Wall clock time and date at job start Tue Mar 31 2020 16:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 108.82097 * 2 1 4 4 C 1.54066 * 108.92071 * 118.60874 * 2 1 3 5 5 N 1.44271 * 111.97673 * 79.63975 * 4 2 1 6 6 C 1.47797 * 109.45351 * 96.44577 * 5 4 2 7 7 C 1.45870 * 112.92644 * 276.72684 * 6 5 4 8 8 C 1.54512 * 111.57961 * 61.32535 * 7 6 5 9 9 H 1.08995 * 109.57191 * 42.76415 * 8 7 6 10 10 N 1.46503 * 109.56469 * 163.01342 * 8 7 6 11 11 C 1.34776 * 119.99857 * 274.99293 * 10 8 7 12 12 O 1.21279 * 120.00395 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00131 * 180.02562 * 11 10 8 14 14 C 1.50698 * 109.47493 * 180.02562 * 13 11 10 15 15 C 1.37639 * 120.12986 * 265.00204 * 14 13 11 16 16 C 1.38608 * 120.24862 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.50278 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.24864 * 359.97438 * 17 16 15 19 19 C 1.40697 * 120.12744 * 84.97565 * 14 13 11 20 20 C 1.41393 * 120.24189 * 0.02562 * 19 14 13 21 21 H 1.08002 * 120.00485 * 334.03826 * 20 19 14 22 22 C 1.39945 * 119.99979 * 154.03743 * 20 19 14 23 23 N 1.30827 * 120.00100 * 343.67842 * 22 20 19 24 24 Si 1.86800 * 120.00403 * 163.67546 * 22 20 19 25 25 H 1.48500 * 109.47167 * 59.99851 * 24 22 20 26 26 H 1.48500 * 109.47488 * 180.02562 * 24 22 20 27 27 H 1.48511 * 109.47104 * 300.00223 * 24 22 20 28 28 C 1.50460 * 108.85644 * 282.82167 * 8 7 6 29 29 H 1.08992 * 109.47263 * 301.38803 * 1 2 3 30 30 H 1.09000 * 109.46537 * 61.39440 * 1 2 3 31 31 H 1.08995 * 109.46684 * 181.38561 * 1 2 3 32 32 H 1.08999 * 109.47268 * 178.61541 * 3 2 1 33 33 H 1.09009 * 109.46837 * 298.61006 * 3 2 1 34 34 H 1.08999 * 109.47523 * 58.60494 * 3 2 1 35 35 H 1.09001 * 108.97783 * 319.00239 * 4 2 1 36 36 H 1.08994 * 108.98740 * 200.28543 * 4 2 1 37 37 H 1.00906 * 110.99848 * 333.57834 * 5 4 2 38 38 H 1.09009 * 108.78839 * 155.84315 * 6 5 4 39 39 H 1.08990 * 108.70770 * 37.55893 * 6 5 4 40 40 H 1.09001 * 109.05518 * 300.78647 * 7 6 5 41 41 H 1.08998 * 109.05744 * 181.86829 * 7 6 5 42 42 H 0.96998 * 119.99845 * 95.00575 * 10 8 7 43 43 H 1.09008 * 109.46968 * 60.00127 * 13 11 10 44 44 H 1.09004 * 109.47101 * 300.00778 * 13 11 10 45 45 H 1.08003 * 119.87375 * 359.97438 * 15 14 13 46 46 H 1.08008 * 119.74747 * 179.97438 * 16 15 14 47 47 H 1.08000 * 119.87603 * 179.72103 * 17 16 15 48 48 H 1.08003 * 120.12661 * 179.97438 * 18 17 16 49 49 H 0.97004 * 120.00060 * 180.02562 * 23 22 20 50 50 H 1.09007 * 108.76736 * 213.06928 * 28 8 7 51 51 H 1.08998 * 108.77453 * 331.23684 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0236 1.4482 0.0000 4 6 2.0296 -0.6978 1.2795 5 7 1.9770 -2.1351 1.1662 6 6 3.3047 -2.6462 0.7656 7 6 3.5275 -2.5818 -0.6746 8 6 3.4700 -1.1278 -1.1941 9 1 4.0070 -0.4733 -0.5077 10 7 4.0845 -1.0566 -2.5221 11 6 5.4188 -0.9079 -2.6401 12 8 6.1109 -0.8335 -1.6470 13 6 6.0509 -0.8342 -4.0061 14 6 7.5419 -0.6693 -3.8616 15 6 8.1047 0.5863 -3.8953 16 6 9.4757 0.7408 -3.7621 17 6 10.2953 -0.3647 -3.5931 18 6 9.7544 -1.6293 -3.5552 19 6 8.3639 -1.7984 -3.6911 20 6 7.7970 -3.0931 -3.6548 21 1 6.7723 -3.2254 -3.3403 22 6 8.5636 -4.2034 -4.0265 23 7 9.6724 -4.0366 -4.7006 24 14 8.0039 -5.9234 -3.5602 25 1 6.6719 -6.1902 -4.1601 26 1 8.9838 -6.9174 -4.0673 27 1 7.9113 -6.0301 -2.0819 28 6 2.0304 -0.6991 -1.2812 29 1 -0.3633 0.5352 0.8772 30 1 -0.3632 0.4920 -0.9023 31 1 -0.3632 -1.0273 0.0248 32 1 3.1132 1.4607 0.0248 33 1 1.6750 1.9509 -0.9023 34 1 1.6341 1.9649 0.8772 35 1 1.4086 -0.3855 2.1191 36 1 3.0590 -0.3947 1.4699 37 1 1.2664 -2.4203 0.5090 38 1 3.3938 -3.6835 1.0886 39 1 4.0721 -2.0560 1.2663 40 1 2.7620 -3.1708 -1.1798 41 1 4.5068 -3.0027 -0.9024 42 1 3.5310 -1.1164 -3.3164 43 1 5.6419 0.0173 -4.5502 44 1 5.8386 -1.7518 -4.5548 45 1 7.4756 1.4544 -4.0261 46 1 9.9087 1.7298 -3.7902 47 1 11.3627 -0.2330 -3.4948 48 1 10.3948 -2.4891 -3.4239 49 1 10.2036 -4.8062 -4.9585 50 1 1.9188 -0.0134 -2.1212 51 1 1.4130 -1.5784 -1.4648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576478823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:19 Heat of formation + Delta-G solvation = -35.933919 kcal Electronic energy + Delta-G solvation = -29353.991743 eV Core-core repulsion = 25637.694855 eV Total energy + Delta-G solvation = -3716.296889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.41882 -38.81641 -37.26611 -35.11212 -34.57626 -33.59841 -31.89652 -30.80658 -29.42605 -28.36044 -27.56278 -26.67021 -25.21615 -24.93665 -22.93142 -21.30459 -20.90808 -20.35988 -19.51337 -18.73441 -17.15882 -16.50490 -16.36434 -15.88564 -15.39656 -15.22864 -14.85929 -14.60220 -14.39411 -14.25756 -13.64677 -13.44562 -13.31765 -13.19468 -13.06727 -12.78356 -12.60588 -12.56107 -12.31602 -12.02324 -11.80141 -11.66605 -11.54767 -11.25009 -11.13989 -11.11512 -10.98203 -10.96323 -10.81473 -10.72096 -10.66598 -10.46744 -10.39051 -9.46374 -9.35806 -9.15192 -9.12089 -8.74529 -8.49436 -7.29005 -7.26556 -6.71700 -4.32303 2.81506 2.99175 3.06668 3.09750 3.29357 3.35128 3.61875 3.94567 4.23069 4.39785 4.49835 4.54703 4.68332 4.87540 4.98302 5.06822 5.18616 5.30419 5.39859 5.45413 5.50453 5.53345 5.58826 5.64831 5.70356 5.75532 5.80075 5.85480 5.94470 5.97906 6.02382 6.05327 6.08577 6.11314 6.21321 6.30508 6.31151 6.45278 6.53179 6.82136 6.85346 6.93599 7.10669 7.28067 7.31815 7.44662 7.66282 7.90851 7.98411 8.09754 8.15437 8.33845 8.66897 8.89105 8.93902 9.03972 10.22634 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003652 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.207510 B = 7665.422741 C = 9099.840056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.142 4.142 4 C 0.060 3.940 5 N -0.671 5.671 6 C 0.052 3.948 7 C -0.163 4.163 8 C 0.149 3.851 9 H 0.087 0.913 10 N -0.741 5.741 11 C 0.515 3.485 12 O -0.519 6.519 13 C -0.071 4.071 14 C -0.180 4.180 15 C -0.082 4.082 16 C -0.239 4.239 17 C -0.107 4.107 18 C -0.160 4.160 19 C 0.130 3.870 20 C -0.457 4.457 21 H 0.073 0.927 22 C 0.078 3.922 23 N -0.796 5.796 24 Si 0.902 3.098 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.264 1.264 28 C -0.120 4.120 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.338 0.662 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.394 0.606 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.280 0.720 50 H 0.071 0.929 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.968 4.039 5.225 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 C -0.200 4.200 4 C -0.071 4.071 5 N -0.300 5.300 6 C -0.078 4.078 7 C -0.204 4.204 8 C 0.044 3.956 9 H 0.105 0.895 10 N -0.395 5.395 11 C 0.303 3.697 12 O -0.393 6.393 13 C -0.111 4.111 14 C -0.182 4.182 15 C -0.100 4.100 16 C -0.259 4.259 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.128 3.872 20 C -0.486 4.486 21 H 0.091 0.909 22 C -0.140 4.140 23 N -0.422 5.422 24 Si 0.727 3.273 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.189 1.189 28 C -0.159 4.159 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.227 0.773 43 H 0.092 0.908 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.140 3.824 6.537 17.829 hybrid contribution -0.383 -0.587 -1.305 1.481 sum -16.523 3.237 5.233 17.632 Atomic orbital electron populations 1.21896 0.94201 1.01731 1.01814 1.21628 0.95984 0.96439 0.95320 1.21911 1.01536 0.94809 1.01716 1.22044 1.01659 0.87774 0.95579 1.61122 1.06261 1.09717 1.52855 1.20943 0.90946 1.01621 0.94253 1.21662 1.03775 0.97316 0.97602 1.20570 0.92846 0.96225 0.85960 0.89516 1.46270 1.08171 1.77328 1.07722 1.21229 0.80886 0.74746 0.92844 1.90676 1.61523 1.47441 1.39612 1.20273 0.95031 1.02867 0.92953 1.19044 0.91757 0.93639 1.13728 1.20291 0.94388 0.94995 1.00325 1.20299 0.93669 0.96515 1.15394 1.20672 0.97133 0.93669 1.01097 1.21292 0.95848 0.95407 1.05340 1.17317 0.91398 0.91727 0.86806 1.19422 0.98975 0.90713 1.39538 0.90899 1.25866 0.94234 1.01340 0.92534 1.69813 1.12721 1.33048 1.26577 0.86471 0.79336 0.81290 0.80241 1.19123 1.20323 1.18874 1.21790 0.95394 1.00727 0.97943 0.92371 0.92727 0.92638 0.92329 0.92631 0.92528 0.91068 0.91413 0.84337 0.90802 0.90989 0.92103 0.90138 0.77295 0.90767 0.88666 0.89856 0.89710 0.89608 0.86575 0.90931 0.91011 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.13 37.16 0.30 -0.68 16 2 C -0.09 -0.78 0.52 -153.28 -0.08 -0.86 16 3 C -0.14 -1.26 8.14 37.16 0.30 -0.96 16 4 C 0.06 0.57 4.77 -4.67 -0.02 0.55 16 5 N -0.67 -6.76 6.91 -118.15 -0.82 -7.58 16 6 C 0.05 0.61 5.87 -6.70 -0.04 0.57 16 7 C -0.16 -2.08 4.97 -29.31 -0.15 -2.23 16 8 C 0.15 1.88 2.07 -68.40 -0.14 1.74 16 9 H 0.09 1.31 5.87 -51.93 -0.30 1.01 16 10 N -0.74 -10.41 4.99 -54.27 -0.27 -10.68 16 11 C 0.52 9.81 7.36 -10.99 -0.08 9.73 16 12 O -0.52 -12.20 15.70 5.56 0.09 -12.11 16 13 C -0.07 -1.39 5.18 -29.04 -0.15 -1.54 16 14 C -0.18 -4.34 4.43 -103.91 -0.46 -4.80 16 15 C -0.08 -1.90 9.66 -39.66 -0.38 -2.28 16 16 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 17 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 18 C -0.16 -4.30 8.69 -38.87 -0.34 -4.64 16 19 C 0.13 3.48 5.56 -106.83 -0.59 2.89 16 20 C -0.46 -12.02 8.14 -37.74 -0.31 -12.33 16 21 H 0.07 1.86 6.68 -52.49 -0.35 1.51 16 22 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 23 N -0.80 -20.65 10.97 55.55 0.61 -20.04 16 24 Si 0.90 18.93 29.59 -169.99 -5.03 13.90 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 C -0.12 -1.12 3.66 -27.32 -0.10 -1.22 16 29 H 0.06 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 7.48 -51.93 -0.39 -0.01 16 32 H 0.06 0.62 7.41 -51.93 -0.38 0.23 16 33 H 0.05 0.47 8.06 -51.92 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.64 7.96 -51.93 -0.41 0.23 16 36 H 0.07 0.75 6.33 -51.93 -0.33 0.42 16 37 H 0.34 3.06 6.64 -39.29 -0.26 2.80 16 38 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.07 0.94 7.23 -51.93 -0.38 0.56 16 40 H 0.06 0.69 7.59 -51.93 -0.39 0.29 16 41 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 42 H 0.39 4.37 8.52 -40.82 -0.35 4.03 16 43 H 0.07 1.21 8.05 -51.92 -0.42 0.79 16 44 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 45 H 0.08 1.71 8.06 -52.48 -0.42 1.28 16 46 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 47 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 48 H 0.12 3.21 6.22 -52.48 -0.33 2.89 16 49 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 50 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 51 H 0.06 0.55 6.63 -51.93 -0.34 0.20 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -30.03 390.35 -10.99 -41.02 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -8.33 Total: 12.87 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -3.12 Total: -23.27 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.48 Total: -38.30 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.03 -10.99 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576478823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.087 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds