Wall clock time and date at job start Tue Mar 31 2020 15:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52994 * 109.62536 * 2 1 4 4 N 1.46500 * 109.47620 * 299.99990 * 3 2 1 5 5 C 1.34774 * 120.00383 * 179.97438 * 4 3 2 6 6 O 1.21586 * 120.00007 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00108 * 179.97438 * 5 4 3 8 8 C 1.39959 * 120.00328 * 184.75492 * 7 5 4 9 9 C 1.39279 * 119.95008 * 143.59875 * 8 7 5 10 10 C 1.38486 * 120.43188 * 179.97438 * 9 8 7 11 11 C 1.37677 * 120.32059 * 0.02562 * 10 9 8 12 12 C 1.40742 * 119.88529 * 0.02562 * 11 10 9 13 13 C 1.41408 * 120.21214 * 179.97438 * 12 11 10 14 14 H 1.08009 * 119.99441 * 154.71908 * 13 12 11 15 15 C 1.39927 * 120.00251 * 334.72841 * 13 12 11 16 16 N 1.30829 * 119.99804 * 343.25429 * 15 13 12 17 17 Si 1.86796 * 120.00154 * 163.26375 * 15 13 12 18 18 H 1.48501 * 109.47513 * 89.99681 * 17 15 13 19 19 H 1.48506 * 109.47087 * 209.99643 * 17 15 13 20 20 H 1.48500 * 109.47160 * 329.99565 * 17 15 13 21 21 C 1.38235 * 119.94149 * 323.32723 * 8 7 5 22 22 C 1.50469 * 109.62834 * 239.61297 * 2 1 3 23 23 C 1.54259 * 112.38925 * 334.13177 * 22 2 1 24 24 C 1.54071 * 112.94959 * 318.57189 * 23 22 2 25 25 C 1.50471 * 112.49519 * 318.18041 * 24 23 22 26 26 C 1.54235 * 108.52927 * 94.14512 * 25 24 23 27 27 C 1.45544 * 112.40424 * 280.01428 * 26 25 24 28 28 H 1.09003 * 109.46638 * 98.92764 * 1 2 3 29 29 H 1.08999 * 109.47133 * 338.92383 * 1 2 3 30 30 H 1.08997 * 109.46938 * 218.92320 * 1 2 3 31 31 H 1.09005 * 109.47177 * 59.99747 * 3 2 1 32 32 H 1.08998 * 109.47240 * 179.97438 * 3 2 1 33 33 H 0.97006 * 119.99591 * 0.02562 * 4 3 2 34 34 H 0.97000 * 119.99851 * 4.75678 * 7 5 4 35 35 H 1.08011 * 119.78494 * 359.97438 * 9 8 7 36 36 H 1.08006 * 119.84249 * 180.02562 * 10 9 8 37 37 H 1.08005 * 120.05907 * 179.97438 * 11 10 9 38 38 H 0.97005 * 119.99909 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.16517 * 0.02747 * 21 8 7 40 40 H 1.09004 * 108.87531 * 95.22003 * 22 2 1 41 41 H 1.08996 * 108.87960 * 213.66173 * 22 2 1 42 42 H 1.09009 * 108.83467 * 197.61462 * 23 22 2 43 43 H 1.08999 * 108.57349 * 79.35416 * 23 22 2 44 44 H 1.08994 * 108.87751 * 197.39655 * 24 23 22 45 45 H 1.09004 * 108.87265 * 78.95291 * 24 23 22 46 46 H 1.08998 * 109.62736 * 334.43092 * 25 24 23 47 47 H 1.09008 * 109.62303 * 213.85631 * 25 24 23 48 48 H 1.09001 * 108.89525 * 159.25441 * 26 25 24 49 49 H 1.09004 * 108.89262 * 40.76786 * 26 25 24 50 50 H 1.08994 * 108.89404 * 301.17739 * 27 26 25 51 51 H 1.09002 * 108.89013 * 182.69197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 7 1.5576 2.1331 -1.1961 5 6 1.8862 3.4227 -1.4091 6 8 2.5868 4.0117 -0.6088 7 7 1.4391 4.0591 -2.5098 8 6 1.8604 5.3656 -2.7824 9 6 2.0832 5.7641 -4.0983 10 6 2.4997 7.0546 -4.3794 11 6 2.6987 7.9583 -3.3601 12 6 2.4786 7.5697 -2.0254 13 6 2.6813 8.4922 -0.9730 14 1 2.1541 8.3695 -0.0384 15 6 3.5648 9.5639 -1.1425 16 7 4.4384 9.5438 -2.1162 17 14 3.4971 11.0233 0.0215 18 1 4.4038 10.7810 1.1724 19 1 3.9263 12.2500 -0.6971 20 1 2.1075 11.1991 0.5146 21 6 2.0493 6.2602 -1.7456 22 6 2.0356 -0.7169 -1.2226 23 6 1.0241 -1.7517 -1.7571 24 6 0.3422 -2.5596 -0.6363 25 6 1.3051 -2.9713 0.4442 26 6 1.2598 -1.9168 1.5689 27 6 2.0482 -0.7349 1.2531 28 1 -0.3633 -0.1595 -1.0153 29 1 -0.3633 0.9589 0.3696 30 1 -0.3633 -0.7995 0.6456 31 1 1.6820 1.9559 0.8900 32 1 3.1339 1.4382 0.0005 33 1 0.9983 1.6633 -1.8345 34 1 0.8253 3.6116 -3.1130 35 1 1.9302 5.0620 -4.9047 36 1 2.6692 7.3535 -5.4034 37 1 3.0239 8.9636 -3.5841 38 1 5.0506 10.2870 -2.2340 39 1 1.8730 5.9533 -0.7252 40 1 2.2424 0.0171 -2.0015 41 1 2.9626 -1.2322 -0.9712 42 1 1.5445 -2.4420 -2.4212 43 1 0.2583 -1.2261 -2.3274 44 1 -0.1059 -3.4540 -1.0690 45 1 -0.4464 -1.9515 -0.1930 46 1 2.3136 -3.0265 0.0344 47 1 1.0148 -3.9438 0.8421 48 1 1.6438 -2.3626 2.4864 49 1 0.2242 -1.6175 1.7306 50 1 3.0822 -1.0352 1.0840 51 1 2.0154 -0.0517 2.1019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670084238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:59 Heat of formation + Delta-G solvation = -24.082018 kcal Electronic energy + Delta-G solvation = -28442.631117 eV Core-core repulsion = 24726.848166 eV Total energy + Delta-G solvation = -3715.782952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.78763 -40.91697 -39.08771 -36.42323 -35.98950 -34.83436 -33.50182 -33.13568 -31.73016 -29.89976 -29.01971 -27.45494 -27.15302 -25.43551 -24.05521 -22.98718 -22.63097 -21.66421 -20.63970 -19.70287 -19.54035 -18.82381 -17.57225 -17.08583 -16.68579 -16.61273 -16.45414 -16.41896 -15.84996 -15.61438 -15.32973 -15.13230 -14.76421 -14.61174 -14.20647 -13.97666 -13.89998 -13.57398 -13.51403 -13.21482 -13.14026 -12.81070 -12.74935 -12.56369 -12.44219 -12.21411 -12.19010 -11.98856 -11.69352 -11.57671 -11.43454 -11.29920 -11.23558 -11.16301 -11.05718 -10.99790 -10.65175 -10.53166 -10.09689 -9.36645 -8.68751 -8.60718 -6.35014 0.94645 1.05378 1.35813 1.47448 1.53036 1.70790 2.18889 2.23004 2.75042 3.31274 3.61442 3.70963 3.74383 3.76881 4.04005 4.24424 4.29649 4.36025 4.46801 4.49250 4.49684 4.56523 4.66561 4.70594 4.75276 4.83278 4.90838 5.06815 5.08933 5.12693 5.13640 5.14793 5.16972 5.21080 5.22933 5.27361 5.34598 5.37263 5.40041 5.42309 5.44536 5.49649 5.51564 5.61409 5.74849 5.79715 5.85569 6.07791 6.13449 6.20661 6.39100 6.70674 6.95869 7.03062 7.12858 7.63141 8.35272 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.002336 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.367791 B =11984.352594 C =12883.135890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.052 4.052 3 C 0.150 3.850 4 N -0.719 5.719 5 C 0.692 3.308 6 O -0.621 6.621 7 N -0.670 5.670 8 C 0.174 3.826 9 C -0.250 4.250 10 C -0.091 4.091 11 C -0.199 4.199 12 C 0.087 3.913 13 C -0.502 4.502 14 H 0.064 0.936 15 C 0.034 3.966 16 N -0.826 5.826 17 Si 0.984 3.016 18 H -0.265 1.265 19 H -0.258 1.258 20 H -0.260 1.260 21 C -0.236 4.236 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.140 4.140 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.105 4.105 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.411 0.589 34 H 0.418 0.582 35 H 0.132 0.868 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.288 0.712 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.060 0.940 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.770 -24.283 1.042 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.053 4.053 3 C 0.026 3.974 4 N -0.377 5.377 5 C 0.392 3.608 6 O -0.500 6.500 7 N -0.318 5.318 8 C 0.081 3.919 9 C -0.272 4.272 10 C -0.110 4.110 11 C -0.219 4.219 12 C 0.084 3.916 13 C -0.531 4.531 14 H 0.082 0.918 15 C -0.180 4.180 16 N -0.452 5.452 17 Si 0.804 3.196 18 H -0.190 1.190 19 H -0.182 1.182 20 H -0.184 1.184 21 C -0.258 4.258 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.177 4.177 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.143 4.143 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.248 0.752 34 H 0.255 0.745 35 H 0.150 0.850 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.093 0.907 50 H 0.079 0.921 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.935 -23.713 1.678 25.061 hybrid contribution 0.049 0.553 0.092 0.562 sum -7.887 -23.160 1.770 24.530 Atomic orbital electron populations 1.22721 0.93300 1.02291 1.03918 1.20382 0.96991 0.91076 0.96843 1.21340 0.98028 0.92030 0.85987 1.44873 1.56457 1.09016 1.27359 1.16248 0.80293 0.82373 0.81897 1.90969 1.44074 1.67306 1.47663 1.42284 1.49800 1.13746 1.26010 1.17283 0.98663 0.82426 0.93572 1.20453 1.14922 0.97992 0.93791 1.20827 0.98437 0.93450 0.98266 1.21301 1.08388 0.99871 0.92380 1.17869 0.88945 0.91062 0.93750 1.19739 1.23723 1.09336 1.00338 0.91798 1.26751 0.92399 1.01276 0.97596 1.69879 1.13773 1.31516 1.30002 0.85202 0.79723 0.76529 0.78180 1.19038 1.18240 1.18356 1.21023 1.14326 0.93240 0.97175 1.21510 0.99311 0.97790 0.96414 1.21901 0.98066 0.96903 0.97855 1.21843 0.99444 1.00161 0.96288 1.21308 1.00029 0.98132 0.95761 1.20561 1.01191 0.95232 0.98857 1.20459 1.00093 0.97269 0.96453 0.90565 0.94178 0.88617 0.93198 0.93519 0.75182 0.74484 0.85009 0.85815 0.87798 0.90091 0.89607 0.92485 0.92224 0.92315 0.91407 0.92268 0.89479 0.92340 0.91506 0.91753 0.90694 0.92095 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 6.61 71.99 0.48 -1.68 16 2 C -0.05 -0.81 0.53 -52.58 -0.03 -0.84 16 3 C 0.15 3.64 4.18 86.38 0.36 4.00 16 4 N -0.72 -18.36 4.66 -478.55 -2.23 -20.59 16 5 C 0.69 26.18 8.40 179.06 1.50 27.69 16 6 O -0.62 -31.25 13.87 -3.99 -0.06 -31.30 16 7 N -0.67 -23.94 5.34 -317.34 -1.69 -25.63 16 8 C 0.17 8.10 6.27 38.09 0.24 8.34 16 9 C -0.25 -10.72 9.97 22.58 0.23 -10.50 16 10 C -0.09 -4.24 10.02 22.20 0.22 -4.02 16 11 C -0.20 -11.01 8.69 22.75 0.20 -10.81 16 12 C 0.09 5.14 5.57 -21.31 -0.12 5.02 16 13 C -0.50 -29.97 9.05 23.46 0.21 -29.76 16 14 H 0.06 3.79 7.90 -2.91 -0.02 3.77 16 15 C 0.03 1.86 5.16 85.25 0.44 2.29 16 16 N -0.83 -45.90 10.94 21.82 0.24 -45.66 16 17 Si 0.98 41.16 29.59 68.60 2.03 43.19 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 C -0.24 -13.23 8.43 22.85 0.19 -13.04 16 22 C -0.11 -1.59 4.51 30.20 0.14 -1.45 16 23 C -0.11 -1.17 5.11 31.38 0.16 -1.01 16 24 C -0.14 -1.32 5.24 30.14 0.16 -1.16 16 25 C -0.11 -1.16 5.61 30.19 0.17 -0.99 16 26 C -0.12 -1.33 5.17 28.74 0.15 -1.19 16 27 C -0.10 -1.51 4.46 28.74 0.13 -1.38 16 28 H 0.08 0.81 5.54 -2.39 -0.01 0.80 16 29 H 0.04 0.65 7.72 -2.39 -0.02 0.63 16 30 H 0.10 1.01 3.03 -2.39 -0.01 1.00 16 31 H 0.05 1.38 8.13 -2.38 -0.02 1.36 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.41 7.39 7.28 -92.70 -0.67 6.71 16 34 H 0.42 10.60 8.84 -92.71 -0.82 9.78 16 35 H 0.13 4.49 8.06 -2.90 -0.02 4.46 16 36 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 37 H 0.10 5.93 6.17 -2.91 -0.02 5.91 16 38 H 0.29 14.36 8.30 -92.70 -0.77 13.59 16 39 H 0.09 5.16 6.33 -2.91 -0.02 5.14 16 40 H 0.06 0.91 6.54 -2.39 -0.02 0.90 16 41 H 0.06 0.89 6.65 -2.39 -0.02 0.88 16 42 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.07 0.63 6.94 -2.39 -0.02 0.61 16 44 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 0.76 4.09 -2.39 -0.01 0.75 16 46 H 0.06 0.67 6.99 -2.39 -0.02 0.66 16 47 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.76 5.52 -2.39 -0.01 0.74 16 50 H 0.06 0.91 7.48 -2.39 -0.02 0.89 16 51 H 0.06 0.91 7.97 -2.39 -0.02 0.89 16 Total: -1.00 -74.49 376.90 2.58 -71.91 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.53 Total: 38.57 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 4.82 Total: -30.48 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -3.68 Total: -91.87 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.06 Total: -31.30 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -74.49 2.58 -71.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670084238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.824 kcal (2) G-P(sol) polarization free energy of solvation -74.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds