Wall clock time and date at job start Tue Mar 31 2020 16:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53479 * 1 3 3 C 1.53109 * 107.19247 * 2 1 4 4 C 1.54702 * 107.56050 * 243.87741 * 2 1 3 5 5 C 1.54780 * 110.31446 * 250.91641 * 4 2 1 6 6 N 1.43825 * 110.18474 * 279.74362 * 5 4 2 7 7 C 1.45359 * 107.08291 * 95.86897 * 6 5 4 8 8 C 1.46000 * 116.69027 * 286.48195 * 7 6 5 9 9 N 1.43347 * 107.47466 * 116.63098 * 2 1 3 10 10 C 1.35546 * 119.17470 * 359.69089 * 9 2 1 11 11 O 1.21276 * 119.99977 * 354.63848 * 10 9 2 12 12 C 1.50699 * 119.99731 * 174.64033 * 10 9 2 13 13 C 1.53002 * 109.46799 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46754 * 306.00369 * 13 12 10 15 15 C 1.50698 * 109.47045 * 66.00883 * 13 12 10 16 16 H 1.07996 * 120.00323 * 35.01130 * 15 13 12 17 17 C 1.37887 * 119.99367 * 215.01150 * 15 13 12 18 18 N 1.31516 * 119.99623 * 184.95730 * 17 15 13 19 19 Si 1.86792 * 120.00205 * 4.96476 * 17 15 13 20 20 H 1.48507 * 109.47309 * 94.83152 * 19 17 15 21 21 H 1.48496 * 109.47066 * 214.83535 * 19 17 15 22 22 H 1.48500 * 109.47368 * 334.83423 * 19 17 15 23 23 C 1.50705 * 109.46832 * 186.00492 * 13 12 10 24 24 C 1.38234 * 119.99934 * 294.68234 * 23 13 12 25 25 C 1.38234 * 119.99352 * 179.78984 * 24 23 13 26 26 C 1.38237 * 120.00479 * 0.43835 * 25 24 23 27 27 C 1.38235 * 119.99719 * 359.81317 * 26 25 24 28 28 C 1.38228 * 119.99878 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47026 * 306.60091 * 1 2 3 30 30 H 1.09000 * 109.47445 * 66.59926 * 1 2 3 31 31 H 1.09000 * 109.47486 * 186.59915 * 1 2 3 32 32 H 1.09003 * 109.47162 * 175.85261 * 3 2 1 33 33 H 1.09000 * 109.47236 * 295.85220 * 3 2 1 34 34 H 1.09006 * 109.46818 * 55.85564 * 3 2 1 35 35 H 1.09250 * 109.30286 * 10.97209 * 4 2 1 36 36 H 1.09092 * 109.56849 * 130.33966 * 4 2 1 37 37 H 1.09289 * 109.07755 * 160.06309 * 5 4 2 38 38 H 1.08810 * 109.76566 * 40.86259 * 5 4 2 39 39 H 1.00889 * 111.24483 * 333.65938 * 6 5 4 40 40 H 1.09490 * 108.45928 * 49.30886 * 7 6 5 41 41 H 1.09692 * 108.06988 * 164.49782 * 7 6 5 42 42 H 1.09860 * 109.35906 * 185.98783 * 8 7 6 43 43 H 1.09306 * 109.81240 * 304.27220 * 8 7 6 44 44 H 1.09002 * 109.47325 * 300.00068 * 12 10 9 45 45 H 1.08997 * 109.47299 * 59.99566 * 12 10 9 46 46 H 0.96995 * 120.00004 * 180.02562 * 18 17 15 47 47 H 1.07996 * 120.00467 * 359.97438 * 24 23 13 48 48 H 1.08006 * 119.99599 * 180.27139 * 25 24 23 49 49 H 1.08001 * 120.00186 * 179.83859 * 26 25 24 50 50 H 1.07999 * 119.99711 * 180.02562 * 27 26 25 51 51 H 1.08004 * 119.99655 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5348 0.0000 0.0000 3 6 1.9873 1.4627 0.0000 4 6 2.0015 -0.6494 -1.3243 5 6 2.6161 -2.0436 -1.0517 6 7 3.9720 -1.9069 -0.5918 7 6 3.9366 -1.9502 0.8607 8 6 3.4162 -0.7670 1.5395 9 7 1.9652 -0.6129 1.2223 10 6 1.0348 -1.0490 2.1062 11 8 -0.1413 -0.8321 1.9050 12 6 1.4618 -1.8033 3.3389 13 6 0.2269 -2.1782 4.1607 14 1 -0.3598 -1.2824 4.3639 15 6 -0.6112 -3.1631 3.3872 16 1 -0.1351 -3.8998 2.7572 17 6 -1.9861 -3.1236 3.4837 18 7 -2.7138 -4.0425 2.8872 19 14 -2.8151 -1.7650 4.4615 20 1 -3.1983 -0.6597 3.5467 21 1 -4.0303 -2.3029 5.1242 22 1 -1.8758 -1.2522 5.4910 23 6 0.6602 -2.8010 5.4629 24 6 1.3258 -4.0126 5.4618 25 6 1.7271 -4.5816 6.6559 26 6 1.4547 -3.9437 7.8517 27 6 0.7845 -2.7347 7.8530 28 6 0.3872 -2.1634 6.6586 29 1 -0.3633 0.6128 0.8250 30 1 -0.3634 0.4081 -0.9431 31 1 -0.3634 -1.0208 0.1181 32 1 3.0739 1.5068 0.0743 33 1 1.6667 1.9422 -0.9248 34 1 1.5437 1.9802 0.8506 35 1 1.1454 -0.7593 -1.9940 36 1 2.7462 -0.0109 -1.8018 37 1 2.6103 -2.6238 -1.9779 38 1 2.0233 -2.5674 -0.3046 39 1 4.3877 -1.0514 -0.9282 40 1 3.3414 -2.8164 1.1673 41 1 4.9574 -2.1282 1.2208 42 1 3.5427 -0.8844 2.6245 43 1 3.9796 0.1165 1.2283 44 1 1.9912 -2.7098 3.0451 45 1 2.1212 -1.1759 3.9386 46 1 -3.6810 -4.0145 2.9548 47 1 1.5350 -4.5130 4.5279 48 1 2.2510 -5.5261 6.6549 49 1 1.7659 -4.3896 8.7848 50 1 0.5721 -2.2361 8.7871 51 1 -0.1368 -1.2190 6.6597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576442879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:06 Heat of formation + Delta-G solvation = 31.903729 kcal Electronic energy + Delta-G solvation = -30530.636922 eV Core-core repulsion = 26817.281694 eV Total energy + Delta-G solvation = -3713.355227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75832 -38.67654 -37.72184 -35.36993 -34.04707 -33.65587 -31.64123 -30.21540 -29.60744 -28.71106 -27.28186 -26.87323 -25.92460 -22.97081 -22.82079 -21.95293 -21.84848 -20.96899 -19.27467 -18.06816 -17.03436 -16.92856 -16.20782 -15.75287 -15.41919 -15.04455 -14.73978 -14.54947 -14.27618 -13.99453 -13.93201 -13.59738 -13.32269 -13.11912 -12.83321 -12.72688 -12.56488 -12.37799 -12.35467 -12.09178 -11.96477 -11.68244 -11.58016 -11.30020 -11.24949 -11.13794 -10.86215 -10.81049 -10.75620 -10.54363 -10.45919 -10.33836 -9.84333 -9.55745 -9.12076 -8.65051 -8.44111 -8.22048 -8.14791 -8.02040 -7.80331 -5.99879 -3.96778 2.08917 2.13905 3.22429 3.34647 3.41431 3.46198 3.50046 4.38616 4.51096 4.56423 4.64829 4.86681 4.89973 5.01026 5.17297 5.21895 5.30634 5.40597 5.43763 5.51124 5.54267 5.56376 5.57968 5.67686 5.68908 5.83305 5.88933 5.91222 5.96769 6.00387 6.05692 6.07524 6.11809 6.14480 6.22541 6.24090 6.32286 6.57588 6.60216 6.67995 6.81504 6.87294 6.99591 7.01367 7.13671 7.23824 7.27516 7.35847 7.56875 7.71456 7.81231 7.82107 8.51401 8.94583 8.99622 9.65333 11.12890 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.004880 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.321264 B = 5736.739712 C = 6869.376792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 C -0.157 4.157 4 C -0.153 4.153 5 C 0.048 3.952 6 N -0.656 5.656 7 C 0.022 3.978 8 C 0.084 3.916 9 N -0.614 5.614 10 C 0.514 3.486 11 O -0.483 6.483 12 C -0.116 4.116 13 C 0.054 3.946 14 H 0.052 0.948 15 C -0.486 4.486 16 H 0.070 0.930 17 C 0.086 3.914 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.259 1.259 23 C -0.038 4.038 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.127 4.127 28 C -0.137 4.137 29 H 0.074 0.926 30 H 0.019 0.981 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.336 0.664 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.261 0.739 47 H 0.119 0.881 48 H 0.110 0.890 49 H 0.107 0.893 50 H 0.108 0.892 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.481 7.585 -2.030 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 C -0.216 4.216 4 C -0.193 4.193 5 C -0.083 4.083 6 N -0.284 5.284 7 C -0.109 4.109 8 C -0.040 4.040 9 N -0.351 5.351 10 C 0.304 3.696 11 O -0.354 6.354 12 C -0.157 4.157 13 C 0.034 3.966 14 H 0.070 0.930 15 C -0.523 4.523 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.535 5.535 19 Si 0.702 3.298 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.184 1.184 23 C -0.039 4.039 24 C -0.118 4.118 25 C -0.145 4.145 26 C -0.167 4.167 27 C -0.145 4.145 28 C -0.155 4.155 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.137 0.863 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.126 0.874 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.792 6.934 -2.258 15.602 hybrid contribution -0.969 1.502 0.691 1.916 sum 12.824 8.436 -1.568 15.430 Atomic orbital electron populations 1.22823 0.91759 1.04977 0.98960 1.20116 0.96467 0.91015 0.84595 1.22424 1.00527 0.96659 1.01953 1.23489 1.01682 0.97401 0.96735 1.21992 0.88931 0.95857 1.01486 1.60936 1.18260 1.41907 1.07264 1.21122 1.02085 0.98769 0.88970 1.21490 0.81572 0.99033 1.01922 1.48095 1.05674 1.62899 1.18446 1.21005 0.85673 0.78523 0.84425 1.90853 1.17697 1.53341 1.73559 1.21762 1.00478 0.99137 0.94275 1.18201 0.92491 0.97154 0.88727 0.93034 1.20562 0.90519 1.15264 1.25975 0.91207 1.24880 0.97323 0.94894 0.94543 1.69896 1.05659 1.33724 1.44268 0.86901 0.78849 0.83294 0.80723 1.20260 1.22289 1.18409 1.20751 0.92474 0.94413 0.96277 1.20962 0.98117 0.95296 0.97459 1.21057 1.01090 0.99421 0.92978 1.20861 1.02038 0.96459 0.97384 1.20963 0.99804 0.96315 0.97394 1.21147 1.01493 1.00371 0.92522 0.90750 0.96259 0.89944 0.93264 0.92251 0.92526 0.90499 0.91767 0.91527 0.90332 0.84592 0.90343 0.90680 0.89059 0.91129 0.89943 0.91642 0.92893 0.86299 0.87210 0.87453 0.87426 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 6.36 37.41 0.24 -1.96 16 2 C 0.16 2.24 1.02 -132.29 -0.14 2.11 16 3 C -0.16 -1.81 8.00 37.21 0.30 -1.52 16 4 C -0.15 -1.79 5.35 -24.90 -0.13 -1.92 16 5 C 0.05 0.59 6.02 -4.52 -0.03 0.57 16 6 N -0.66 -7.07 7.07 -119.33 -0.84 -7.91 16 7 C 0.02 0.23 5.51 -7.97 -0.04 0.18 16 8 C 0.08 0.89 5.54 -5.79 -0.03 0.86 16 9 N -0.61 -8.75 1.80 -160.41 -0.29 -9.04 16 10 C 0.51 9.50 7.23 -10.64 -0.08 9.43 16 11 O -0.48 -10.90 9.73 5.56 0.05 -10.85 16 12 C -0.12 -2.08 3.54 -27.88 -0.10 -2.18 16 13 C 0.05 1.18 1.24 -92.92 -0.12 1.07 16 14 H 0.05 1.22 4.58 -51.93 -0.24 0.99 16 15 C -0.49 -12.96 6.92 -34.44 -0.24 -13.19 16 16 H 0.07 2.03 8.06 -52.49 -0.42 1.60 16 17 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.87 22.54 27.31 -169.99 -4.64 17.90 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 22 H -0.26 -6.20 4.86 56.52 0.27 -5.93 16 23 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 24 C -0.10 -1.92 8.90 -39.58 -0.35 -2.27 16 25 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 27 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 28 C -0.14 -2.65 9.19 -39.59 -0.36 -3.01 16 29 H 0.07 1.42 6.43 -51.93 -0.33 1.09 16 30 H 0.02 0.29 7.85 -51.93 -0.41 -0.12 16 31 H 0.08 1.71 6.41 -51.94 -0.33 1.38 16 32 H 0.05 0.49 6.88 -51.93 -0.36 0.13 16 33 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 34 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 35 H 0.08 0.93 7.40 -51.79 -0.38 0.55 16 36 H 0.06 0.63 7.19 -51.88 -0.37 0.26 16 37 H 0.07 0.81 8.17 -51.77 -0.42 0.38 16 38 H 0.08 1.22 6.59 -52.04 -0.34 0.87 16 39 H 0.34 3.07 8.07 -39.30 -0.32 2.75 16 40 H 0.08 1.01 7.15 -51.65 -0.37 0.64 16 41 H 0.07 0.67 8.19 -51.54 -0.42 0.25 16 42 H 0.09 0.92 6.25 -51.44 -0.32 0.59 16 43 H 0.07 0.63 6.86 -51.76 -0.35 0.28 16 44 H 0.08 1.41 7.62 -51.93 -0.40 1.01 16 45 H 0.07 1.00 7.22 -51.93 -0.38 0.62 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.12 2.27 7.84 -52.49 -0.41 1.86 16 48 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 49 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 50 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.11 2.11 7.00 -52.48 -0.37 1.75 16 LS Contribution 378.57 15.07 5.71 5.71 Total: -1.00 -31.42 378.57 -10.43 -41.85 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.32 Total: 7.84 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.87 Total: -18.62 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: -0.36 Total: -43.83 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.05 Total: -10.85 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.64 Total: 17.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.42 -10.43 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576442879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.755 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds