 * 119.99493 * 179.97438 * 27 26 25 51 51 H 1.07995 * 120.00024 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 6 2.0550 -0.7499 -1.2424 5 6 2.3501 -2.1709 -0.6941 6 6 2.8586 -1.8555 0.7347 7 7 2.0316 -0.7164 1.1870 8 6 2.8029 0.1814 2.0569 9 6 3.1372 -0.5385 3.3649 10 7 3.9069 0.3567 4.2322 11 6 4.3151 -0.0664 5.4450 12 8 4.0447 -1.1882 5.8186 13 6 5.1064 0.8547 6.3374 14 1 4.5171 1.7457 6.5539 15 6 6.3828 1.2534 5.6424 16 1 6.6227 2.2982 5.5116 17 6 7.2442 0.2842 5.1735 18 7 6.8885 -0.9816 5.2029 19 14 8.9163 0.7691 4.4967 20 1 9.0727 2.2439 4.5736 21 1 9.9828 0.1153 5.2970 22 1 9.0225 0.3338 3.0810 23 6 5.4357 0.1455 7.6256 24 6 6.7532 -0.1130 7.9551 25 6 7.0552 -0.7640 9.1365 26 6 6.0400 -1.1557 9.9891 27 6 4.7227 -0.8958 9.6603 28 6 4.4205 -0.2457 8.4784 29 1 -0.3633 0.4964 0.8998 30 1 -0.3634 0.5311 -0.8798 31 1 -0.3633 -1.0275 -0.0200 32 1 3.1427 1.4277 0.0421 33 1 1.7297 1.9422 -0.9104 34 1 1.6611 1.9672 0.8681 35 1 1.2925 -0.7877 -2.0205 36 1 2.9649 -0.2825 -1.6188 37 1 1.4422 -2.7732 -0.6614 38 1 3.1230 -2.6642 -1.2836 39 1 3.9112 -1.5738 0.7095 40 1 2.7106 -2.7150 1.3885 41 1 2.2137 1.0726 2.2731 42 1 3.7263 0.4695 1.5545 43 1 3.7264 -1.4298 3.1487 44 1 2.2138 -0.8266 3.8673 45 1 4.1228 1.2540 3.9336 46 1 7.4943 -1.6633 4.8727 47 1 7.5463 0.1929 7.2890 48 1 8.0845 -0.9663 9.3937 49 1 6.2757 -1.6682 10.9100 50 1 3.9295 -1.2022 10.3261 51 1 3.3913 -0.0431 8.2214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363286245.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:39 Heat of formation + Delta-G solvation = -22.703881 kcal Electronic energy + Delta-G solvation = -29143.381660 eV Core-core repulsion = 25427.658469 eV Total energy + Delta-G solvation = -3715.723191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.99468 -40.53198 -39.11387 -35.92867 -35.53988 -33.38264 -33.10785 -32.65161 -31.34281 -29.54563 -28.44019 -27.93195 -26.15258 -25.72264 -23.66529 -22.93377 -22.31805 -21.75394 -20.96780 -19.59851 -18.68043 -17.66268 -17.15955 -16.94526 -16.79793 -16.42770 -16.38139 -16.07002 -15.53343 -15.38563 -15.26275 -14.59030 -14.50441 -14.28459 -14.13782 -14.09502 -13.89438 -13.74064 -13.60971 -13.09738 -13.01161 -12.97577 -12.76824 -12.58321 -12.50056 -12.35444 -12.21806 -12.20054 -11.98107 -11.79820 -11.76096 -11.52449 -11.46164 -11.41045 -11.19194 -10.58782 -10.15999 -9.61940 -9.44970 -9.31566 -9.11985 -8.11546 -6.28503 0.81921 0.91013 1.37438 1.44012 1.52427 2.32623 2.43248 2.62948 3.14497 3.16831 3.36649 3.63746 3.70716 3.92216 4.08698 4.11852 4.24254 4.29519 4.33401 4.34077 4.45033 4.48126 4.49495 4.61821 4.62710 4.72318 4.74832 4.82425 4.90226 4.90831 4.95747 4.98169 4.98654 5.05256 5.09279 5.11672 5.14941 5.19579 5.23223 5.30885 5.41274 5.52119 5.54345 5.68025 5.84837 5.90782 5.94295 5.97674 6.08818 6.15828 6.39765 6.50199 6.76185 7.13297 7.38929 7.99410 8.88717 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003301 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.110324 B = 8480.522378 C = 9509.858029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.087 3.913 3 C -0.163 4.163 4 C -0.128 4.128 5 C -0.122 4.122 6 C 0.036 3.964 7 N -0.527 5.527 8 C 0.058 3.942 9 C 0.143 3.857 10 N -0.726 5.726 11 C 0.556 3.444 12 O -0.590 6.590 13 C 0.046 3.954 14 H 0.068 0.932 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.041 3.959 18 N -0.875 5.875 19 Si 0.937 3.063 20 H -0.258 1.258 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.041 4.041 24 C -0.090 4.090 25 C -0.155 4.155 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.039 0.961 43 H 0.024 0.976 44 H 0.047 0.953 45 H 0.403 0.597 46 H 0.257 0.743 47 H 0.116 0.884 48 H 0.123 0.877 49 H 0.141 0.859 50 H 0.136 0.864 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 3.660 -9.886 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.002 4.002 3 C -0.221 4.221 4 C -0.166 4.166 5 C -0.160 4.160 6 C -0.092 4.092 7 N -0.252 5.252 8 C -0.070 4.070 9 C 0.018 3.982 10 N -0.379 5.379 11 C 0.345 3.655 12 O -0.470 6.470 13 C 0.025 3.975 14 H 0.086 0.914 15 C -0.572 4.572 16 H 0.091 0.909 17 C -0.163 4.163 18 N -0.510 5.510 19 Si 0.763 3.237 20 H -0.182 1.182 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.042 4.042 24 C -0.108 4.108 25 C -0.173 4.173 26 C -0.158 4.158 27 C -0.159 4.159 28 C -0.147 4.147 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.238 0.762 46 H 0.066 0.934 47 H 0.134 0.866 48 H 0.141 0.859 49 H 0.158 0.842 50 H 0.154 0.846 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.476 2.488 -9.378 13.562 hybrid contribution 2.044 0.331 -0.895 2.256 sum -7.432 2.819 -10.274 12.990 Atomic orbital electron populations 1.21710 0.92476 1.01937 1.01816 1.21920 0.96655 0.93072 0.88511 1.22375 1.00721 0.95742 1.03260 1.22881 1.01741 0.94803 0.97197 1.22668 1.01882 0.97536 0.93938 1.23082 0.94908 0.94155 0.97031 1.63477 1.35648 1.08860 1.17173 1.22332 0.96802 0.96115 0.91787 1.20864 0.94055 0.92587 0.90699 1.45569 1.57318 1.17677 1.17292 1.20921 0.75215 0.87464 0.81857 1.90490 1.58133 1.22649 1.75742 1.18033 0.95989 0.93403 0.90119 0.91383 1.20974 1.03851 0.93428 1.38994 0.90928 1.25549 1.00855 0.94739 0.95144 1.70243 1.36045 1.00455 1.44222 0.85823 0.81046 0.79193 0.77622 1.18172 1.21025 1.21504 1.19979 0.93250 0.96364 0.94629 1.21390 0.97400 0.96730 0.95277 1.21363 0.99649 1.00836 0.95438 1.21220 0.92668 1.01538 1.00368 1.21211 0.97180 1.00382 0.97174 1.21047 0.98164 1.00263 0.95273 0.93175 0.90719 0.92752 0.93180 0.90396 0.91731 0.88824 0.91398 0.90130 0.89987 0.94956 0.91685 0.88551 0.94301 0.95784 0.93422 0.76245 0.93403 0.86614 0.85860 0.84169 0.84612 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 8.71 71.98 0.63 -1.47 16 2 C 0.09 1.71 1.15 3.87 0.00 1.72 16 3 C -0.16 -2.93 7.15 71.98 0.51 -2.42 16 4 C -0.13 -2.17 6.01 31.78 0.19 -1.97 16 5 C -0.12 -2.34 7.08 31.98 0.23 -2.12 16 6 C 0.04 0.95 5.68 86.77 0.49 1.44 16 7 N -0.53 -13.63 4.81 -836.51 -4.02 -17.65 16 8 C 0.06 1.65 3.79 86.30 0.33 1.97 16 9 C 0.14 5.40 5.69 86.38 0.49 5.89 16 10 N -0.73 -30.04 5.46 -463.06 -2.53 -32.57 16 11 C 0.56 27.62 5.35 87.65 0.47 28.09 16 12 O -0.59 -33.86 15.10 -3.04 -0.05 -33.90 16 13 C 0.05 2.22 2.68 -13.03 -0.03 2.18 16 14 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 15 C -0.53 -26.31 7.60 25.60 0.19 -26.12 16 16 H 0.07 3.43 7.82 -2.91 -0.02 3.40 16 17 C 0.04 2.07 3.16 84.66 0.27 2.34 16 18 N -0.88 -48.76 10.55 21.45 0.23 -48.53 16 19 Si 0.94 40.63 29.49 68.60 2.02 42.65 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 23 C -0.04 -2.03 4.53 -19.86 -0.09 -2.12 16 24 C -0.09 -4.38 8.06 22.27 0.18 -4.20 16 25 C -0.15 -6.48 10.05 22.27 0.22 -6.26 16 26 C -0.14 -5.24 10.05 22.27 0.22 -5.02 16 27 C -0.14 -5.50 10.05 22.27 0.22 -5.28 16 28 C -0.13 -5.80 8.66 22.27 0.19 -5.61 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 1.00 6.73 -2.39 -0.02 0.99 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.06 1.17 6.59 -2.39 -0.02 1.16 16 35 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 36 H 0.07 1.16 7.85 -2.39 -0.02 1.14 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.03 0.94 7.66 -2.39 -0.02 0.93 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.10 2.43 6.27 -2.39 -0.01 2.41 16 42 H 0.04 1.13 6.69 -2.39 -0.02 1.12 16 43 H 0.02 1.05 7.42 -2.38 -0.02 1.04 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.40 14.76 8.36 -92.71 -0.77 13.98 16 46 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 47 H 0.12 5.97 4.98 -2.91 -0.01 5.96 16 48 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 49 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 50 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 51 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -65.53 394.18 0.52 -65.02 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: 0.13 Total: 43.92 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 4.72 Total: -18.94 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -6.32 Total: -98.74 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.05 Total: -33.90 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.02 Total: 42.65 kcal Total: -65.53 0.52 -65.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363286245.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.312 kcal (2) G-P(sol) polarization free energy of solvation -65.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds