Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46691 * 2 1 4 4 C 1.53000 * 109.47239 * 119.99968 * 2 1 3 5 5 C 1.53002 * 109.46746 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47305 * 300.00365 * 5 4 2 7 7 C 1.53000 * 109.47517 * 60.00107 * 6 5 4 8 8 H 1.09000 * 109.46625 * 59.99932 * 7 6 5 9 9 C 1.53000 * 109.47073 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47067 * 294.99768 * 9 7 6 11 11 C 1.34782 * 120.00042 * 180.02562 * 10 9 7 12 12 O 1.21584 * 119.99585 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00011 * 180.02562 * 11 10 9 14 14 C 1.39240 * 119.99780 * 184.03015 * 13 11 10 15 15 C 1.39486 * 119.83170 * 324.48925 * 14 13 11 16 16 C 1.36376 * 120.16479 * 179.72204 * 15 14 13 17 17 C 1.40870 * 119.83180 * 0.54862 * 16 15 14 18 18 C 1.41152 * 120.16521 * 179.70221 * 17 16 15 19 19 H 1.08006 * 120.00319 * 214.80601 * 18 17 16 20 20 C 1.39893 * 120.00152 * 34.80458 * 18 17 16 21 21 N 1.30880 * 120.00047 * 355.56283 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 175.55782 * 20 18 17 23 23 H 1.48499 * 109.47319 * 90.00207 * 22 20 18 24 24 H 1.48502 * 109.47035 * 210.00032 * 22 20 18 25 25 H 1.48497 * 109.47141 * 330.00217 * 22 20 18 26 26 C 1.40867 * 119.67071 * 359.72614 * 17 16 15 27 27 C 1.36370 * 119.83028 * 359.97438 * 26 17 16 28 28 C 1.52993 * 109.46845 * 300.00124 * 7 6 5 29 29 H 1.08995 * 109.47010 * 299.99763 * 1 2 3 30 30 H 1.09000 * 109.47313 * 60.00133 * 1 2 3 31 31 H 1.09001 * 109.46368 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46925 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47133 * 299.99977 * 3 2 1 34 34 H 1.09001 * 109.46963 * 60.00018 * 3 2 1 35 35 H 1.09000 * 109.46625 * 60.00203 * 4 2 1 36 36 H 1.08995 * 109.47339 * 300.00067 * 4 2 1 37 37 H 1.09000 * 109.46820 * 179.97438 * 5 4 2 38 38 H 1.08998 * 109.46834 * 60.00928 * 5 4 2 39 39 H 1.09001 * 109.47209 * 299.99443 * 6 5 4 40 40 H 1.09006 * 109.46963 * 180.02562 * 6 5 4 41 41 H 1.08997 * 109.46582 * 174.99902 * 9 7 6 42 42 H 1.08994 * 109.47107 * 54.99993 * 9 7 6 43 43 H 0.97003 * 120.00115 * 0.02562 * 10 9 7 44 44 H 0.97002 * 120.00646 * 4.29661 * 13 11 10 45 45 H 1.07992 * 119.91391 * 0.02562 * 15 14 13 46 46 H 1.07998 * 120.08356 * 180.27426 * 16 15 14 47 47 H 0.97000 * 120.00075 * 180.02562 * 21 20 18 48 48 H 1.08001 * 120.08556 * 179.97438 * 26 17 16 49 49 H 1.08001 * 119.92082 * 180.02562 * 27 26 17 50 50 H 1.09000 * 109.47424 * 179.97438 * 28 7 6 51 51 H 1.09009 * 109.47158 * 299.99616 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7217 1.2488 6 6 4.0796 -1.4432 -0.0005 7 6 3.5695 -0.7220 -1.2497 8 1 3.9332 0.3056 -1.2498 9 6 4.0796 -1.4432 -2.4989 10 7 5.5396 -1.3397 -2.5606 11 6 6.2126 -1.9044 -3.5828 12 8 5.6080 -2.5001 -4.4533 13 7 7.5558 -1.8096 -3.6393 14 6 8.2441 -2.3196 -4.7370 15 6 7.7921 -3.4827 -5.3602 16 6 8.4578 -3.9850 -6.4393 17 6 9.6111 -3.3324 -6.9172 18 6 10.3091 -3.8496 -8.0297 19 1 11.3850 -3.7674 -8.0782 20 6 9.6075 -4.4688 -9.0696 21 7 8.3145 -4.6464 -8.9718 22 14 10.5160 -5.0421 -10.5978 23 1 10.9734 -6.4418 -10.4059 24 1 9.6058 -4.9749 -11.7692 25 1 11.6912 -4.1653 -10.8331 26 6 10.0647 -2.1614 -6.2789 27 6 9.3851 -1.6677 -5.2047 28 6 2.0396 -0.7215 -1.2493 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6768 -1.7489 1.2491 36 1 1.6768 -0.2075 2.1392 37 1 3.9335 -1.2351 2.1390 38 1 3.9337 0.3058 1.2487 39 1 3.7160 -2.4708 -0.0002 40 1 5.1696 -1.4439 -0.0005 41 1 3.6449 -0.9837 -3.3866 42 1 3.7913 -2.4934 -2.4553 43 1 6.0219 -0.8648 -1.8659 44 1 8.0434 -1.3897 -2.9135 45 1 6.9101 -3.9841 -4.9903 46 1 8.1041 -4.8832 -6.9236 47 1 7.8280 -5.0760 -9.6926 48 1 10.9484 -1.6559 -6.6394 49 1 9.7313 -0.7697 -4.7145 50 1 1.6761 -0.2073 -2.1390 51 1 1.6759 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665116360.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -56.867395 kcal Electronic energy + Delta-G solvation = -27737.325144 eV Core-core repulsion = 24020.120511 eV Total energy + Delta-G solvation = -3717.204632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.48631 -40.55612 -39.18667 -36.56508 -35.98311 -34.71085 -33.70553 -32.25881 -31.37149 -30.61452 -28.16520 -27.40042 -27.16213 -26.04863 -23.29016 -22.95633 -22.83028 -21.59926 -21.40641 -19.43792 -19.20253 -19.15564 -18.17879 -17.08124 -16.60393 -16.32638 -16.13703 -15.79223 -15.63963 -15.42743 -15.05536 -14.97039 -14.75370 -14.57616 -14.39495 -13.92711 -13.77285 -13.67373 -13.47081 -13.28323 -12.91607 -12.82834 -12.73706 -12.67935 -12.62703 -12.29928 -12.29093 -12.18460 -11.79686 -11.78509 -11.75438 -11.68492 -11.32125 -11.07519 -10.95197 -10.85208 -10.82207 -10.52973 -10.05690 -9.41770 -8.68243 -8.46727 -6.29649 0.88751 1.16206 1.39349 1.47835 1.55095 1.79431 2.21857 2.26331 2.85279 3.39827 3.62956 3.72141 3.73383 3.79947 4.07565 4.19334 4.33554 4.42428 4.46523 4.49880 4.51326 4.56991 4.63153 4.70055 4.77082 4.84162 4.88212 4.94606 5.02677 5.04548 5.11204 5.14295 5.15329 5.19122 5.20762 5.24843 5.31543 5.33558 5.36527 5.43122 5.45431 5.47616 5.53839 5.57595 5.71385 5.73228 5.83354 6.12156 6.18001 6.22895 6.40570 6.74419 6.99006 7.06200 7.19297 7.69457 8.46217 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.030090 B = 0.001929 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.321968 B =14509.960679 C =14983.858199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.085 4.085 8 H 0.091 0.909 9 C 0.145 3.855 10 N -0.724 5.724 11 C 0.689 3.311 12 O -0.628 6.628 13 N -0.658 5.658 14 C 0.042 3.958 15 C -0.110 4.110 16 C -0.167 4.167 17 C 0.062 3.938 18 C -0.496 4.496 19 H 0.080 0.920 20 C 0.020 3.980 21 N -0.849 5.849 22 Si 0.991 3.009 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.255 1.255 26 C -0.207 4.207 27 C -0.109 4.109 28 C -0.101 4.101 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.411 0.589 44 H 0.416 0.584 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.281 0.719 48 H 0.114 0.886 49 H 0.137 0.863 50 H 0.062 0.938 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 11.434 21.670 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.201 4.201 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.151 4.151 7 C -0.103 4.103 8 H 0.109 0.891 9 C 0.020 3.980 10 N -0.382 5.382 11 C 0.390 3.610 12 O -0.509 6.509 13 N -0.306 5.306 14 C -0.053 4.053 15 C -0.130 4.130 16 C -0.188 4.188 17 C 0.060 3.940 18 C -0.527 4.527 19 H 0.098 0.902 20 C -0.191 4.191 21 N -0.477 5.477 22 Si 0.812 3.188 23 H -0.187 1.187 24 H -0.199 1.199 25 H -0.179 1.179 26 C -0.227 4.227 27 C -0.130 4.130 28 C -0.139 4.139 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.249 0.751 44 H 0.253 0.747 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.091 0.909 48 H 0.132 0.868 49 H 0.155 0.845 50 H 0.080 0.920 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.152 10.840 20.806 26.421 hybrid contribution 0.387 -0.294 -0.489 0.689 sum -11.765 10.546 20.317 25.737 Atomic orbital electron populations 1.21864 0.94385 1.01717 1.01946 1.20495 0.95368 0.95683 0.94572 1.21974 1.01602 0.94839 1.01730 1.21594 0.95616 1.00167 0.97115 1.21555 0.95573 1.01170 0.97162 1.21591 1.00547 0.99074 0.93873 1.21351 0.96350 1.00136 0.92491 0.89097 1.21260 0.77923 1.00193 0.98584 1.44883 1.07802 1.59390 1.26109 1.16273 0.81995 0.80123 0.82630 1.90921 1.68779 1.49097 1.42059 1.41845 1.04339 1.62355 1.22111 1.17127 0.97293 0.96427 0.94420 1.20669 0.98919 0.95743 0.97693 1.21166 0.99381 1.01573 0.96643 1.18067 0.92623 0.91254 0.92082 1.19744 0.95241 1.34584 1.03142 0.90203 1.26867 0.95563 0.93263 1.03420 1.69927 1.09417 1.34608 1.33785 0.85066 0.78617 0.79234 0.75879 1.18715 1.19854 1.17850 1.20943 1.03445 0.97846 1.00442 1.20415 0.95911 0.99367 0.97280 1.21560 0.93498 1.00775 0.98063 0.92049 0.92803 0.92910 0.91764 0.93060 0.92260 0.92517 0.91377 0.91580 0.90900 0.92738 0.91511 0.93334 0.93382 0.75144 0.74723 0.88785 0.87865 0.90864 0.86838 0.84525 0.91964 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.47 71.98 0.61 -0.93 16 2 C -0.06 -0.69 0.77 -52.18 -0.04 -0.73 16 3 C -0.14 -1.48 7.78 71.98 0.56 -0.92 16 4 C -0.11 -1.13 4.73 30.59 0.14 -0.99 16 5 C -0.12 -1.20 5.65 30.59 0.17 -1.02 16 6 C -0.11 -1.46 5.08 30.59 0.16 -1.31 16 7 C -0.08 -1.22 1.95 -10.80 -0.02 -1.24 16 8 H 0.09 1.15 6.43 -2.39 -0.02 1.14 16 9 C 0.14 3.28 5.07 86.38 0.44 3.72 16 10 N -0.72 -17.39 5.29 -478.56 -2.53 -19.92 16 11 C 0.69 24.89 8.39 179.05 1.50 26.39 16 12 O -0.63 -30.16 13.78 -3.98 -0.05 -30.21 16 13 N -0.66 -22.42 5.31 -316.78 -1.68 -24.10 16 14 C 0.04 1.85 6.30 38.57 0.24 2.10 16 15 C -0.11 -5.84 8.61 22.14 0.19 -5.65 16 16 C -0.17 -9.70 8.62 22.48 0.19 -9.51 16 17 C 0.06 3.50 5.55 -21.28 -0.12 3.38 16 18 C -0.50 -27.74 9.02 23.39 0.21 -27.53 16 19 H 0.08 4.20 7.85 -2.91 -0.02 4.18 16 20 C 0.02 1.06 5.42 85.24 0.46 1.52 16 21 N -0.85 -48.55 10.60 21.82 0.23 -48.32 16 22 Si 0.99 40.65 29.56 68.60 2.03 42.68 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 C -0.21 -10.03 9.74 22.48 0.22 -9.81 16 27 C -0.11 -4.62 9.90 22.13 0.22 -4.40 16 28 C -0.10 -1.42 4.01 30.59 0.12 -1.30 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.63 4.81 -2.39 -0.01 0.61 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.07 0.65 6.43 -2.39 -0.02 0.64 16 39 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.81 7.18 -2.38 -0.02 0.79 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.41 6.59 7.67 -92.71 -0.71 5.88 16 44 H 0.42 9.94 8.83 -92.71 -0.82 9.12 16 45 H 0.09 5.19 6.24 -2.91 -0.02 5.17 16 46 H 0.10 6.42 6.13 -2.91 -0.02 6.40 16 47 H 0.28 14.75 8.30 -92.71 -0.77 13.98 16 48 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 49 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -72.68 392.75 2.66 -70.02 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.60 Total: 38.07 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 5.26 Total: -28.22 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -3.98 Total: -92.34 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -72.68 2.66 -70.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665116360.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.154 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds