Wall clock time and date at job start Tue Mar 31 2020 16:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 110.27348 * 2 1 4 4 C 1.54596 * 110.30663 * 237.80506 * 2 1 3 5 5 C 1.54941 * 102.91891 * 263.04033 * 4 2 1 6 6 N 1.48526 * 103.22790 * 322.58711 * 5 4 2 7 7 C 1.46905 * 111.00010 * 159.72155 * 6 5 4 8 8 C 1.52991 * 109.46837 * 52.60199 * 7 6 5 9 9 N 1.46503 * 109.46962 * 180.02562 * 8 7 6 10 10 C 1.34779 * 120.00328 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99419 * 359.97438 * 10 9 8 12 12 C 1.50695 * 120.00080 * 180.02562 * 10 9 8 13 13 H 1.09001 * 109.47295 * 299.99387 * 12 10 9 14 14 C 1.50696 * 109.47530 * 59.99483 * 12 10 9 15 15 H 1.07997 * 120.00260 * 235.33651 * 14 12 10 16 16 C 1.37879 * 119.99977 * 55.33425 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.97120 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96775 * 16 14 12 19 19 H 1.48500 * 109.47037 * 60.00267 * 18 16 14 20 20 H 1.48499 * 109.46987 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47204 * 299.99860 * 18 16 14 22 22 C 1.50707 * 109.46942 * 179.97438 * 12 10 9 23 23 C 1.38230 * 120.00383 * 47.22241 * 22 12 10 24 24 C 1.38230 * 120.00043 * 180.02562 * 23 22 12 25 25 C 1.38229 * 120.00376 * 359.95097 * 24 23 22 26 26 C 1.38236 * 119.99772 * 359.97438 * 25 24 23 27 27 C 1.38235 * 120.00185 * 0.06932 * 26 25 24 28 28 C 1.47902 * 105.82421 * 39.20798 * 6 5 4 29 29 H 1.09002 * 109.46870 * 297.91146 * 1 2 3 30 30 H 1.08996 * 109.47076 * 57.91023 * 1 2 3 31 31 H 1.08994 * 109.47052 * 177.91321 * 1 2 3 32 32 H 1.09002 * 109.46739 * 182.09271 * 3 2 1 33 33 H 1.09000 * 109.46621 * 302.08974 * 3 2 1 34 34 H 1.08996 * 109.47265 * 62.08560 * 3 2 1 35 35 H 1.09002 * 110.72170 * 21.39704 * 4 2 1 36 36 H 1.08991 * 110.72212 * 144.50506 * 4 2 1 37 37 H 1.08994 * 110.66357 * 204.15328 * 5 4 2 38 38 H 1.09007 * 110.66438 * 81.02186 * 5 4 2 39 39 H 1.09003 * 109.46862 * 292.59873 * 7 6 5 40 40 H 1.09001 * 109.46817 * 172.60505 * 7 6 5 41 41 H 1.09006 * 109.47405 * 60.00620 * 8 7 6 42 42 H 1.09001 * 109.47667 * 299.99785 * 8 7 6 43 43 H 0.97004 * 120.00070 * 0.02562 * 9 8 7 44 44 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 45 45 H 1.08002 * 119.99547 * 359.97438 * 23 22 12 46 46 H 1.08001 * 119.99875 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00421 * 179.72884 * 25 24 23 48 48 H 1.07996 * 120.00326 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00212 * 179.97438 * 27 26 25 50 50 H 1.08996 * 109.92138 * 94.01906 * 28 6 5 51 51 H 1.08997 * 109.92352 * 215.11967 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0602 1.4353 0.0000 4 6 2.0666 -0.7725 -1.2269 5 6 2.3584 -2.1803 -0.6494 6 7 2.8809 -1.8884 0.7099 7 6 2.7668 -3.0653 1.5817 8 6 3.4141 -4.2711 0.8979 9 7 3.2998 -5.4449 1.7670 10 6 3.8037 -6.6299 1.3689 11 8 4.3513 -6.7245 0.2909 12 6 3.6856 -7.8374 2.2627 13 1 4.1913 -7.6406 3.2080 14 6 2.2303 -8.1295 2.5229 15 1 1.8653 -8.1935 3.5373 16 6 1.3647 -8.3150 1.4658 17 7 1.8164 -8.2756 0.2313 18 14 -0.4496 -8.6225 1.7871 19 1 -1.0246 -7.4680 2.5232 20 1 -1.1603 -8.7879 0.4937 21 1 -0.6064 -9.8555 2.5997 22 6 4.3233 -9.0252 1.5891 23 6 5.5744 -8.9044 1.0139 24 6 6.1590 -9.9937 0.3956 25 6 5.4931 -11.2043 0.3535 26 6 4.2426 -11.3257 0.9301 27 6 3.6575 -10.2360 1.5476 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.4811 0.9081 30 1 -0.3633 0.5459 -0.8706 31 1 -0.3633 -1.0269 -0.0374 32 1 3.1495 1.4202 -0.0375 33 1 1.6740 1.9652 -0.8707 34 1 1.7349 1.9428 0.9080 35 1 1.3102 -0.8260 -2.0100 36 1 2.9788 -0.3108 -1.6046 37 1 3.1105 -2.6935 -1.2486 38 1 1.4432 -2.7696 -0.5915 39 1 1.7144 -3.2765 1.7710 40 1 3.2734 -2.8680 2.5265 41 1 4.4666 -4.0599 0.7086 42 1 2.9075 -4.4684 -0.0469 43 1 2.8615 -5.3693 2.6290 44 1 1.2076 -8.4064 -0.5125 45 1 6.0947 -7.9585 1.0468 46 1 7.1363 -9.8992 -0.0542 47 1 5.9480 -12.0543 -0.1333 48 1 3.7220 -12.2713 0.8969 49 1 2.6803 -10.3307 1.9978 50 1 1.2324 -1.1530 1.8125 51 1 2.6804 -0.1101 1.8376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412340352.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:04 Heat of formation + Delta-G solvation = -16.529553 kcal Electronic energy + Delta-G solvation = -28795.983210 eV Core-core repulsion = 25080.527757 eV Total energy + Delta-G solvation = -3715.455452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72217 -38.86529 -37.40550 -35.24006 -33.58481 -33.04882 -30.80099 -30.01263 -29.63866 -28.56947 -27.54409 -26.99602 -24.78279 -23.83284 -22.83465 -21.23856 -20.69741 -20.37583 -19.14093 -19.09573 -16.81008 -16.08142 -15.80933 -15.58772 -15.19367 -14.86332 -14.77192 -14.58677 -14.21936 -13.92686 -13.67240 -13.51350 -13.49352 -13.14306 -12.98045 -12.64407 -12.41150 -12.21175 -12.06698 -11.97430 -11.92970 -11.64818 -11.53104 -11.26613 -11.11443 -10.96868 -10.92458 -10.79987 -10.77838 -10.70916 -10.55055 -10.41051 -10.02568 -9.64202 -9.36254 -8.70254 -8.43236 -8.26825 -7.94388 -7.65470 -7.36403 -6.12597 -4.29107 2.58164 2.64947 3.19140 3.27082 3.27846 3.80794 4.19239 4.31548 4.34961 4.51772 4.57176 4.72641 5.06270 5.10741 5.15143 5.15977 5.21452 5.30577 5.32796 5.42321 5.46595 5.53991 5.66444 5.71512 5.74284 5.78529 5.84200 5.88783 5.99505 6.00706 6.02210 6.08227 6.08898 6.18797 6.27684 6.33617 6.44371 6.62446 6.71327 6.84352 6.86025 6.94026 7.02654 7.16954 7.25098 7.55761 7.60260 7.67604 7.69876 7.82439 8.19853 8.30424 8.63055 8.83388 9.37188 9.74075 10.87596 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.015302 B = 0.003055 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.388279 B = 9161.636297 C =10289.347239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.115 4.115 5 C 0.032 3.968 6 N -0.512 5.512 7 C 0.037 3.963 8 C 0.130 3.870 9 N -0.737 5.737 10 C 0.551 3.449 11 O -0.547 6.547 12 C 0.057 3.943 13 H 0.056 0.944 14 C -0.541 4.541 15 H 0.066 0.934 16 C 0.075 3.925 17 N -0.841 5.841 18 Si 0.886 3.114 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.014 4.014 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.065 4.065 28 C 0.044 3.956 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.394 0.606 44 H 0.265 0.735 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.128 0.872 50 H 0.045 0.955 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 13.151 1.502 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.153 4.153 5 C -0.096 4.096 6 N -0.236 5.236 7 C -0.091 4.091 8 C 0.005 3.995 9 N -0.391 5.391 10 C 0.340 3.660 11 O -0.423 6.423 12 C 0.036 3.964 13 H 0.074 0.926 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.473 5.473 18 Si 0.713 3.287 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.015 4.015 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.163 4.163 26 C -0.166 4.166 27 C -0.083 4.083 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.227 0.773 44 H 0.075 0.925 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.145 0.855 50 H 0.064 0.936 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.553 13.188 0.469 13.208 hybrid contribution -2.376 -0.396 0.263 2.423 sum -1.823 12.792 0.732 12.942 Atomic orbital electron populations 1.21912 0.94188 1.01857 1.01723 1.21423 0.95375 0.95799 0.95257 1.21839 1.01188 0.94679 1.01448 1.22635 1.01083 0.95040 0.96536 1.23274 0.99123 0.96640 0.90545 1.64769 1.50787 1.05703 1.02367 1.22480 0.99539 0.90156 0.96935 1.21016 1.00321 0.84164 0.94026 1.45734 1.62711 1.08871 1.21750 1.20979 0.74675 0.83033 0.87270 1.90537 1.44270 1.84303 1.23231 1.17872 0.97236 0.88267 0.93069 0.92572 1.20658 0.90966 1.53069 0.93206 0.91608 1.25045 0.98499 0.94550 0.95205 1.70070 1.34793 1.44555 0.97901 0.86751 0.85367 0.79009 0.77570 1.20216 1.21311 1.19914 1.19823 0.91568 0.94935 0.95192 1.20974 0.95937 0.96951 0.97940 1.20818 0.99500 0.93763 1.02194 1.20767 0.96190 0.97031 1.02343 1.20984 0.95835 0.98493 1.01336 1.21145 0.98956 0.91595 0.96610 1.23027 0.95664 0.93370 0.96307 0.92590 0.92473 0.92645 0.92141 0.92745 0.92769 0.91152 0.90647 0.89560 0.93463 0.94145 0.90274 0.92081 0.92457 0.77253 0.92504 0.87493 0.88118 0.88241 0.88090 0.85471 0.93635 0.90341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.21 37.16 0.31 -0.92 16 2 C -0.08 -0.74 0.97 -153.14 -0.15 -0.89 16 3 C -0.13 -1.08 8.24 37.16 0.31 -0.77 16 4 C -0.11 -1.19 6.16 -24.87 -0.15 -1.34 16 5 C 0.03 0.41 5.10 -1.90 -0.01 0.40 16 6 N -0.51 -6.65 5.40 -230.46 -1.24 -7.90 16 7 C 0.04 0.52 5.14 -3.83 -0.02 0.50 16 8 C 0.13 2.29 5.33 -4.04 -0.02 2.26 16 9 N -0.74 -14.59 5.46 -60.30 -0.33 -14.92 16 10 C 0.55 13.07 5.45 -10.99 -0.06 13.01 16 11 O -0.55 -14.70 13.95 5.55 0.08 -14.62 16 12 C 0.06 1.34 2.78 -94.08 -0.26 1.08 16 13 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.54 -13.14 7.12 -34.44 -0.25 -13.38 16 15 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.08 1.89 3.99 -17.82 -0.07 1.82 16 17 N -0.84 -22.92 10.89 55.43 0.60 -22.32 16 18 Si 0.89 19.77 29.54 -169.99 -5.02 14.74 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 C -0.01 -0.34 4.52 -104.62 -0.47 -0.81 16 23 C -0.10 -2.30 8.21 -39.59 -0.33 -2.62 16 24 C -0.14 -3.01 10.05 -39.59 -0.40 -3.41 16 25 C -0.15 -2.92 10.05 -39.59 -0.40 -3.31 16 26 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 27 C -0.07 -1.54 8.20 -39.58 -0.32 -1.86 16 28 C 0.04 0.48 6.02 -2.75 -0.02 0.47 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.51 8.11 -51.93 -0.42 0.09 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.67 7.85 -51.93 -0.41 0.26 16 36 H 0.07 0.76 7.84 -51.93 -0.41 0.35 16 37 H 0.09 1.19 7.66 -51.93 -0.40 0.79 16 38 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 39 H 0.04 0.58 7.81 -51.93 -0.41 0.17 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 1.14 6.79 -51.93 -0.35 0.78 16 43 H 0.39 7.05 8.36 -40.82 -0.34 6.71 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.11 2.44 7.01 -52.49 -0.37 2.07 16 46 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 49 H 0.13 3.10 6.02 -52.49 -0.32 2.78 16 50 H 0.05 0.50 7.11 -51.93 -0.37 0.13 16 51 H 0.08 0.81 7.69 -51.93 -0.40 0.41 16 LS Contribution 397.83 15.07 6.00 6.00 Total: -1.00 -29.34 397.83 -11.43 -40.76 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -8.80 Total: 11.58 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.71 Total: -13.33 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.97 Total: -45.13 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.08 Total: -14.62 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.34 -11.43 -40.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412340352.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.235 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds