Wall clock time and date at job start Tue Mar 31 2020 16:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.27633 * 2 1 4 4 C 1.54776 * 110.15159 * 237.80257 * 2 1 3 5 5 C 1.54943 * 102.83563 * 262.84771 * 4 2 1 6 6 N 1.48531 * 103.37491 * 322.80042 * 5 4 2 7 7 C 1.46895 * 110.99713 * 159.63669 * 6 5 4 8 8 C 1.53000 * 109.47195 * 184.48524 * 7 6 5 9 9 N 1.46501 * 109.47460 * 185.19201 * 8 7 6 10 10 C 1.34777 * 120.00247 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00220 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47405 * 59.98939 * 12 10 9 14 14 C 1.50708 * 109.46527 * 299.99202 * 12 10 9 15 15 H 1.07998 * 120.00165 * 332.98485 * 14 12 10 16 16 C 1.37877 * 119.99720 * 152.98480 * 14 12 10 17 17 N 1.31523 * 119.99959 * 5.07489 * 16 14 12 18 18 Si 1.86793 * 120.00021 * 185.07531 * 16 14 12 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47383 * 119.99816 * 18 16 14 21 21 H 1.48499 * 109.47347 * 240.00215 * 18 16 14 22 22 C 1.50703 * 109.47150 * 179.97438 * 12 10 9 23 23 C 1.38234 * 119.99928 * 66.18034 * 22 12 10 24 24 C 1.38231 * 119.99423 * 179.80799 * 23 22 12 25 25 C 1.38233 * 120.00428 * 0.40092 * 24 23 22 26 26 C 1.38237 * 119.99991 * 359.85366 * 25 24 23 27 27 C 1.38230 * 119.99601 * 246.45308 * 22 12 10 28 28 C 1.47900 * 105.82374 * 39.12313 * 6 5 4 29 29 H 1.09003 * 109.46774 * 297.91103 * 1 2 3 30 30 H 1.08999 * 109.47273 * 57.90389 * 1 2 3 31 31 H 1.08996 * 109.47069 * 177.91577 * 1 2 3 32 32 H 1.09001 * 109.47228 * 182.09060 * 3 2 1 33 33 H 1.08997 * 109.47120 * 302.09462 * 3 2 1 34 34 H 1.09000 * 109.47265 * 62.08962 * 3 2 1 35 35 H 1.08997 * 110.65306 * 144.56952 * 4 2 1 36 36 H 1.09004 * 110.87934 * 21.22843 * 4 2 1 37 37 H 1.09001 * 110.66624 * 204.28300 * 5 4 2 38 38 H 1.09000 * 110.66369 * 81.31663 * 5 4 2 39 39 H 1.09001 * 109.47539 * 304.48985 * 7 6 5 40 40 H 1.09000 * 109.47522 * 64.49167 * 7 6 5 41 41 H 1.09003 * 109.47500 * 305.19279 * 8 7 6 42 42 H 1.08995 * 109.47117 * 65.18835 * 8 7 6 43 43 H 0.97001 * 119.99698 * 359.97438 * 9 8 7 44 44 H 0.96993 * 119.99699 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.00075 * 0.02562 * 23 22 12 46 46 H 1.08006 * 120.00114 * 180.23287 * 24 23 22 47 47 H 1.08002 * 120.00425 * 179.83012 * 25 24 23 48 48 H 1.07994 * 120.00312 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00316 * 359.97438 * 27 22 12 50 50 H 1.09006 * 109.91531 * 94.01859 * 28 6 5 51 51 H 1.08999 * 109.91992 * 215.11823 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0632 -0.7742 -1.2296 5 6 2.3584 -2.1803 -0.6495 6 7 2.8809 -1.8884 0.7099 7 6 2.7668 -3.0653 1.5816 8 6 3.2092 -2.6952 2.9987 9 7 3.2139 -3.8958 3.8381 10 6 3.5722 -3.8103 5.1346 11 8 3.8913 -2.7394 5.6062 12 6 3.5776 -5.0455 5.9979 13 1 4.2696 -5.7772 5.5811 14 6 2.1907 -5.6337 6.0417 15 1 1.3296 -4.9974 5.9000 16 6 2.0213 -6.9841 6.2624 17 7 3.0616 -7.7416 6.5339 18 14 0.3143 -7.7377 6.1760 19 1 -0.6780 -6.6802 5.8562 20 1 0.2859 -8.7789 5.1175 21 1 -0.0220 -8.3531 7.4849 22 6 4.0133 -4.6808 7.3938 23 6 3.2178 -3.8633 8.1747 24 6 3.6156 -3.5322 9.4564 25 6 4.8128 -4.0116 9.9543 26 6 5.6107 -4.8249 9.1714 27 6 5.2110 -5.1593 7.8910 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.4811 0.9082 30 1 -0.3634 0.5460 -0.8706 31 1 -0.3633 -1.0269 -0.0374 32 1 3.1495 1.4201 -0.0375 33 1 1.6740 1.9652 -0.8706 34 1 1.7349 1.9427 0.9081 35 1 2.9758 -0.3136 -1.6077 36 1 1.3058 -0.8308 -2.0114 37 1 3.1105 -2.6936 -1.2487 38 1 1.4448 -2.7721 -0.5916 39 1 1.7309 -3.4039 1.6011 40 1 3.4029 -3.8637 1.1994 41 1 4.2125 -2.2703 2.9668 42 1 2.5178 -1.9630 3.4156 43 1 2.9583 -4.7522 3.4610 44 1 2.9425 -8.6916 6.6889 45 1 2.2839 -3.4863 7.7847 46 1 2.9924 -2.8965 10.0681 47 1 5.1249 -3.7507 10.9547 48 1 6.5462 -5.1991 9.5601 49 1 5.8344 -5.7947 7.2794 50 1 1.2323 -1.1531 1.8125 51 1 2.6805 -0.1102 1.8376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412340354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:07 Heat of formation + Delta-G solvation = -25.610585 kcal Electronic energy + Delta-G solvation = -28288.260746 eV Core-core repulsion = 24572.411511 eV Total energy + Delta-G solvation = -3715.849235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.82159 -39.04470 -37.67663 -35.34692 -33.63149 -33.36237 -31.05341 -30.37225 -29.86422 -28.21785 -27.56660 -27.02834 -25.56984 -23.83830 -22.33348 -21.52361 -21.08375 -20.73232 -19.24995 -19.15251 -16.79227 -16.19415 -16.11163 -15.96170 -15.61827 -14.89818 -14.77503 -14.51244 -14.22812 -14.07702 -13.82952 -13.74006 -13.56676 -13.36501 -13.04586 -12.75996 -12.63199 -12.39205 -12.20797 -12.02407 -11.85918 -11.71362 -11.63095 -11.51683 -11.23521 -11.09075 -11.03230 -10.95534 -10.87773 -10.79120 -10.68828 -10.38074 -10.22830 -10.00514 -9.39028 -8.73905 -8.63749 -8.52809 -8.32399 -7.87052 -7.53509 -6.25679 -4.33130 2.45648 2.47865 3.17349 3.26818 3.29410 3.62824 3.74052 4.25115 4.28694 4.31267 4.46757 4.63617 4.90884 4.97981 5.06540 5.07987 5.11396 5.18211 5.21181 5.39672 5.44808 5.47354 5.56473 5.57710 5.64152 5.71613 5.78084 5.78720 5.83772 5.85294 5.94593 5.95574 6.02339 6.06934 6.11570 6.16988 6.27676 6.39306 6.55838 6.66172 6.75043 6.88942 6.90900 7.04101 7.18166 7.24398 7.43804 7.51338 7.63986 7.79926 8.01446 8.11642 8.37976 8.70379 9.24013 9.33666 10.82341 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002961 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.994811 B = 9452.603636 C =10770.017201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.114 4.114 5 C 0.035 3.965 6 N -0.512 5.512 7 C 0.036 3.964 8 C 0.125 3.875 9 N -0.731 5.731 10 C 0.528 3.472 11 O -0.565 6.565 12 C 0.054 3.946 13 H 0.081 0.919 14 C -0.517 4.517 15 H 0.063 0.937 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.282 1.282 22 C -0.005 4.005 23 C -0.085 4.085 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.114 4.114 28 C 0.040 3.960 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.404 0.596 44 H 0.265 0.735 45 H 0.109 0.891 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.105 0.895 49 H 0.111 0.889 50 H 0.049 0.951 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 10.155 -12.457 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.079 4.079 3 C -0.193 4.193 4 C -0.152 4.152 5 C -0.093 4.093 6 N -0.236 5.236 7 C -0.092 4.092 8 C 0.000 4.000 9 N -0.384 5.384 10 C 0.318 3.682 11 O -0.443 6.443 12 C 0.033 3.967 13 H 0.099 0.901 14 C -0.554 4.554 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.509 5.509 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.006 4.006 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.168 4.168 26 C -0.151 4.151 27 C -0.132 4.132 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.238 0.762 44 H 0.075 0.925 45 H 0.128 0.872 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.129 0.871 50 H 0.067 0.933 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.146 10.859 -12.084 16.287 hybrid contribution -1.971 -1.323 0.005 2.374 sum -3.117 9.536 -12.079 15.702 Atomic orbital electron populations 1.21916 0.94170 1.01711 1.01895 1.21463 0.95407 0.95942 0.95048 1.21844 1.01233 0.94618 1.01596 1.22649 1.01111 0.94819 0.96605 1.23221 0.98618 0.97024 0.90431 1.64735 1.51036 1.05825 1.02028 1.22455 1.00291 0.93351 0.93121 1.21098 1.01729 0.88752 0.88410 1.45862 1.70897 1.10755 1.10934 1.21562 0.73598 0.91681 0.81368 1.90588 1.49092 1.31237 1.73428 1.18076 0.99885 0.90659 0.88042 0.90080 1.20715 0.89979 0.92912 1.51842 0.91912 1.24965 0.97113 0.97128 0.93931 1.69952 1.29557 1.06202 1.45199 0.86461 0.84039 0.79239 0.77912 1.19591 1.20740 1.20804 1.19965 0.91520 0.92023 0.97081 1.20799 0.99122 0.97199 0.93189 1.20931 0.96904 1.01328 0.96236 1.20776 0.96018 1.00880 0.99091 1.20886 0.99374 0.99791 0.95046 1.20950 0.96577 1.00081 0.95608 1.23088 0.96015 0.93406 0.96275 0.92404 0.92503 0.92771 0.92101 0.92773 0.92549 0.90617 0.91095 0.90016 0.93714 0.93999 0.89901 0.91434 0.92465 0.76156 0.92476 0.87243 0.87708 0.87814 0.87656 0.87138 0.93278 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.20 37.16 0.30 -0.83 16 2 C -0.08 -0.69 0.97 -153.05 -0.15 -0.84 16 3 C -0.14 -1.09 8.24 37.16 0.31 -0.78 16 4 C -0.11 -0.94 6.18 -24.77 -0.15 -1.10 16 5 C 0.03 0.33 6.55 -1.90 -0.01 0.32 16 6 N -0.51 -5.95 5.36 -230.45 -1.23 -7.18 16 7 C 0.04 0.46 4.94 -3.83 -0.02 0.44 16 8 C 0.12 1.96 5.42 -4.04 -0.02 1.94 16 9 N -0.73 -13.39 5.46 -60.29 -0.33 -13.72 16 10 C 0.53 11.82 7.04 -10.99 -0.08 11.74 16 11 O -0.56 -13.96 15.42 5.55 0.09 -13.87 16 12 C 0.05 1.30 2.24 -94.07 -0.21 1.09 16 13 H 0.08 2.03 7.38 -51.93 -0.38 1.65 16 14 C -0.52 -12.90 7.46 -34.44 -0.26 -13.15 16 15 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 16 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 17 N -0.87 -23.10 12.98 55.43 0.72 -22.38 16 18 Si 0.90 19.85 29.54 -169.99 -5.02 14.82 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 22 C 0.00 -0.12 4.30 -104.62 -0.45 -0.57 16 23 C -0.08 -1.97 8.32 -39.59 -0.33 -2.30 16 24 C -0.14 -2.78 10.05 -39.59 -0.40 -3.18 16 25 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.13 -2.67 10.05 -39.58 -0.40 -3.06 16 27 C -0.11 -2.57 9.67 -39.58 -0.38 -2.95 16 28 C 0.04 0.44 4.79 -2.75 -0.01 0.43 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.62 7.85 -51.93 -0.41 0.22 16 36 H 0.07 0.50 7.86 -51.93 -0.41 0.10 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.42 7.93 -51.93 -0.41 0.01 16 39 H 0.04 0.52 8.00 -51.93 -0.42 0.11 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.95 7.12 -51.93 -0.37 0.58 16 43 H 0.40 6.89 8.36 -40.82 -0.34 6.55 16 44 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.11 2.57 7.89 -52.49 -0.41 2.15 16 46 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 48 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 49 H 0.11 2.40 7.96 -52.48 -0.42 1.98 16 50 H 0.05 0.58 6.97 -51.93 -0.36 0.22 16 51 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -28.99 408.55 -11.32 -40.31 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.95 Total: 10.19 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.75 Total: -14.32 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: -0.84 Total: -43.29 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -28.99 -11.32 -40.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412340354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.703 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds