Wall clock time and date at job start Tue Mar 31 2020 16:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 110.27633 * 2 1 4 4 C 1.54776 * 110.15159 * 237.80257 * 2 1 3 5 5 C 1.54943 * 102.83563 * 262.84771 * 4 2 1 6 6 N 1.48531 * 103.37491 * 322.80042 * 5 4 2 7 7 C 1.46895 * 110.99713 * 159.63669 * 6 5 4 8 8 C 1.53000 * 109.47195 * 184.48524 * 7 6 5 9 9 N 1.46501 * 109.47460 * 185.19201 * 8 7 6 10 10 C 1.34777 * 120.00247 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.50700 * 120.00220 * 180.02562 * 10 9 8 13 13 H 1.08995 * 109.47405 * 59.98939 * 12 10 9 14 14 C 1.50708 * 109.46527 * 299.99202 * 12 10 9 15 15 H 1.07998 * 120.00165 * 332.98485 * 14 12 10 16 16 C 1.37877 * 119.99720 * 152.98480 * 14 12 10 17 17 N 1.31523 * 119.99959 * 5.07489 * 16 14 12 18 18 Si 1.86793 * 120.00021 * 185.07531 * 16 14 12 19 19 H 1.48502 * 109.47039 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47383 * 119.99816 * 18 16 14 21 21 H 1.48499 * 109.47347 * 240.00215 * 18 16 14 22 22 C 1.50703 * 109.47150 * 179.97438 * 12 10 9 23 23 C 1.38234 * 119.99928 * 66.18034 * 22 12 10 24 24 C 1.38231 * 119.99423 * 179.80799 * 23 22 12 25 25 C 1.38233 * 120.00428 * 0.40092 * 24 23 22 26 26 C 1.38237 * 119.99991 * 359.85366 * 25 24 23 27 27 C 1.38230 * 119.99601 * 246.45308 * 22 12 10 28 28 C 1.47900 * 105.82374 * 39.12313 * 6 5 4 29 29 H 1.09003 * 109.46774 * 297.91103 * 1 2 3 30 30 H 1.08999 * 109.47273 * 57.90389 * 1 2 3 31 31 H 1.08996 * 109.47069 * 177.91577 * 1 2 3 32 32 H 1.09001 * 109.47228 * 182.09060 * 3 2 1 33 33 H 1.08997 * 109.47120 * 302.09462 * 3 2 1 34 34 H 1.09000 * 109.47265 * 62.08962 * 3 2 1 35 35 H 1.08997 * 110.65306 * 144.56952 * 4 2 1 36 36 H 1.09004 * 110.87934 * 21.22843 * 4 2 1 37 37 H 1.09001 * 110.66624 * 204.28300 * 5 4 2 38 38 H 1.09000 * 110.66369 * 81.31663 * 5 4 2 39 39 H 1.09001 * 109.47539 * 304.48985 * 7 6 5 40 40 H 1.09000 * 109.47522 * 64.49167 * 7 6 5 41 41 H 1.09003 * 109.47500 * 305.19279 * 8 7 6 42 42 H 1.08995 * 109.47117 * 65.18835 * 8 7 6 43 43 H 0.97001 * 119.99698 * 359.97438 * 9 8 7 44 44 H 0.96993 * 119.99699 * 180.02562 * 17 16 14 45 45 H 1.08000 * 120.00075 * 0.02562 * 23 22 12 46 46 H 1.08006 * 120.00114 * 180.23287 * 24 23 22 47 47 H 1.08002 * 120.00425 * 179.83012 * 25 24 23 48 48 H 1.07994 * 120.00312 * 179.97438 * 26 25 24 49 49 H 1.08004 * 120.00316 * 359.97438 * 27 22 12 50 50 H 1.09006 * 109.91531 * 94.01859 * 28 6 5 51 51 H 1.08999 * 109.91992 * 215.11823 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0602 1.4352 0.0000 4 6 2.0632 -0.7742 -1.2296 5 6 2.3584 -2.1803 -0.6495 6 7 2.8809 -1.8884 0.7099 7 6 2.7668 -3.0653 1.5816 8 6 3.2092 -2.6952 2.9987 9 7 3.2139 -3.8958 3.8381 10 6 3.5722 -3.8103 5.1346 11 8 3.8913 -2.7394 5.6062 12 6 3.5776 -5.0455 5.9979 13 1 4.2696 -5.7772 5.5811 14 6 2.1907 -5.6337 6.0417 15 1 1.3296 -4.9974 5.9000 16 6 2.0213 -6.9841 6.2624 17 7 3.0616 -7.7416 6.5339 18 14 0.3143 -7.7377 6.1760 19 1 -0.6780 -6.6802 5.8562 20 1 0.2859 -8.7789 5.1175 21 1 -0.0220 -8.3531 7.4849 22 6 4.0133 -4.6808 7.3938 23 6 3.2178 -3.8633 8.1747 24 6 3.6156 -3.5322 9.4564 25 6 4.8128 -4.0116 9.9543 26 6 5.6107 -4.8249 9.1714 27 6 5.2110 -5.1593 7.8910 28 6 2.0645 -0.7672 1.2236 29 1 -0.3633 0.4811 0.9082 30 1 -0.3634 0.5460 -0.8706 31 1 -0.3633 -1.0269 -0.0374 32 1 3.1495 1.4201 -0.0375 33 1 1.6740 1.9652 -0.8706 34 1 1.7349 1.9427 0.9081 35 1 2.9758 -0.3136 -1.6077 36 1 1.3058 -0.8308 -2.0114 37 1 3.1105 -2.6936 -1.2487 38 1 1.4448 -2.7721 -0.5916 39 1 1.7309 -3.4039 1.6011 40 1 3.4029 -3.8637 1.1994 41 1 4.2125 -2.2703 2.9668 42 1 2.5178 -1.9630 3.4156 43 1 2.9583 -4.7522 3.4610 44 1 2.9425 -8.6916 6.6889 45 1 2.2839 -3.4863 7.7847 46 1 2.9924 -2.8965 10.0681 47 1 5.1249 -3.7507 10.9547 48 1 6.5462 -5.1991 9.5601 49 1 5.8344 -5.7947 7.2794 50 1 1.2323 -1.1531 1.8125 51 1 2.6805 -0.1102 1.8376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412340354.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:06 Heat of formation + Delta-G solvation = -41.992077 kcal Electronic energy + Delta-G solvation = -28288.971101 eV Core-core repulsion = 24572.411511 eV Total energy + Delta-G solvation = -3716.559590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.97468 -40.47429 -39.31625 -36.54499 -35.51688 -34.60105 -32.86772 -31.52097 -31.34474 -29.55839 -28.47064 -28.19006 -26.64287 -25.60680 -23.42354 -23.17619 -22.34233 -22.05289 -20.91298 -19.96136 -18.68672 -17.80005 -17.56203 -17.08285 -16.97154 -16.29642 -16.17827 -16.05567 -15.61329 -15.43108 -15.07540 -14.88518 -14.59275 -14.47087 -14.23605 -14.06135 -13.92322 -13.77133 -13.73431 -13.42369 -13.26980 -12.86731 -12.79010 -12.76798 -12.68818 -12.43011 -12.27486 -12.20913 -12.10341 -11.94500 -11.68435 -11.61014 -11.51549 -11.38543 -11.25666 -10.66751 -10.48464 -9.94526 -9.54234 -9.44902 -9.24109 -8.20116 -6.33199 0.77606 0.82253 1.40765 1.44408 1.54165 1.91774 2.34476 2.42902 3.08290 3.14410 3.30964 3.53627 3.66243 3.86892 3.94680 4.05916 4.22993 4.30505 4.33149 4.35343 4.39631 4.42694 4.46671 4.51341 4.55067 4.60448 4.73281 4.79859 4.85408 4.86093 4.88735 4.91722 4.94692 4.98392 5.06235 5.08153 5.09905 5.17579 5.28981 5.34433 5.38433 5.44886 5.46453 5.60703 5.65576 5.79451 5.83618 5.89163 5.94676 5.98739 6.24933 6.41636 6.69625 6.76634 7.34320 7.50971 8.87734 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012139 B = 0.002961 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.994811 B = 9452.603636 C =10770.017201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.108 4.108 5 C 0.033 3.967 6 N -0.522 5.522 7 C 0.048 3.952 8 C 0.131 3.869 9 N -0.718 5.718 10 C 0.527 3.473 11 O -0.592 6.592 12 C 0.057 3.943 13 H 0.061 0.939 14 C -0.519 4.519 15 H 0.053 0.947 16 C 0.034 3.966 17 N -0.901 5.901 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.272 1.272 21 H -0.287 1.287 22 C -0.033 4.033 23 C -0.112 4.112 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.131 4.131 27 C -0.139 4.139 28 C 0.037 3.963 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.411 0.589 44 H 0.266 0.734 45 H 0.093 0.907 46 H 0.135 0.865 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.106 0.894 50 H 0.038 0.962 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 10.555 -12.830 16.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.190 4.190 4 C -0.146 4.146 5 C -0.094 4.094 6 N -0.247 5.247 7 C -0.080 4.080 8 C 0.007 3.993 9 N -0.370 5.370 10 C 0.315 3.685 11 O -0.474 6.474 12 C 0.036 3.964 13 H 0.079 0.921 14 C -0.556 4.556 15 H 0.072 0.928 16 C -0.168 4.168 17 N -0.537 5.537 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.213 1.213 22 C -0.034 4.034 23 C -0.131 4.131 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.157 4.157 28 C -0.091 4.091 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.246 0.754 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.153 0.847 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.124 0.876 50 H 0.056 0.944 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.712 11.257 -12.501 16.909 hybrid contribution -1.739 -1.392 0.158 2.234 sum -3.451 9.865 -12.344 16.174 Atomic orbital electron populations 1.21891 0.93449 1.01647 1.02419 1.21473 0.95944 0.96128 0.94172 1.21819 1.00842 0.94205 1.02171 1.22649 1.01723 0.93647 0.96550 1.23317 0.98926 0.98085 0.89121 1.64731 1.51689 1.05412 1.02862 1.22299 1.00478 0.94070 0.91178 1.21129 1.00913 0.87351 0.89909 1.45759 1.69273 1.12018 1.09984 1.21380 0.73762 0.90848 0.82463 1.90555 1.50663 1.31875 1.74275 1.17967 0.98929 0.90663 0.88838 0.92111 1.20767 0.90155 0.93064 1.51657 0.92830 1.25599 1.00179 0.97401 0.93634 1.70053 1.31204 1.06353 1.46138 0.85546 0.80177 0.78501 0.77688 1.19316 1.19692 1.21312 1.20083 0.92738 0.93358 0.97194 1.20840 0.98976 0.98416 0.94824 1.21312 0.97804 1.01075 0.95302 1.21257 0.94942 0.99375 1.00665 1.21300 1.00624 0.99055 0.93894 1.21111 0.96512 1.00887 0.97181 1.23101 0.95338 0.93369 0.97244 0.92878 0.90914 0.93200 0.92719 0.91235 0.92864 0.90409 0.89301 0.89207 0.93418 0.93623 0.89002 0.92554 0.93497 0.75352 0.92454 0.88835 0.84746 0.83575 0.84299 0.87588 0.94408 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.20 71.98 0.59 -1.43 16 2 C -0.08 -1.27 0.97 -51.24 -0.05 -1.32 16 3 C -0.13 -1.99 8.24 71.98 0.59 -1.39 16 4 C -0.11 -1.57 6.18 31.86 0.20 -1.37 16 5 C 0.03 0.57 6.55 86.65 0.57 1.14 16 6 N -0.52 -11.88 5.36 -883.01 -4.73 -16.62 16 7 C 0.05 1.20 4.94 86.30 0.43 1.63 16 8 C 0.13 4.25 5.42 86.38 0.47 4.72 16 9 N -0.72 -27.18 5.46 -463.06 -2.53 -29.71 16 10 C 0.53 24.56 7.04 87.66 0.62 25.18 16 11 O -0.59 -30.49 15.42 -3.04 -0.05 -30.54 16 12 C 0.06 2.85 2.24 -13.03 -0.03 2.82 16 13 H 0.06 3.22 7.38 -2.39 -0.02 3.20 16 14 C -0.52 -26.62 7.46 25.60 0.19 -26.43 16 15 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 16 C 0.03 1.75 5.45 84.65 0.46 2.21 16 17 N -0.90 -48.50 12.98 21.45 0.28 -48.22 16 18 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 19 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 C -0.03 -1.62 4.30 -19.87 -0.09 -1.71 16 23 C -0.11 -5.32 8.32 22.27 0.19 -5.13 16 24 C -0.14 -5.43 10.05 22.27 0.22 -5.21 16 25 C -0.14 -5.20 10.05 22.27 0.22 -4.97 16 26 C -0.13 -5.03 10.05 22.27 0.22 -4.81 16 27 C -0.14 -6.34 9.67 22.27 0.22 -6.13 16 28 C 0.04 0.83 4.79 86.45 0.41 1.25 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 1.12 7.85 -2.39 -0.02 1.10 16 36 H 0.09 1.00 7.86 -2.38 -0.02 0.99 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 38 H 0.05 0.82 7.93 -2.39 -0.02 0.80 16 39 H 0.05 1.11 8.00 -2.39 -0.02 1.09 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.63 7.12 -2.39 -0.02 1.61 16 43 H 0.41 14.36 8.36 -92.71 -0.77 13.58 16 44 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 45 H 0.09 4.58 7.89 -2.91 -0.02 4.56 16 46 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 47 H 0.15 4.01 8.06 -2.91 -0.02 3.98 16 48 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 49 H 0.11 4.78 7.96 -2.91 -0.02 4.75 16 50 H 0.04 0.91 6.97 -2.38 -0.02 0.89 16 51 H 0.07 1.68 7.69 -2.39 -0.02 1.66 16 Total: -1.00 -63.55 408.55 0.55 -63.00 By element: Atomic # 1 Polarization: 39.96 SS G_CDS: 0.12 Total: 40.08 kcal Atomic # 6 Polarization: -26.39 SS G_CDS: 5.43 Total: -20.95 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -6.98 Total: -94.55 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -63.55 0.55 -63.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412340354.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.004 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds