Wall clock time and date at job start Tue Mar 31 2020 15:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46691 * 2 1 4 4 C 1.53000 * 109.47239 * 119.99968 * 2 1 3 5 5 C 1.53002 * 109.46746 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47305 * 300.00365 * 5 4 2 7 7 C 1.53000 * 109.47517 * 60.00107 * 6 5 4 8 8 H 1.09000 * 109.46625 * 59.99932 * 7 6 5 9 9 C 1.53000 * 109.47073 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47067 * 294.99768 * 9 7 6 11 11 C 1.34782 * 120.00042 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99585 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00011 * 180.02562 * 11 10 9 14 14 C 1.39240 * 119.99780 * 184.03015 * 13 11 10 15 15 C 1.39486 * 119.83170 * 324.48925 * 14 13 11 16 16 C 1.36376 * 120.16479 * 179.72204 * 15 14 13 17 17 C 1.40870 * 119.83180 * 0.54862 * 16 15 14 18 18 C 1.41152 * 120.16521 * 179.70221 * 17 16 15 19 19 H 1.08006 * 120.00319 * 214.80601 * 18 17 16 20 20 C 1.39893 * 120.00152 * 34.80458 * 18 17 16 21 21 N 1.30880 * 120.00047 * 355.56283 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 175.55782 * 20 18 17 23 23 H 1.48499 * 109.47319 * 90.00207 * 22 20 18 24 24 H 1.48502 * 109.47035 * 210.00032 * 22 20 18 25 25 H 1.48497 * 109.47141 * 330.00217 * 22 20 18 26 26 C 1.40867 * 119.67071 * 359.72614 * 17 16 15 27 27 C 1.36370 * 119.83028 * 359.97438 * 26 17 16 28 28 C 1.52993 * 109.46845 * 300.00124 * 7 6 5 29 29 H 1.08995 * 109.47010 * 299.99763 * 1 2 3 30 30 H 1.09000 * 109.47313 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.46368 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46925 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47133 * 299.99977 * 3 2 1 34 34 H 1.09001 * 109.46963 * 60.00018 * 3 2 1 35 35 H 1.09000 * 109.46625 * 60.00203 * 4 2 1 36 36 H 1.08995 * 109.47339 * 300.00067 * 4 2 1 37 37 H 1.09000 * 109.46820 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.46834 * 60.00928 * 5 4 2 39 39 H 1.09001 * 109.47209 * 299.99443 * 6 5 4 40 40 H 1.09006 * 109.46963 * 180.02562 * 6 5 4 41 41 H 1.08997 * 109.46582 * 174.99902 * 9 7 6 42 42 H 1.08994 * 109.47107 * 54.99993 * 9 7 6 43 43 H 0.97003 * 120.00115 * 0.02562 * 10 9 7 44 44 H 0.97002 * 120.00646 * 4.29661 * 13 11 10 45 45 H 1.07992 * 119.91391 * 0.02562 * 15 14 13 46 46 H 1.07998 * 120.08356 * 180.27426 * 16 15 14 47 47 H 0.97000 * 120.00075 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.08556 * 179.97438 * 26 17 16 49 49 H 1.08001 * 119.92082 * 180.02562 * 27 26 17 50 50 H 1.09000 * 109.47424 * 179.97438 * 28 7 6 51 51 H 1.09009 * 109.47158 * 299.99616 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7217 1.2488 6 6 4.0796 -1.4432 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 1 3.9332 0.3056 -1.2498 9 6 4.0796 -1.4432 -2.4989 10 7 5.5396 -1.3397 -2.5606 11 6 6.2126 -1.9044 -3.5828 12 8 5.6080 -2.5001 -4.4533 13 7 7.5558 -1.8096 -3.6393 14 6 8.2441 -2.3196 -4.7370 15 6 7.7921 -3.4827 -5.3602 16 6 8.4578 -3.9850 -6.4393 17 6 9.6111 -3.3324 -6.9172 18 6 10.3091 -3.8496 -8.0297 19 1 11.3850 -3.7674 -8.0782 20 6 9.6075 -4.4688 -9.0696 21 7 8.3145 -4.6464 -8.9718 22 14 10.5160 -5.0421 -10.5978 23 1 10.9734 -6.4418 -10.4059 24 1 9.6058 -4.9749 -11.7692 25 1 11.6912 -4.1653 -10.8331 26 6 10.0647 -2.1614 -6.2789 27 6 9.3851 -1.6677 -5.2047 28 6 2.0396 -0.7215 -1.2493 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 1.2491 36 1 1.6768 -0.2075 2.1392 37 1 3.9335 -1.2351 2.1390 38 1 3.9337 0.3058 1.2487 39 1 3.7160 -2.4708 -0.0002 40 1 5.1696 -1.4439 -0.0005 41 1 3.6449 -0.9837 -3.3866 42 1 3.7913 -2.4934 -2.4553 43 1 6.0219 -0.8648 -1.8659 44 1 8.0434 -1.3897 -2.9135 45 1 6.9101 -3.9841 -4.9903 46 1 8.1041 -4.8832 -6.9236 47 1 7.8280 -5.0760 -9.6926 48 1 10.9484 -1.6559 -6.6394 49 1 9.7313 -0.7697 -4.7145 50 1 1.6761 -0.2073 -2.1390 51 1 1.6759 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665116360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:33 Heat of formation + Delta-G solvation = -39.302751 kcal Electronic energy + Delta-G solvation = -27736.563484 eV Core-core repulsion = 24020.120511 eV Total energy + Delta-G solvation = -3716.442972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.28984 -39.55158 -37.40484 -35.38350 -34.27296 -33.11133 -32.71430 -31.39528 -29.41621 -28.79443 -27.67864 -26.67161 -26.03086 -24.46259 -22.35579 -21.52775 -21.03162 -20.66613 -19.91621 -18.71466 -17.84356 -17.21762 -16.61156 -15.66580 -15.38454 -15.11814 -15.10232 -14.92374 -14.32119 -14.24297 -13.93152 -13.86280 -13.75767 -13.15995 -13.05419 -12.71436 -12.62354 -12.25021 -12.17373 -12.09671 -11.98668 -11.76080 -11.66816 -11.56272 -11.37890 -11.25242 -11.16870 -11.09549 -10.86544 -10.48866 -10.43030 -10.33981 -10.23406 -9.91785 -9.82000 -9.52430 -9.03122 -8.80144 -8.67255 -7.44042 -6.79169 -6.52089 -4.25771 2.75243 3.09429 3.12823 3.14993 3.17099 3.24758 3.79409 4.04285 4.27014 4.30783 4.36943 4.66286 4.70601 4.80014 4.85370 4.94816 5.01169 5.04799 5.18572 5.25265 5.33876 5.35381 5.41926 5.53158 5.60249 5.63624 5.68836 5.71389 5.73468 5.75332 5.82663 5.89949 5.94792 6.02705 6.05410 6.09706 6.19969 6.26296 6.44765 6.68586 6.89074 6.92996 7.12164 7.22739 7.36283 7.46898 7.72637 7.91529 8.10424 8.16720 8.37547 8.56099 8.75288 9.00777 9.02278 9.19617 10.38940 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.001929 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.321968 B =14509.960679 C =14983.858199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.099 4.099 8 H 0.079 0.921 9 C 0.145 3.855 10 N -0.752 5.752 11 C 0.693 3.307 12 O -0.574 6.574 13 N -0.670 5.670 14 C 0.026 3.974 15 C -0.094 4.094 16 C -0.143 4.143 17 C 0.097 3.903 18 C -0.464 4.464 19 H 0.074 0.926 20 C 0.068 3.932 21 N -0.809 5.809 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.203 4.203 27 C -0.118 4.118 28 C -0.100 4.100 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.390 0.610 44 H 0.390 0.610 45 H 0.108 0.892 46 H 0.130 0.870 47 H 0.277 0.723 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 9.241 19.837 25.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.159 4.159 6 C -0.152 4.152 7 C -0.118 4.118 8 H 0.097 0.903 9 C 0.020 3.980 10 N -0.409 5.409 11 C 0.394 3.606 12 O -0.451 6.451 13 N -0.316 5.316 14 C -0.066 4.066 15 C -0.115 4.115 16 C -0.163 4.163 17 C 0.095 3.905 18 C -0.495 4.495 19 H 0.093 0.907 20 C -0.147 4.147 21 N -0.436 5.436 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.223 4.223 27 C -0.138 4.138 28 C -0.138 4.138 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.224 0.776 44 H 0.223 0.777 45 H 0.126 0.874 46 H 0.148 0.852 47 H 0.088 0.912 48 H 0.114 0.886 49 H 0.107 0.893 50 H 0.085 0.915 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.917 8.595 18.874 24.432 hybrid contribution 0.733 0.321 -0.087 0.805 sum -12.184 8.916 18.787 24.101 Atomic orbital electron populations 1.21868 0.94634 1.01762 1.01664 1.20519 0.95152 0.95534 0.95201 1.21981 1.01501 0.95249 1.01506 1.21597 0.95577 1.00391 0.96990 1.21581 0.95669 1.00867 0.97762 1.21596 1.00319 0.99559 0.93696 1.21446 0.96111 1.00094 0.94139 0.90312 1.21156 0.78973 1.00628 0.97201 1.45124 1.07375 1.60978 1.27423 1.16041 0.81997 0.80401 0.82198 1.90938 1.67725 1.46779 1.39645 1.42108 1.04328 1.62642 1.22517 1.17092 0.97466 0.97947 0.94121 1.20676 0.99181 0.94201 0.97408 1.21309 0.98043 1.01516 0.95398 1.17718 0.92108 0.89690 0.91028 1.19446 0.94835 1.32960 1.02273 0.90745 1.25881 0.94873 0.93667 1.00239 1.69797 1.07694 1.33551 1.32592 0.86221 0.79923 0.79513 0.80409 1.19596 1.20365 1.18825 1.20663 1.02837 0.98720 1.00073 1.20050 0.97042 0.98457 0.98259 1.21555 0.93944 1.00938 0.97406 0.92803 0.92602 0.92662 0.91991 0.92734 0.92965 0.91984 0.92225 0.92135 0.91726 0.91697 0.91952 0.91840 0.91855 0.77646 0.77743 0.87405 0.85213 0.91169 0.88606 0.89269 0.91547 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.47 37.16 0.31 -0.55 16 2 C -0.06 -0.42 0.77 -154.50 -0.12 -0.53 16 3 C -0.15 -0.92 7.78 37.16 0.29 -0.63 16 4 C -0.11 -0.68 4.73 -26.73 -0.13 -0.81 16 5 C -0.12 -0.78 5.65 -26.73 -0.15 -0.93 16 6 C -0.11 -0.85 5.08 -26.73 -0.14 -0.99 16 7 C -0.10 -0.80 1.95 -90.62 -0.18 -0.97 16 8 H 0.08 0.61 6.43 -51.93 -0.33 0.28 16 9 C 0.15 1.68 5.07 -4.04 -0.02 1.66 16 10 N -0.75 -9.66 5.29 -65.23 -0.34 -10.01 16 11 C 0.69 12.81 8.39 -86.92 -0.73 12.08 16 12 O -0.57 -13.49 13.78 5.29 0.07 -13.42 16 13 N -0.67 -12.10 5.31 -14.10 -0.07 -12.18 16 14 C 0.03 0.60 6.30 -83.56 -0.53 0.08 16 15 C -0.09 -2.43 8.61 -39.79 -0.34 -2.77 16 16 C -0.14 -3.93 8.62 -39.26 -0.34 -4.27 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.65 9.02 -37.86 -0.34 -12.99 16 19 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 20 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 21 N -0.81 -22.12 10.60 55.54 0.59 -21.53 16 22 Si 0.91 19.54 29.56 -169.99 -5.03 14.51 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 25 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 26 C -0.20 -5.01 9.74 -39.26 -0.38 -5.39 16 27 C -0.12 -2.62 9.90 -39.79 -0.39 -3.02 16 28 C -0.10 -0.76 4.01 -26.73 -0.11 -0.86 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 4.81 -51.93 -0.25 0.14 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.46 7.18 -51.93 -0.37 0.09 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.39 3.75 7.67 -40.82 -0.31 3.44 16 44 H 0.39 5.39 8.83 -40.82 -0.36 5.03 16 45 H 0.11 2.82 6.24 -52.49 -0.33 2.49 16 46 H 0.13 3.74 6.13 -52.49 -0.32 3.42 16 47 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 48 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 49 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -31.71 392.75 -11.34 -43.05 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -8.50 Total: 10.77 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -3.97 Total: -17.12 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.17 Total: -43.72 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.07 Total: -13.42 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.71 -11.34 -43.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665116360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.751 kcal (2) G-P(sol) polarization free energy of solvation -31.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds