Wall clock time and date at job start Tue Mar 31 2020 16:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 108.82097 * 2 1 4 4 C 1.54066 * 108.92071 * 118.60874 * 2 1 3 5 5 N 1.44271 * 111.97673 * 79.63975 * 4 2 1 6 6 C 1.47797 * 109.45351 * 96.44577 * 5 4 2 7 7 C 1.45870 * 112.92644 * 276.72684 * 6 5 4 8 8 C 1.54512 * 111.57961 * 61.32535 * 7 6 5 9 9 H 1.08995 * 109.57191 * 42.76415 * 8 7 6 10 10 N 1.46503 * 109.56469 * 163.01342 * 8 7 6 11 11 C 1.34776 * 119.99857 * 274.99293 * 10 8 7 12 12 O 1.21279 * 120.00395 * 0.02562 * 11 10 8 13 13 C 1.50701 * 120.00131 * 180.02562 * 11 10 8 14 14 C 1.50698 * 109.47493 * 180.02562 * 13 11 10 15 15 C 1.37639 * 120.12986 * 265.00204 * 14 13 11 16 16 C 1.38608 * 120.24862 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.50278 * 359.97438 * 16 15 14 18 18 C 1.37596 * 120.24864 * 359.97438 * 17 16 15 19 19 C 1.40697 * 120.12744 * 84.97565 * 14 13 11 20 20 C 1.41393 * 120.24189 * 0.02562 * 19 14 13 21 21 H 1.08002 * 120.00485 * 334.03826 * 20 19 14 22 22 C 1.39945 * 119.99979 * 154.03743 * 20 19 14 23 23 N 1.30827 * 120.00100 * 343.67842 * 22 20 19 24 24 Si 1.86800 * 120.00403 * 163.67546 * 22 20 19 25 25 H 1.48500 * 109.47167 * 59.99851 * 24 22 20 26 26 H 1.48500 * 109.47488 * 180.02562 * 24 22 20 27 27 H 1.48511 * 109.47104 * 300.00223 * 24 22 20 28 28 C 1.50460 * 108.85644 * 282.82167 * 8 7 6 29 29 H 1.08992 * 109.47263 * 301.38803 * 1 2 3 30 30 H 1.09000 * 109.46537 * 61.39440 * 1 2 3 31 31 H 1.08995 * 109.46684 * 181.38561 * 1 2 3 32 32 H 1.08999 * 109.47268 * 178.61541 * 3 2 1 33 33 H 1.09009 * 109.46837 * 298.61006 * 3 2 1 34 34 H 1.08999 * 109.47523 * 58.60494 * 3 2 1 35 35 H 1.09001 * 108.97783 * 319.00239 * 4 2 1 36 36 H 1.08994 * 108.98740 * 200.28543 * 4 2 1 37 37 H 1.00906 * 110.99848 * 333.57834 * 5 4 2 38 38 H 1.09009 * 108.78839 * 155.84315 * 6 5 4 39 39 H 1.08990 * 108.70770 * 37.55893 * 6 5 4 40 40 H 1.09001 * 109.05518 * 300.78647 * 7 6 5 41 41 H 1.08998 * 109.05744 * 181.86829 * 7 6 5 42 42 H 0.96998 * 119.99845 * 95.00575 * 10 8 7 43 43 H 1.09008 * 109.46968 * 60.00127 * 13 11 10 44 44 H 1.09004 * 109.47101 * 300.00778 * 13 11 10 45 45 H 1.08003 * 119.87375 * 359.97438 * 15 14 13 46 46 H 1.08008 * 119.74747 * 179.97438 * 16 15 14 47 47 H 1.08000 * 119.87603 * 179.72103 * 17 16 15 48 48 H 1.08003 * 120.12661 * 179.97438 * 18 17 16 49 49 H 0.97004 * 120.00060 * 180.02562 * 23 22 20 50 50 H 1.09007 * 108.76736 * 213.06928 * 28 8 7 51 51 H 1.08998 * 108.77453 * 331.23684 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0236 1.4482 0.0000 4 6 2.0296 -0.6978 1.2795 5 7 1.9770 -2.1351 1.1662 6 6 3.3047 -2.6462 0.7656 7 6 3.5275 -2.5818 -0.6746 8 6 3.4700 -1.1278 -1.1941 9 1 4.0070 -0.4733 -0.5077 10 7 4.0845 -1.0566 -2.5221 11 6 5.4188 -0.9079 -2.6401 12 8 6.1109 -0.8335 -1.6470 13 6 6.0509 -0.8342 -4.0061 14 6 7.5419 -0.6693 -3.8616 15 6 8.1047 0.5863 -3.8953 16 6 9.4757 0.7408 -3.7621 17 6 10.2953 -0.3647 -3.5931 18 6 9.7544 -1.6293 -3.5552 19 6 8.3639 -1.7984 -3.6911 20 6 7.7970 -3.0931 -3.6548 21 1 6.7723 -3.2254 -3.3403 22 6 8.5636 -4.2034 -4.0265 23 7 9.6724 -4.0366 -4.7006 24 14 8.0039 -5.9234 -3.5602 25 1 6.6719 -6.1902 -4.1601 26 1 8.9838 -6.9174 -4.0673 27 1 7.9113 -6.0301 -2.0819 28 6 2.0304 -0.6991 -1.2812 29 1 -0.3633 0.5352 0.8772 30 1 -0.3632 0.4920 -0.9023 31 1 -0.3632 -1.0273 0.0248 32 1 3.1132 1.4607 0.0248 33 1 1.6750 1.9509 -0.9023 34 1 1.6341 1.9649 0.8772 35 1 1.4086 -0.3855 2.1191 36 1 3.0590 -0.3947 1.4699 37 1 1.2664 -2.4203 0.5090 38 1 3.3938 -3.6835 1.0886 39 1 4.0721 -2.0560 1.2663 40 1 2.7620 -3.1708 -1.1798 41 1 4.5068 -3.0027 -0.9024 42 1 3.5310 -1.1164 -3.3164 43 1 5.6419 0.0173 -4.5502 44 1 5.8386 -1.7518 -4.5548 45 1 7.4756 1.4544 -4.0261 46 1 9.9087 1.7298 -3.7902 47 1 11.3627 -0.2330 -3.4948 48 1 10.3948 -2.4891 -3.4239 49 1 10.2036 -4.8062 -4.9585 50 1 1.9188 -0.0134 -2.1212 51 1 1.4130 -1.5784 -1.4648 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576478823.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:18 Heat of formation + Delta-G solvation = -54.500733 kcal Electronic energy + Delta-G solvation = -29354.796861 eV Core-core repulsion = 25637.694855 eV Total energy + Delta-G solvation = -3717.102006 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47866 -40.23195 -39.00934 -36.07604 -35.67906 -35.50492 -33.55044 -32.06651 -31.33591 -29.34931 -28.27848 -28.16705 -26.85132 -26.03235 -23.92989 -22.83505 -22.50161 -21.72856 -21.06423 -19.67041 -19.06357 -17.81597 -17.56128 -17.19587 -16.87370 -16.34023 -16.25489 -15.99786 -15.58449 -15.49919 -15.11477 -14.97207 -14.65411 -14.37670 -14.09435 -14.03175 -13.96035 -13.53037 -13.37342 -13.33534 -13.17441 -12.92859 -12.79547 -12.77087 -12.67466 -12.51485 -12.43128 -12.13790 -12.06032 -11.90085 -11.74498 -11.56232 -11.33648 -11.31461 -11.21726 -11.03916 -10.69897 -9.99961 -9.37664 -9.23579 -9.16437 -8.60417 -6.30097 0.99190 1.12654 1.33768 1.43879 1.52640 1.85006 2.18174 2.34840 2.78015 3.36181 3.55572 3.67286 3.74316 3.83222 3.99953 4.08983 4.13269 4.19031 4.39113 4.40564 4.43600 4.56042 4.57739 4.60597 4.62913 4.69510 4.72130 4.80002 4.82627 4.91138 4.94575 5.02240 5.04327 5.08322 5.10023 5.12642 5.19302 5.20222 5.32642 5.34759 5.35769 5.46887 5.54176 5.64801 5.76860 6.03077 6.03966 6.15879 6.20596 6.41349 6.52430 6.68004 6.75391 6.98603 7.10815 7.47928 8.36116 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003652 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.207510 B = 7665.422741 C = 9099.840056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 C -0.141 4.141 4 C 0.060 3.940 5 N -0.665 5.665 6 C 0.059 3.941 7 C -0.156 4.156 8 C 0.151 3.849 9 H 0.058 0.942 10 N -0.720 5.720 11 C 0.518 3.482 12 O -0.573 6.573 13 C -0.070 4.070 14 C -0.186 4.186 15 C -0.092 4.092 16 C -0.243 4.243 17 C -0.118 4.118 18 C -0.195 4.195 19 C 0.097 3.903 20 C -0.482 4.482 21 H 0.071 0.929 22 C 0.037 3.963 23 N -0.827 5.827 24 Si 0.969 3.031 25 H -0.252 1.252 26 H -0.267 1.267 27 H -0.272 1.272 28 C -0.114 4.114 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.349 0.651 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.412 0.588 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.286 0.714 50 H 0.083 0.917 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 4.445 4.759 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 C -0.199 4.199 4 C -0.070 4.070 5 N -0.294 5.294 6 C -0.071 4.071 7 C -0.196 4.196 8 C 0.046 3.954 9 H 0.077 0.923 10 N -0.373 5.373 11 C 0.306 3.694 12 O -0.451 6.451 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.110 4.110 16 C -0.262 4.262 17 C -0.136 4.136 18 C -0.215 4.215 19 C 0.095 3.905 20 C -0.512 4.512 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.453 5.453 24 Si 0.790 3.210 25 H -0.176 1.176 26 H -0.191 1.191 27 H -0.197 1.197 28 C -0.152 4.152 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.168 0.832 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.058 0.942 42 H 0.249 0.751 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 50 H 0.101 0.899 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.515 4.240 6.036 20.862 hybrid contribution 0.655 -0.586 -1.141 1.440 sum -18.860 3.654 4.895 19.824 Atomic orbital electron populations 1.21855 0.92260 1.02473 1.02566 1.21562 0.97299 0.95739 0.94109 1.21903 0.99941 0.95396 1.02617 1.22046 1.00683 0.87537 0.96755 1.61121 1.05314 1.10038 1.52958 1.20801 0.91498 1.01468 0.93352 1.21606 1.02136 0.97357 0.98548 1.20635 0.94595 0.95738 0.84399 0.92343 1.46038 1.06740 1.75234 1.09336 1.21095 0.82174 0.74305 0.91841 1.90663 1.63104 1.50287 1.41018 1.20289 0.92540 1.04482 0.93689 1.19540 0.94142 0.93290 1.11801 1.20732 0.94907 0.95847 0.99555 1.20710 0.94008 0.97419 1.14047 1.20943 0.98484 0.93363 1.00828 1.21308 0.96314 0.95825 1.08012 1.17713 0.91873 0.93136 0.87769 1.19578 0.99273 0.91513 1.40833 0.91119 1.26648 0.94176 1.04947 0.91950 1.69877 1.13750 1.34385 1.27315 0.85459 0.79697 0.76596 0.79261 1.17600 1.19077 1.19667 1.21748 0.92757 1.01846 0.98883 0.91813 0.91873 0.91885 0.94794 0.91834 0.91548 0.90037 0.93610 0.83183 0.90518 0.93195 0.89882 0.94162 0.75096 0.87073 0.88598 0.86640 0.86743 0.87746 0.88615 0.90367 0.89891 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.13 71.98 0.59 -0.82 16 2 C -0.08 -1.25 0.52 -51.38 -0.03 -1.27 16 3 C -0.14 -2.28 8.14 71.98 0.59 -1.69 16 4 C 0.06 1.08 4.77 87.15 0.42 1.50 16 5 N -0.66 -12.36 6.91 -527.71 -3.65 -16.01 16 6 C 0.06 1.37 5.87 83.94 0.49 1.87 16 7 C -0.16 -3.95 4.97 28.92 0.14 -3.80 16 8 C 0.15 3.71 2.07 44.68 0.09 3.80 16 9 H 0.06 1.83 5.87 -2.39 -0.01 1.81 16 10 N -0.72 -19.38 4.99 -444.00 -2.22 -21.60 16 11 C 0.52 19.71 7.36 87.66 0.65 20.35 16 12 O -0.57 -27.86 15.70 -3.03 -0.05 -27.91 16 13 C -0.07 -2.68 5.18 29.10 0.15 -2.53 16 14 C -0.19 -9.02 4.43 -19.41 -0.09 -9.11 16 15 C -0.09 -4.21 9.66 22.22 0.21 -4.00 16 16 C -0.24 -11.24 10.05 22.46 0.23 -11.02 16 17 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 18 C -0.20 -10.99 8.69 22.73 0.20 -10.79 16 19 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 20 C -0.48 -26.28 8.14 23.46 0.19 -26.09 16 21 H 0.07 3.74 6.68 -2.91 -0.02 3.72 16 22 C 0.04 1.92 5.16 85.26 0.44 2.36 16 23 N -0.83 -44.40 10.97 21.83 0.24 -44.16 16 24 Si 0.97 39.49 29.59 68.60 2.03 41.52 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 26 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 C -0.11 -1.83 3.66 30.21 0.11 -1.72 16 29 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 7.48 -2.39 -0.02 0.58 16 32 H 0.03 0.71 7.41 -2.39 -0.02 0.69 16 33 H 0.06 0.93 8.06 -2.38 -0.02 0.91 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.32 7.96 -2.39 -0.02 1.30 16 36 H 0.05 1.03 6.33 -2.39 -0.02 1.02 16 37 H 0.35 5.28 6.64 -89.69 -0.60 4.69 16 38 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.05 1.39 7.23 -2.39 -0.02 1.37 16 40 H 0.08 1.71 7.59 -2.39 -0.02 1.69 16 41 H 0.04 1.35 8.06 -2.39 -0.02 1.33 16 42 H 0.41 8.08 8.52 -92.71 -0.79 7.29 16 43 H 0.11 3.34 8.05 -2.38 -0.02 3.32 16 44 H 0.10 3.64 7.06 -2.39 -0.02 3.62 16 45 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 46 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 47 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 48 H 0.10 5.64 6.22 -2.91 -0.02 5.62 16 49 H 0.29 13.97 8.30 -92.71 -0.77 13.21 16 50 H 0.08 1.20 7.67 -2.38 -0.02 1.18 16 51 H 0.08 1.07 6.63 -2.39 -0.02 1.05 16 Total: -1.00 -69.18 390.35 0.40 -68.78 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.45 Total: 42.76 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 4.48 Total: -43.38 kcal Atomic # 7 Polarization: -76.14 SS G_CDS: -5.62 Total: -81.76 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -69.18 0.40 -68.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576478823.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.280 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds