Wall clock time and date at job start Tue Mar 31 2020 15:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46748 * 2 1 4 4 C 1.52996 * 109.47191 * 239.99914 * 2 1 3 5 5 C 1.53002 * 109.47191 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46779 * 59.99963 * 5 4 2 7 7 C 1.52996 * 109.47289 * 299.99977 * 6 5 4 8 8 H 1.08996 * 109.47467 * 299.99960 * 7 6 5 9 9 C 1.53000 * 109.47140 * 180.02562 * 7 6 5 10 10 N 1.46496 * 109.47558 * 64.99980 * 9 7 6 11 11 C 1.34777 * 120.00276 * 179.97438 * 10 9 7 12 12 O 1.21579 * 119.99946 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99845 * 180.02562 * 11 10 9 14 14 C 1.39245 * 120.00215 * 175.51870 * 13 11 10 15 15 C 1.39472 * 119.83754 * 215.83689 * 14 13 11 16 16 C 1.36369 * 120.17335 * 180.02562 * 15 14 13 17 17 C 1.40867 * 119.82670 * 359.97438 * 16 15 14 18 18 C 1.41160 * 120.16789 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99267 * 335.26757 * 18 17 16 20 20 C 1.39890 * 120.00560 * 154.98693 * 18 17 16 21 21 N 1.30880 * 119.99788 * 345.09567 * 20 18 17 22 22 Si 1.86795 * 120.00051 * 165.09092 * 20 18 17 23 23 H 1.48499 * 109.47163 * 60.00854 * 22 20 18 24 24 H 1.48507 * 109.47070 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47385 * 300.00204 * 22 20 18 26 26 C 1.40868 * 119.67432 * 0.25389 * 17 16 15 27 27 C 1.36383 * 119.82307 * 359.53327 * 26 17 16 28 28 C 1.52998 * 109.46779 * 119.99877 * 2 1 3 29 29 H 1.09001 * 109.47364 * 300.00126 * 1 2 3 30 30 H 1.09005 * 109.46972 * 59.99846 * 1 2 3 31 31 H 1.09001 * 109.46983 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46893 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47407 * 299.99869 * 3 2 1 34 34 H 1.09001 * 109.47282 * 60.00617 * 3 2 1 35 35 H 1.09001 * 109.47206 * 299.99923 * 4 2 1 36 36 H 1.09005 * 109.46966 * 60.00236 * 4 2 1 37 37 H 1.08998 * 109.46875 * 179.97438 * 5 4 2 38 38 H 1.09001 * 109.46983 * 300.00060 * 5 4 2 39 39 H 1.09000 * 109.46625 * 179.97438 * 6 5 4 40 40 H 1.09001 * 109.47284 * 60.00281 * 6 5 4 41 41 H 1.09004 * 109.47270 * 305.00124 * 9 7 6 42 42 H 1.09002 * 109.47243 * 184.99926 * 9 7 6 43 43 H 0.97002 * 119.99687 * 0.02562 * 10 9 7 44 44 H 0.97006 * 120.00152 * 355.51463 * 13 11 10 45 45 H 1.08011 * 119.91370 * 359.97438 * 15 14 13 46 46 H 1.08003 * 120.08723 * 179.97438 * 16 15 14 47 47 H 0.96998 * 119.99825 * 179.97438 * 21 20 18 48 48 H 1.07998 * 120.09204 * 179.75241 * 26 17 16 49 49 H 1.07999 * 119.91286 * 180.20822 * 27 26 17 50 50 H 1.09001 * 109.47284 * 60.00281 * 28 2 1 51 51 H 1.09001 * 109.47170 * 300.00115 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2488 9 6 4.0815 -1.4408 2.4982 10 7 5.5414 -1.3365 2.5594 11 6 6.2151 -1.9004 3.5814 12 8 5.6113 -2.4962 4.4524 13 7 7.5582 -1.8039 3.6379 14 6 8.2465 -2.3047 4.7399 15 6 9.3796 -1.6414 5.2105 16 6 10.0592 -2.1260 6.2889 17 6 9.6137 -3.2996 6.9282 18 6 10.3120 -3.8079 8.0447 19 1 11.3585 -3.5764 8.1782 20 6 9.6473 -4.6067 8.9812 21 7 8.3393 -4.6480 8.9950 22 14 10.6267 -5.6144 10.2119 23 1 11.4610 -4.7082 11.0413 24 1 9.6942 -6.3690 11.0874 25 1 11.5033 -6.5677 9.4852 26 6 8.4713 -3.9667 6.4442 27 6 7.7996 -3.4675 5.3674 28 6 2.0399 -0.7212 1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.9333 -1.2349 -2.1392 38 1 3.9330 0.3071 -1.2497 39 1 5.1705 -1.4415 -0.0007 40 1 3.7175 -2.4694 0.0000 41 1 3.7938 -2.4913 2.4550 42 1 3.6469 -0.9813 3.3860 43 1 6.0232 -0.8608 1.8647 44 1 8.0455 -1.3857 2.9108 45 1 9.7202 -0.7419 4.7190 46 1 10.9367 -1.6115 6.6518 47 1 7.8784 -5.2021 9.6441 48 1 8.1262 -4.8692 6.9267 49 1 6.9216 -3.9759 4.9972 50 1 1.6766 -1.7489 1.2493 51 1 1.6765 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665116359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:27 Heat of formation + Delta-G solvation = -57.718758 kcal Electronic energy + Delta-G solvation = -27736.314520 eV Core-core repulsion = 24019.072970 eV Total energy + Delta-G solvation = -3717.241550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.46632 -40.54952 -39.17831 -36.57267 -35.99312 -34.74317 -33.70531 -32.25724 -31.35557 -30.64461 -28.16498 -27.40260 -27.16261 -26.04845 -23.26970 -22.95958 -22.85556 -21.58802 -21.40191 -19.44302 -19.21787 -19.14222 -18.16871 -17.09785 -16.60380 -16.32714 -16.13297 -15.80299 -15.63532 -15.43168 -15.05202 -14.98306 -14.75304 -14.56556 -14.39858 -13.91483 -13.77183 -13.68469 -13.48396 -13.31354 -12.89855 -12.76336 -12.73678 -12.68895 -12.65245 -12.29980 -12.29404 -12.18445 -11.79793 -11.77378 -11.74684 -11.70875 -11.27930 -11.08408 -11.00382 -10.86517 -10.82197 -10.47986 -10.05491 -9.41948 -8.80641 -8.56773 -6.24738 0.89858 1.17423 1.38639 1.50225 1.52787 1.81183 2.20959 2.24880 2.80661 3.41631 3.63160 3.73287 3.77199 3.80226 4.07617 4.19469 4.33646 4.42472 4.46466 4.49912 4.52068 4.56949 4.63157 4.70103 4.77175 4.84310 4.88265 4.94701 5.01939 5.04597 5.11224 5.12462 5.15327 5.20686 5.21042 5.24877 5.31620 5.33101 5.33962 5.43435 5.46451 5.47884 5.53916 5.57922 5.71074 5.71428 5.82846 6.12137 6.15891 6.24414 6.39141 6.72132 6.95603 7.05168 7.21047 7.71367 8.37278 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.001929 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.659742 B =14513.517559 C =14971.563132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.085 4.085 8 H 0.091 0.909 9 C 0.145 3.855 10 N -0.725 5.725 11 C 0.689 3.311 12 O -0.629 6.629 13 N -0.657 5.657 14 C 0.027 3.973 15 C -0.101 4.101 16 C -0.221 4.221 17 C 0.069 3.931 18 C -0.494 4.494 19 H 0.082 0.918 20 C 0.026 3.974 21 N -0.833 5.833 22 Si 0.988 3.012 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.259 1.259 26 C -0.181 4.181 27 C -0.102 4.102 28 C -0.101 4.101 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.411 0.589 44 H 0.415 0.585 45 H 0.135 0.865 46 H 0.111 0.889 47 H 0.285 0.715 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.059 0.941 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 10.605 -21.564 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.103 4.103 8 H 0.109 0.891 9 C 0.021 3.979 10 N -0.382 5.382 11 C 0.389 3.611 12 O -0.510 6.510 13 N -0.306 5.306 14 C -0.067 4.067 15 C -0.121 4.121 16 C -0.241 4.241 17 C 0.067 3.933 18 C -0.523 4.523 19 H 0.100 0.900 20 C -0.187 4.187 21 N -0.459 5.459 22 Si 0.808 3.192 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.183 1.183 26 C -0.201 4.201 27 C -0.122 4.122 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.248 0.752 44 H 0.252 0.748 45 H 0.153 0.847 46 H 0.129 0.871 47 H 0.096 0.904 48 H 0.116 0.884 49 H 0.111 0.889 50 H 0.078 0.922 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.072 10.009 -20.693 25.964 hybrid contribution 0.432 -0.392 0.399 0.707 sum -11.640 9.617 -20.294 25.294 Atomic orbital electron populations 1.21863 0.94373 1.01719 1.01949 1.20492 0.95374 0.95681 0.94570 1.21975 1.01599 0.94845 1.01731 1.21594 0.95605 1.00170 0.97114 1.21558 0.95580 1.01165 0.97155 1.21591 1.00534 0.99076 0.93883 1.21362 0.96346 1.00131 0.92491 0.89111 1.21258 0.77951 1.00166 0.98570 1.44883 1.07787 1.59398 1.26175 1.16281 0.82017 0.80164 0.82614 1.90913 1.68833 1.49156 1.42066 1.41820 1.04296 1.62687 1.21758 1.17042 0.97880 0.96993 0.94823 1.20390 0.95819 0.98972 0.96933 1.20819 1.03998 0.98360 1.00966 1.18028 0.92027 0.90925 0.92336 1.19798 0.98016 1.28379 1.06126 0.89965 1.26891 0.95711 0.96101 1.00043 1.69948 1.10188 1.32682 1.33116 0.85177 0.78523 0.78367 0.77142 1.17986 1.19680 1.18282 1.20959 0.99779 1.01574 0.97779 1.20596 0.98572 0.95659 0.97387 1.21569 0.93480 1.00778 0.98062 0.92812 0.92034 0.92904 0.91775 0.92244 0.93069 0.92505 0.91372 0.91575 0.90897 0.91534 0.92739 0.93409 0.93370 0.75179 0.74824 0.84727 0.87054 0.90418 0.88435 0.88904 0.92188 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.47 71.98 0.61 -0.94 16 2 C -0.06 -0.69 0.77 -52.18 -0.04 -0.73 16 3 C -0.14 -1.50 7.78 71.98 0.56 -0.94 16 4 C -0.11 -1.14 4.73 30.59 0.14 -1.00 16 5 C -0.12 -1.21 5.65 30.59 0.17 -1.04 16 6 C -0.11 -1.49 5.08 30.59 0.16 -1.33 16 7 C -0.08 -1.24 1.95 -10.78 -0.02 -1.26 16 8 H 0.09 1.17 6.43 -2.39 -0.02 1.16 16 9 C 0.14 3.33 5.07 86.38 0.44 3.76 16 10 N -0.72 -17.69 5.29 -478.55 -2.53 -20.22 16 11 C 0.69 25.18 8.39 179.05 1.50 26.68 16 12 O -0.63 -30.45 13.79 -3.96 -0.05 -30.51 16 13 N -0.66 -22.75 5.31 -316.79 -1.68 -24.43 16 14 C 0.03 1.21 6.30 38.56 0.24 1.45 16 15 C -0.10 -4.32 9.90 22.13 0.22 -4.10 16 16 C -0.22 -10.84 9.74 22.48 0.22 -10.62 16 17 C 0.07 3.92 5.58 -21.27 -0.12 3.80 16 18 C -0.49 -27.42 9.05 23.39 0.21 -27.21 16 19 H 0.08 4.29 7.89 -2.91 -0.02 4.26 16 20 C 0.03 1.39 5.19 85.23 0.44 1.83 16 21 N -0.83 -46.99 10.83 21.82 0.24 -46.75 16 22 Si 0.99 39.82 29.59 68.60 2.03 41.85 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 26 C -0.18 -10.47 8.63 22.48 0.19 -10.28 16 27 C -0.10 -5.44 8.61 22.14 0.19 -5.25 16 28 C -0.10 -1.44 4.02 30.61 0.12 -1.31 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.64 4.81 -2.39 -0.01 0.62 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.63 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.67 6.43 -2.39 -0.02 0.65 16 39 H 0.07 0.82 7.18 -2.39 -0.02 0.80 16 40 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.41 6.75 7.67 -92.71 -0.71 6.04 16 44 H 0.41 10.17 8.83 -92.70 -0.82 9.35 16 45 H 0.13 4.51 8.06 -2.90 -0.02 4.48 16 46 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 47 H 0.29 14.70 8.30 -92.71 -0.77 13.93 16 48 H 0.10 6.00 6.09 -2.91 -0.02 5.98 16 49 H 0.09 5.15 6.26 -2.91 -0.02 5.13 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -72.28 392.86 2.65 -69.63 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.60 Total: 38.92 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 5.25 Total: -28.50 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.98 Total: -91.40 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.51 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -72.28 2.65 -69.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665116359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.915 kcal (2) G-P(sol) polarization free energy of solvation -72.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds