Wall clock time and date at job start Tue Mar 31 2020 15:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46748 * 2 1 4 4 C 1.52996 * 109.47191 * 239.99914 * 2 1 3 5 5 C 1.53002 * 109.47191 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46779 * 59.99963 * 5 4 2 7 7 C 1.52996 * 109.47289 * 299.99977 * 6 5 4 8 8 H 1.08996 * 109.47467 * 299.99960 * 7 6 5 9 9 C 1.53000 * 109.47140 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47558 * 64.99980 * 9 7 6 11 11 C 1.34777 * 120.00276 * 179.97438 * 10 9 7 12 12 O 1.21579 * 119.99946 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99845 * 180.02562 * 11 10 9 14 14 C 1.39245 * 120.00215 * 175.51870 * 13 11 10 15 15 C 1.39472 * 119.83754 * 215.83689 * 14 13 11 16 16 C 1.36369 * 120.17335 * 180.02562 * 15 14 13 17 17 C 1.40867 * 119.82670 * 359.97438 * 16 15 14 18 18 C 1.41160 * 120.16789 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99267 * 335.26757 * 18 17 16 20 20 C 1.39890 * 120.00560 * 154.98693 * 18 17 16 21 21 N 1.30880 * 119.99788 * 345.09567 * 20 18 17 22 22 Si 1.86795 * 120.00051 * 165.09092 * 20 18 17 23 23 H 1.48499 * 109.47163 * 60.00854 * 22 20 18 24 24 H 1.48507 * 109.47070 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47385 * 300.00204 * 22 20 18 26 26 C 1.40868 * 119.67432 * 0.25389 * 17 16 15 27 27 C 1.36383 * 119.82307 * 359.53327 * 26 17 16 28 28 C 1.52998 * 109.46779 * 119.99877 * 2 1 3 29 29 H 1.09001 * 109.47364 * 300.00126 * 1 2 3 30 30 H 1.09005 * 109.46972 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46893 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47407 * 299.99869 * 3 2 1 34 34 H 1.09001 * 109.47282 * 60.00617 * 3 2 1 35 35 H 1.09001 * 109.47206 * 299.99923 * 4 2 1 36 36 H 1.09005 * 109.46966 * 60.00236 * 4 2 1 37 37 H 1.08998 * 109.46875 * 179.97438 * 5 4 2 38 38 H 1.09001 * 109.46983 * 300.00060 * 5 4 2 39 39 H 1.09000 * 109.46625 * 179.97438 * 6 5 4 40 40 H 1.09001 * 109.47284 * 60.00281 * 6 5 4 41 41 H 1.09004 * 109.47270 * 305.00124 * 9 7 6 42 42 H 1.09002 * 109.47243 * 184.99926 * 9 7 6 43 43 H 0.97002 * 119.99687 * 0.02562 * 10 9 7 44 44 H 0.97006 * 120.00152 * 355.51463 * 13 11 10 45 45 H 1.08011 * 119.91370 * 359.97438 * 15 14 13 46 46 H 1.08003 * 120.08723 * 179.97438 * 16 15 14 47 47 H 0.96998 * 119.99825 * 179.97438 * 21 20 18 48 48 H 1.07998 * 120.09204 * 179.75241 * 26 17 16 49 49 H 1.07999 * 119.91286 * 180.20822 * 27 26 17 50 50 H 1.09001 * 109.47284 * 60.00281 * 28 2 1 51 51 H 1.09001 * 109.47170 * 300.00115 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2488 9 6 4.0815 -1.4408 2.4982 10 7 5.5414 -1.3365 2.5594 11 6 6.2151 -1.9004 3.5814 12 8 5.6113 -2.4962 4.4524 13 7 7.5582 -1.8039 3.6379 14 6 8.2465 -2.3047 4.7399 15 6 9.3796 -1.6414 5.2105 16 6 10.0592 -2.1260 6.2889 17 6 9.6137 -3.2996 6.9282 18 6 10.3120 -3.8079 8.0447 19 1 11.3585 -3.5764 8.1782 20 6 9.6473 -4.6067 8.9812 21 7 8.3393 -4.6480 8.9950 22 14 10.6267 -5.6144 10.2119 23 1 11.4610 -4.7082 11.0413 24 1 9.6942 -6.3690 11.0874 25 1 11.5033 -6.5677 9.4852 26 6 8.4713 -3.9667 6.4442 27 6 7.7996 -3.4675 5.3674 28 6 2.0399 -0.7212 1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.9333 -1.2349 -2.1392 38 1 3.9330 0.3071 -1.2497 39 1 5.1705 -1.4415 -0.0007 40 1 3.7175 -2.4694 0.0000 41 1 3.7938 -2.4913 2.4550 42 1 3.6469 -0.9813 3.3860 43 1 6.0232 -0.8608 1.8647 44 1 8.0455 -1.3857 2.9108 45 1 9.7202 -0.7419 4.7190 46 1 10.9367 -1.6115 6.6518 47 1 7.8784 -5.2021 9.6441 48 1 8.1262 -4.8692 6.9267 49 1 6.9216 -3.9759 4.9972 50 1 1.6766 -1.7489 1.2493 51 1 1.6765 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665116359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:28 Heat of formation + Delta-G solvation = -40.256911 kcal Electronic energy + Delta-G solvation = -27735.557317 eV Core-core repulsion = 24019.072970 eV Total energy + Delta-G solvation = -3716.484348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.27401 -39.52412 -37.38749 -35.37403 -34.28480 -33.11591 -32.74340 -31.38571 -29.39368 -28.82641 -27.67367 -26.66598 -26.02718 -24.46888 -22.34824 -21.49775 -21.05486 -20.65715 -19.89462 -18.70763 -17.82603 -17.24271 -16.59121 -15.65550 -15.37724 -15.14378 -15.08648 -14.92579 -14.32210 -14.23670 -13.92108 -13.86105 -13.74488 -13.15283 -13.06191 -12.70405 -12.62973 -12.24183 -12.16525 -12.08486 -11.96823 -11.75545 -11.72910 -11.55925 -11.40377 -11.24650 -11.14200 -11.05140 -10.91010 -10.48217 -10.43375 -10.33328 -10.22785 -9.94116 -9.81245 -9.45617 -9.14153 -8.79225 -8.59688 -7.43613 -6.91082 -6.64548 -4.22562 2.76219 3.10292 3.11246 3.14426 3.16057 3.25206 3.81283 3.98842 4.27816 4.31440 4.37609 4.67313 4.72419 4.73511 4.86514 4.95639 5.01852 5.05409 5.19170 5.25905 5.34469 5.35855 5.42594 5.53768 5.60940 5.64198 5.69432 5.72697 5.75336 5.78547 5.83734 5.90608 5.95539 6.03275 6.06139 6.10417 6.21592 6.27022 6.47362 6.70791 6.91338 6.94755 7.12894 7.18913 7.37729 7.45121 7.70215 7.94305 8.10360 8.13784 8.34892 8.59157 8.71927 8.96342 9.01354 9.22468 10.27698 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.001929 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.659742 B =14513.517559 C =14971.563132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.099 4.099 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.752 5.752 11 C 0.692 3.308 12 O -0.575 6.575 13 N -0.669 5.669 14 C 0.013 3.987 15 C -0.108 4.108 16 C -0.215 4.215 17 C 0.103 3.897 18 C -0.460 4.460 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.792 5.792 22 Si 0.910 3.090 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.155 4.155 27 C -0.087 4.087 28 C -0.100 4.100 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.390 0.610 44 H 0.389 0.611 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.281 0.719 48 H 0.122 0.878 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 8.748 -19.672 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.118 4.118 8 H 0.097 0.903 9 C 0.021 3.979 10 N -0.409 5.409 11 C 0.393 3.607 12 O -0.452 6.452 13 N -0.315 5.315 14 C -0.079 4.079 15 C -0.129 4.129 16 C -0.235 4.235 17 C 0.100 3.900 18 C -0.490 4.490 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.418 5.418 22 Si 0.734 3.266 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.175 4.175 27 C -0.107 4.107 28 C -0.138 4.138 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.223 0.777 44 H 0.222 0.778 45 H 0.106 0.894 46 H 0.113 0.887 47 H 0.092 0.908 48 H 0.140 0.860 49 H 0.125 0.875 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.826 8.095 -18.708 24.083 hybrid contribution 0.777 0.100 -0.041 0.784 sum -12.049 8.194 -18.748 23.745 Atomic orbital electron populations 1.21868 0.94639 1.01757 1.01663 1.20516 0.95147 0.95538 0.95206 1.21981 1.01508 0.95249 1.01503 1.21597 0.95580 1.00386 0.96988 1.21584 0.95665 1.00866 0.97766 1.21596 1.00322 0.99554 0.93699 1.21456 0.96087 1.00098 0.94147 0.90311 1.21152 0.79021 1.00597 0.97178 1.45125 1.07348 1.60982 1.27490 1.16052 0.82024 0.80447 0.82174 1.90931 1.67783 1.46839 1.39650 1.42082 1.04273 1.62939 1.22168 1.17001 0.98035 0.98441 0.94463 1.20030 0.96925 0.98051 0.97868 1.20525 1.03360 0.99160 1.00497 1.17671 0.91545 0.89493 0.91257 1.19493 0.97564 1.26566 1.05348 0.90567 1.25929 0.94842 0.95545 0.98186 1.69850 1.08354 1.31685 1.31899 0.86352 0.80181 0.80157 0.79876 1.19097 1.20395 1.18900 1.21072 0.98438 1.01485 0.96546 1.20585 0.98863 0.94171 0.97056 1.21565 0.93949 1.00931 0.97396 0.92609 0.92799 0.92665 0.91986 0.92963 0.92738 0.91985 0.92235 0.92140 0.91717 0.91948 0.91708 0.91891 0.91860 0.77673 0.77812 0.89369 0.88741 0.90840 0.86017 0.87527 0.91529 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 8.47 37.16 0.31 -0.56 16 2 C -0.06 -0.42 0.77 -154.51 -0.12 -0.54 16 3 C -0.15 -0.92 7.78 37.16 0.29 -0.64 16 4 C -0.11 -0.69 4.73 -26.73 -0.13 -0.81 16 5 C -0.12 -0.79 5.65 -26.73 -0.15 -0.94 16 6 C -0.11 -0.86 5.08 -26.73 -0.14 -1.00 16 7 C -0.10 -0.81 1.95 -90.59 -0.18 -0.98 16 8 H 0.08 0.62 6.43 -51.93 -0.33 0.29 16 9 C 0.15 1.70 5.07 -4.04 -0.02 1.68 16 10 N -0.75 -9.79 5.29 -65.23 -0.34 -10.13 16 11 C 0.69 12.92 8.39 -86.92 -0.73 12.19 16 12 O -0.58 -13.61 13.79 5.30 0.07 -13.54 16 13 N -0.67 -12.22 5.31 -14.10 -0.07 -12.29 16 14 C 0.01 0.30 6.30 -83.57 -0.53 -0.22 16 15 C -0.11 -2.44 9.90 -39.80 -0.39 -2.83 16 16 C -0.22 -5.34 9.74 -39.26 -0.38 -5.73 16 17 C 0.10 2.83 5.58 -106.80 -0.60 2.23 16 18 C -0.46 -12.46 9.05 -37.86 -0.34 -12.80 16 19 H 0.08 1.96 7.89 -52.48 -0.41 1.54 16 20 C 0.07 1.88 5.19 -17.34 -0.09 1.79 16 21 N -0.79 -21.42 10.83 55.54 0.60 -20.82 16 22 Si 0.91 19.14 29.59 -169.99 -5.03 14.12 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 26 C -0.16 -4.29 8.63 -39.26 -0.34 -4.63 16 27 C -0.09 -2.24 8.61 -39.79 -0.34 -2.58 16 28 C -0.10 -0.76 4.02 -26.70 -0.11 -0.87 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 39 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.39 3.81 7.67 -40.82 -0.31 3.50 16 44 H 0.39 5.47 8.83 -40.82 -0.36 5.11 16 45 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 47 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 48 H 0.12 3.48 6.09 -52.49 -0.32 3.16 16 49 H 0.11 2.80 6.26 -52.49 -0.33 2.48 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -31.62 392.86 -11.33 -42.95 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.50 Total: 11.03 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.97 Total: -17.23 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.18 Total: -43.25 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.62 -11.33 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665116359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.689 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds