Wall clock time and date at job start Tue Mar 31 2020 16:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53479 * 1 3 3 C 1.53109 * 107.19247 * 2 1 4 4 C 1.54702 * 107.56050 * 243.87741 * 2 1 3 5 5 C 1.54780 * 110.31446 * 250.91641 * 4 2 1 6 6 N 1.43825 * 110.18474 * 279.74362 * 5 4 2 7 7 C 1.45359 * 107.08291 * 95.86897 * 6 5 4 8 8 C 1.46000 * 116.69027 * 286.48195 * 7 6 5 9 9 N 1.43347 * 107.47466 * 116.63098 * 2 1 3 10 10 C 1.35546 * 119.17470 * 359.69089 * 9 2 1 11 11 O 1.21276 * 119.99977 * 354.63848 * 10 9 2 12 12 C 1.50699 * 119.99731 * 174.64033 * 10 9 2 13 13 C 1.53002 * 109.46799 * 180.02562 * 12 10 9 14 14 H 1.08994 * 109.46754 * 306.00369 * 13 12 10 15 15 C 1.50698 * 109.47045 * 66.00883 * 13 12 10 16 16 H 1.07996 * 120.00323 * 35.01130 * 15 13 12 17 17 C 1.37887 * 119.99367 * 215.01150 * 15 13 12 18 18 N 1.31516 * 119.99623 * 184.95730 * 17 15 13 19 19 Si 1.86792 * 120.00205 * 4.96476 * 17 15 13 20 20 H 1.48507 * 109.47309 * 94.83152 * 19 17 15 21 21 H 1.48496 * 109.47066 * 214.83535 * 19 17 15 22 22 H 1.48500 * 109.47368 * 334.83423 * 19 17 15 23 23 C 1.50705 * 109.46832 * 186.00492 * 13 12 10 24 24 C 1.38234 * 119.99934 * 294.68234 * 23 13 12 25 25 C 1.38234 * 119.99352 * 179.78984 * 24 23 13 26 26 C 1.38237 * 120.00479 * 0.43835 * 25 24 23 27 27 C 1.38235 * 119.99719 * 359.81317 * 26 25 24 28 28 C 1.38228 * 119.99878 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47026 * 306.60091 * 1 2 3 30 30 H 1.09000 * 109.47445 * 66.59926 * 1 2 3 31 31 H 1.09000 * 109.47486 * 186.59915 * 1 2 3 32 32 H 1.09003 * 109.47162 * 175.85261 * 3 2 1 33 33 H 1.09000 * 109.47236 * 295.85220 * 3 2 1 34 34 H 1.09006 * 109.46818 * 55.85564 * 3 2 1 35 35 H 1.09250 * 109.30286 * 10.97209 * 4 2 1 36 36 H 1.09092 * 109.56849 * 130.33966 * 4 2 1 37 37 H 1.09289 * 109.07755 * 160.06309 * 5 4 2 38 38 H 1.08810 * 109.76566 * 40.86259 * 5 4 2 39 39 H 1.00889 * 111.24483 * 333.65938 * 6 5 4 40 40 H 1.09490 * 108.45928 * 49.30886 * 7 6 5 41 41 H 1.09692 * 108.06988 * 164.49782 * 7 6 5 42 42 H 1.09860 * 109.35906 * 185.98783 * 8 7 6 43 43 H 1.09306 * 109.81240 * 304.27220 * 8 7 6 44 44 H 1.09002 * 109.47325 * 300.00068 * 12 10 9 45 45 H 1.08997 * 109.47299 * 59.99566 * 12 10 9 46 46 H 0.96995 * 120.00004 * 180.02562 * 18 17 15 47 47 H 1.07996 * 120.00467 * 359.97438 * 24 23 13 48 48 H 1.08006 * 119.99599 * 180.27139 * 25 24 23 49 49 H 1.08001 * 120.00186 * 179.83859 * 26 25 24 50 50 H 1.07999 * 119.99711 * 180.02562 * 27 26 25 51 51 H 1.08004 * 119.99655 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5348 0.0000 0.0000 3 6 1.9873 1.4627 0.0000 4 6 2.0015 -0.6494 -1.3243 5 6 2.6161 -2.0436 -1.0517 6 7 3.9720 -1.9069 -0.5918 7 6 3.9366 -1.9502 0.8607 8 6 3.4162 -0.7670 1.5395 9 7 1.9652 -0.6129 1.2223 10 6 1.0348 -1.0490 2.1062 11 8 -0.1413 -0.8321 1.9050 12 6 1.4618 -1.8033 3.3389 13 6 0.2269 -2.1782 4.1607 14 1 -0.3598 -1.2824 4.3639 15 6 -0.6112 -3.1631 3.3872 16 1 -0.1351 -3.8998 2.7572 17 6 -1.9861 -3.1236 3.4837 18 7 -2.7138 -4.0425 2.8872 19 14 -2.8151 -1.7650 4.4615 20 1 -3.1983 -0.6597 3.5467 21 1 -4.0303 -2.3029 5.1242 22 1 -1.8758 -1.2522 5.4910 23 6 0.6602 -2.8010 5.4629 24 6 1.3258 -4.0126 5.4618 25 6 1.7271 -4.5816 6.6559 26 6 1.4547 -3.9437 7.8517 27 6 0.7845 -2.7347 7.8530 28 6 0.3872 -2.1634 6.6586 29 1 -0.3633 0.6128 0.8250 30 1 -0.3634 0.4081 -0.9431 31 1 -0.3634 -1.0208 0.1181 32 1 3.0739 1.5068 0.0743 33 1 1.6667 1.9422 -0.9248 34 1 1.5437 1.9802 0.8506 35 1 1.1454 -0.7593 -1.9940 36 1 2.7462 -0.0109 -1.8018 37 1 2.6103 -2.6238 -1.9779 38 1 2.0233 -2.5674 -0.3046 39 1 4.3877 -1.0514 -0.9282 40 1 3.3414 -2.8164 1.1673 41 1 4.9574 -2.1282 1.2208 42 1 3.5427 -0.8844 2.6245 43 1 3.9796 0.1165 1.2283 44 1 1.9912 -2.7098 3.0451 45 1 2.1212 -1.1759 3.9386 46 1 -3.6810 -4.0145 2.9548 47 1 1.5350 -4.5130 4.5279 48 1 2.2510 -5.5261 6.6549 49 1 1.7659 -4.3896 8.7848 50 1 0.5721 -2.2361 8.7871 51 1 -0.1368 -1.2190 6.6597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576442879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:05 Heat of formation + Delta-G solvation = 12.071994 kcal Electronic energy + Delta-G solvation = -30531.496890 eV Core-core repulsion = 26817.281694 eV Total energy + Delta-G solvation = -3714.215196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99792 -40.10114 -38.97072 -36.61283 -35.57975 -34.91167 -33.62683 -31.60484 -30.81202 -30.01048 -28.37917 -28.01238 -27.74959 -24.52073 -23.99189 -23.32982 -22.89118 -22.24185 -20.83710 -19.35112 -19.04673 -18.18692 -17.49752 -16.95679 -16.70630 -16.50926 -15.95585 -15.83777 -15.74834 -15.43091 -15.16520 -14.91573 -14.64633 -14.55318 -14.32222 -14.10143 -14.01213 -13.73730 -13.60311 -13.43255 -13.30405 -13.08678 -12.87434 -12.81873 -12.63342 -12.33610 -12.19646 -12.14723 -12.03546 -11.90065 -11.88287 -11.74420 -11.50070 -11.39845 -11.02261 -10.61934 -9.68725 -9.62383 -9.54629 -9.28662 -9.20517 -8.23720 -6.19438 0.68372 0.73346 1.27779 1.35071 1.38026 1.88717 2.09477 2.38838 3.07695 3.23222 3.47022 3.60755 3.81408 3.88776 4.00606 4.08949 4.14489 4.24326 4.30152 4.31290 4.34170 4.42080 4.45856 4.48427 4.57917 4.63320 4.63962 4.70745 4.78182 4.85444 4.86112 4.89864 4.96028 4.98344 5.06704 5.10005 5.11777 5.17830 5.20724 5.34516 5.37883 5.40939 5.49926 5.67817 5.76985 5.82608 5.94378 6.02647 6.09580 6.32490 6.36149 6.52098 6.60902 6.79732 7.44196 7.55544 8.93361 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.004880 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.321264 B = 5736.739712 C = 6869.376792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.162 3.838 3 C -0.148 4.148 4 C -0.144 4.144 5 C 0.054 3.946 6 N -0.652 5.652 7 C 0.026 3.974 8 C 0.080 3.920 9 N -0.606 5.606 10 C 0.505 3.495 11 O -0.537 6.537 12 C -0.108 4.108 13 C 0.056 3.944 14 H 0.034 0.966 15 C -0.458 4.458 16 H 0.030 0.970 17 C 0.024 3.976 18 N -0.953 5.953 19 Si 0.923 3.077 20 H -0.292 1.292 21 H -0.298 1.298 22 H -0.229 1.229 23 C -0.063 4.063 24 C -0.118 4.118 25 C -0.125 4.125 26 C -0.140 4.140 27 C -0.124 4.124 28 C -0.153 4.153 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.352 0.648 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.257 0.743 47 H 0.106 0.894 48 H 0.138 0.862 49 H 0.146 0.854 50 H 0.140 0.860 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.491 9.204 -0.295 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.184 4.184 5 C -0.077 4.077 6 N -0.282 5.282 7 C -0.105 4.105 8 C -0.042 4.042 9 N -0.341 5.341 10 C 0.295 3.705 11 O -0.413 6.413 12 C -0.148 4.148 13 C 0.037 3.963 14 H 0.052 0.948 15 C -0.496 4.496 16 H 0.049 0.951 17 C -0.172 4.172 18 N -0.595 5.595 19 Si 0.750 3.250 20 H -0.219 1.219 21 H -0.226 1.226 22 H -0.152 1.152 23 C -0.063 4.063 24 C -0.136 4.136 25 C -0.143 4.143 26 C -0.157 4.157 27 C -0.141 4.141 28 C -0.171 4.171 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.172 0.828 40 H 0.066 0.934 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.118 0.882 46 H 0.066 0.934 47 H 0.124 0.876 48 H 0.156 0.844 49 H 0.164 0.836 50 H 0.158 0.842 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.891 8.580 -0.516 19.849 hybrid contribution -2.054 0.932 0.143 2.260 sum 15.837 9.513 -0.373 18.478 Atomic orbital electron populations 1.22551 0.95022 1.01364 0.98443 1.20251 0.93836 0.93180 0.85168 1.22324 1.02172 0.94035 1.02116 1.23437 1.02270 0.97302 0.95425 1.21827 0.89513 0.95999 1.00313 1.60911 1.16887 1.43010 1.07343 1.21065 1.03031 0.97524 0.88901 1.21806 0.79022 1.00496 1.02879 1.48070 1.06871 1.61424 1.17737 1.21205 0.85589 0.78422 0.85238 1.90863 1.19951 1.55592 1.74884 1.21626 0.99106 0.99933 0.94151 1.18057 0.93337 0.94979 0.89938 0.94785 1.20743 0.90539 1.14056 1.24239 0.95144 1.25580 0.98408 0.96881 0.96289 1.70038 1.05541 1.36292 1.47609 0.86113 0.78301 0.80529 0.80046 1.21921 1.22553 1.15202 1.20496 0.94797 0.95427 0.95594 1.20974 0.99133 0.95185 0.98307 1.21387 1.00303 1.00291 0.92292 1.21330 1.00185 0.95702 0.98512 1.21332 0.98657 0.96550 0.97608 1.21243 1.02131 1.00697 0.93041 0.93395 0.94807 0.94823 0.90364 0.90766 0.94102 0.91239 0.88281 0.91308 0.94383 0.82781 0.93445 0.87817 0.87981 0.87745 0.89539 0.88207 0.93417 0.87627 0.84420 0.83587 0.84226 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 6.36 72.14 0.46 -3.79 16 2 C 0.16 4.31 1.02 4.96 0.01 4.31 16 3 C -0.15 -3.01 8.00 72.02 0.58 -2.43 16 4 C -0.14 -3.16 5.35 31.78 0.17 -2.99 16 5 C 0.05 1.33 6.02 87.48 0.53 1.85 16 6 N -0.65 -12.47 7.07 -531.44 -3.76 -16.23 16 7 C 0.03 0.49 5.51 84.44 0.47 0.95 16 8 C 0.08 1.48 5.54 83.68 0.46 1.95 16 9 N -0.61 -17.05 1.80 -779.37 -1.40 -18.45 16 10 C 0.51 19.48 7.23 87.54 0.63 20.12 16 11 O -0.54 -26.11 9.73 -3.02 -0.03 -26.14 16 12 C -0.11 -3.93 3.54 29.85 0.11 -3.83 16 13 C 0.06 2.56 1.24 -12.28 -0.02 2.54 16 14 H 0.03 1.66 4.58 -2.39 -0.01 1.65 16 15 C -0.46 -26.01 6.92 25.60 0.18 -25.83 16 16 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 17 C 0.02 1.50 5.47 84.66 0.46 1.96 16 18 N -0.95 -62.87 13.96 21.45 0.30 -62.57 16 19 Si 0.92 48.85 27.31 68.60 1.87 50.72 16 20 H -0.29 -16.05 7.11 99.48 0.71 -15.34 16 21 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 22 H -0.23 -10.83 4.86 99.48 0.48 -10.35 16 23 C -0.06 -2.55 4.77 -19.86 -0.09 -2.65 16 24 C -0.12 -4.46 8.90 22.27 0.20 -4.26 16 25 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 26 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 27 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 28 C -0.15 -5.64 9.19 22.27 0.20 -5.43 16 29 H 0.05 1.97 6.43 -2.41 -0.02 1.95 16 30 H 0.03 1.07 7.85 -2.39 -0.02 1.06 16 31 H 0.03 1.53 6.41 -2.51 -0.02 1.52 16 32 H 0.08 1.15 6.88 -2.39 -0.02 1.14 16 33 H 0.07 1.31 8.11 -2.39 -0.02 1.29 16 34 H 0.04 0.97 8.08 -2.38 -0.02 0.95 16 35 H 0.07 1.65 7.40 -2.25 -0.02 1.63 16 36 H 0.10 1.53 7.19 -2.34 -0.02 1.51 16 37 H 0.07 1.64 8.17 -2.23 -0.02 1.63 16 38 H 0.04 1.24 6.59 -2.49 -0.02 1.23 16 39 H 0.35 4.94 8.07 -89.70 -0.72 4.21 16 40 H 0.05 1.22 7.15 -2.13 -0.02 1.21 16 41 H 0.10 1.47 8.19 -2.02 -0.02 1.45 16 42 H 0.10 1.72 6.25 -1.93 -0.01 1.71 16 43 H 0.10 1.33 6.86 -2.22 -0.02 1.31 16 44 H 0.09 3.05 7.62 -2.39 -0.02 3.04 16 45 H 0.10 2.91 7.22 -2.39 -0.02 2.89 16 46 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 47 H 0.11 4.17 7.84 -2.91 -0.02 4.14 16 48 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 49 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 50 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 51 H 0.11 3.96 7.00 -2.91 -0.02 3.94 16 Total: -1.00 -77.19 378.57 1.98 -75.21 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.01 Total: 25.74 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 5.01 Total: -28.28 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -4.86 Total: -97.25 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.03 Total: -26.14 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.87 Total: 50.72 kcal Total: -77.19 1.98 -75.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576442879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.278 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds