Wall clock time and date at job start Tue Mar 31 2020 15:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.05565 * 2 1 4 4 C 1.54271 * 110.03164 * 238.58395 * 2 1 3 5 5 C 1.54885 * 104.19365 * 264.32654 * 4 2 1 6 6 C 1.54887 * 102.75146 * 322.05797 * 5 4 2 7 7 C 1.53878 * 110.02994 * 121.41818 * 2 1 3 8 8 H 1.08991 * 110.03166 * 359.95242 * 7 2 1 9 9 C 1.53002 * 110.02731 * 238.56878 * 7 2 1 10 10 C 1.53001 * 109.46577 * 175.00400 * 9 7 2 11 11 N 1.46501 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99817 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99822 * 180.02562 * 12 11 10 15 15 C 1.39953 * 120.00015 * 174.96675 * 14 12 11 16 16 C 1.39291 * 119.94473 * 326.49413 * 15 14 12 17 17 C 1.38493 * 120.42492 * 179.71952 * 16 15 14 18 18 C 1.37678 * 120.32276 * 0.55352 * 17 16 15 19 19 C 1.40740 * 119.88736 * 359.72651 * 18 17 16 20 20 C 1.41401 * 120.21343 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00265 * 151.42264 * 20 19 18 22 22 C 1.39927 * 120.00022 * 331.42072 * 20 19 18 23 23 N 1.30834 * 119.99786 * 166.27562 * 22 20 19 24 24 Si 1.86800 * 120.00324 * 346.27501 * 22 20 19 25 25 H 1.48502 * 109.46836 * 95.30946 * 24 22 20 26 26 H 1.48502 * 109.47501 * 215.31563 * 24 22 20 27 27 H 1.48504 * 109.46653 * 335.31516 * 24 22 20 28 28 C 1.38235 * 119.94915 * 146.76538 * 15 14 12 29 29 H 1.08998 * 109.47603 * 298.58167 * 1 2 3 30 30 H 1.09005 * 109.47289 * 58.58407 * 1 2 3 31 31 H 1.09003 * 109.47181 * 178.58077 * 1 2 3 32 32 H 1.09000 * 109.46795 * 181.41451 * 3 2 1 33 33 H 1.09002 * 109.46769 * 301.41478 * 3 2 1 34 34 H 1.08997 * 109.47171 * 61.41515 * 3 2 1 35 35 H 1.09000 * 110.48435 * 23.00232 * 4 2 1 36 36 H 1.08996 * 110.48419 * 145.51863 * 4 2 1 37 37 H 1.09003 * 110.75940 * 80.37322 * 5 4 2 38 38 H 1.08998 * 110.75670 * 203.55963 * 5 4 2 39 39 H 1.09003 * 110.48915 * 279.26428 * 6 5 4 40 40 H 1.09005 * 110.49155 * 156.62370 * 6 5 4 41 41 H 1.08996 * 109.47483 * 55.00343 * 9 7 2 42 42 H 1.08998 * 109.46823 * 294.99699 * 9 7 2 43 43 H 1.09001 * 109.47198 * 299.99678 * 10 9 7 44 44 H 1.08997 * 109.47715 * 60.00085 * 10 9 7 45 45 H 0.96998 * 120.00139 * 359.97438 * 11 10 9 46 46 H 0.97009 * 120.00138 * 354.96537 * 14 12 11 47 47 H 1.07994 * 119.78722 * 359.97438 * 16 15 14 48 48 H 1.08003 * 119.83455 * 180.25230 * 17 16 15 49 49 H 1.08003 * 120.05574 * 179.74057 * 18 17 16 50 50 H 0.97010 * 119.99685 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.15830 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3280 -2.1901 -0.7192 6 6 2.8874 -1.9407 0.7035 7 6 2.0570 -0.7536 1.2337 8 1 1.2229 -1.1186 1.8328 9 6 2.9408 0.1703 2.0741 10 6 3.3559 -0.5504 3.3583 11 7 4.2026 0.3340 4.1628 12 6 4.6891 -0.0913 5.3456 13 8 4.4248 -1.2088 5.7451 14 7 5.4676 0.7225 6.0858 15 6 5.8860 0.3222 7.3599 16 6 5.0525 -0.4665 8.1496 17 6 5.4589 -0.8731 9.4096 18 6 6.6877 -0.4924 9.9001 19 6 7.5382 0.3091 9.1159 20 6 8.8019 0.7037 9.6127 21 1 9.6156 0.8945 8.9286 22 6 8.9983 0.8469 10.9907 23 7 10.2110 0.9456 11.4718 24 14 7.5292 0.8973 12.1434 25 1 7.2788 -0.4623 12.6857 26 1 7.8096 1.8327 13.2622 27 1 6.3314 1.3615 11.3984 28 6 7.1234 0.7146 7.8349 29 1 -0.3634 0.4916 0.9024 30 1 -0.3634 0.5357 -0.8770 31 1 -0.3634 -1.0274 -0.0255 32 1 3.1443 1.4262 -0.0254 33 1 1.6761 1.9622 -0.8771 34 1 1.7174 1.9472 0.9024 35 1 1.3061 -0.7696 -2.0255 36 1 2.9798 -0.2987 -1.5980 37 1 1.4030 -2.7652 -0.6752 38 1 3.0650 -2.6943 -1.3442 39 1 3.9439 -1.6767 0.6571 40 1 2.7401 -2.8198 1.3310 41 1 2.3851 1.0731 2.3276 42 1 3.8304 0.4391 1.5046 43 1 2.4663 -0.8193 3.9279 44 1 3.9117 -1.4532 3.1050 45 1 4.4131 1.2257 3.8442 46 1 5.7379 1.5858 5.7355 47 1 4.0849 -0.7661 7.7753 48 1 4.8067 -1.4879 10.0121 49 1 6.9986 -0.8086 10.8849 50 1 10.3471 1.0453 12.4271 51 1 7.7684 1.3301 7.2253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677654121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:11 Heat of formation + Delta-G solvation = -34.826431 kcal Electronic energy + Delta-G solvation = -27509.306668 eV Core-core repulsion = 23793.057804 eV Total energy + Delta-G solvation = -3716.248864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.26809 -39.77791 -37.65070 -35.33907 -34.33427 -33.20834 -32.58947 -31.91334 -30.22929 -28.75147 -27.85684 -26.83646 -25.06941 -24.77804 -22.83536 -21.76725 -21.06781 -20.76404 -20.14653 -18.59746 -17.91799 -17.75390 -16.20294 -16.00270 -15.71400 -15.62626 -15.29105 -14.81328 -14.55890 -14.27462 -14.10324 -13.88008 -13.69869 -13.52097 -13.32018 -13.29611 -12.67011 -12.60689 -12.44741 -12.05906 -11.95480 -11.74604 -11.66048 -11.63486 -11.31207 -11.02024 -10.98200 -10.89623 -10.80890 -10.69032 -10.66768 -10.59273 -10.55880 -10.17042 -9.72071 -9.58951 -9.33471 -8.98169 -8.93782 -7.63297 -7.05279 -6.88281 -4.46008 2.52323 2.68610 2.93090 3.16148 3.26938 3.36792 3.57783 4.03379 4.12187 4.16795 4.27292 4.50304 4.58759 4.74100 4.84071 4.87711 4.97333 5.00497 5.07704 5.14666 5.28718 5.30959 5.38942 5.42250 5.46988 5.48206 5.58445 5.60604 5.63183 5.70027 5.77909 5.84231 5.87356 5.97287 6.02964 6.04430 6.07028 6.16009 6.38556 6.45064 6.52926 6.56667 6.74713 6.80039 7.05001 7.32896 7.42538 7.63804 7.74059 7.90249 8.14235 8.30637 8.39488 8.67424 8.83744 8.92198 10.14382 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032933 B = 0.001873 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.017378 B =14944.117578 C =15046.026920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.079 4.079 8 H 0.076 0.924 9 C -0.126 4.126 10 C 0.138 3.862 11 N -0.751 5.751 12 C 0.699 3.301 13 O -0.571 6.571 14 N -0.683 5.683 15 C 0.186 3.814 16 C -0.229 4.229 17 C -0.068 4.068 18 C -0.244 4.244 19 C 0.106 3.894 20 C -0.447 4.447 21 H 0.089 0.911 22 C 0.082 3.918 23 N -0.815 5.815 24 Si 0.915 3.085 25 H -0.272 1.272 26 H -0.295 1.295 27 H -0.241 1.241 28 C -0.234 4.234 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.393 0.607 46 H 0.398 0.602 47 H 0.109 0.891 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.284 0.716 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.622 1.191 -22.858 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.065 4.065 3 C -0.200 4.200 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.098 4.098 8 H 0.095 0.905 9 C -0.163 4.163 10 C 0.014 3.986 11 N -0.407 5.407 12 C 0.400 3.600 13 O -0.447 6.447 14 N -0.329 5.329 15 C 0.094 3.906 16 C -0.251 4.251 17 C -0.087 4.087 18 C -0.264 4.264 19 C 0.103 3.897 20 C -0.476 4.476 21 H 0.107 0.893 22 C -0.136 4.136 23 N -0.440 5.440 24 Si 0.743 3.257 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.164 1.164 28 C -0.256 4.256 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.226 0.774 46 H 0.232 0.768 47 H 0.127 0.873 48 H 0.115 0.885 49 H 0.116 0.884 50 H 0.094 0.906 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.683 0.191 -22.342 27.884 hybrid contribution -0.167 0.837 0.270 0.895 sum -16.850 1.028 -22.072 27.788 Atomic orbital electron populations 1.21910 0.94382 1.01687 1.01613 1.21184 0.95406 0.95271 0.94663 1.22042 1.01084 0.95334 1.01571 1.22488 1.00723 0.95359 0.96717 1.22473 1.00760 0.96655 0.96412 1.22490 0.99583 0.97853 0.96060 1.21778 0.97775 0.94914 0.95343 0.90525 1.22062 1.00131 0.99020 0.95126 1.21213 0.94027 0.92962 0.90447 1.45141 1.55666 1.18831 1.21101 1.15958 0.79309 0.84533 0.80218 1.90941 1.63096 1.19084 1.71595 1.42641 1.52953 1.20497 1.16832 1.17297 0.93290 0.98105 0.81949 1.20370 1.00674 1.08672 0.95347 1.20474 0.95498 0.97904 0.94798 1.20981 0.97502 1.06820 1.01060 1.17474 0.92226 0.89084 0.90953 1.19434 0.95929 1.39769 0.92452 0.89273 1.26153 0.97129 0.91177 0.99125 1.69672 1.22644 1.36043 1.15644 0.86280 0.82888 0.78119 0.78443 1.19877 1.22318 1.16413 1.20650 0.94647 1.10371 0.99979 0.92626 0.92823 0.92608 0.92245 0.93087 0.92254 0.91851 0.91582 0.91652 0.91710 0.91326 0.91447 0.90879 0.91004 0.91907 0.91688 0.77375 0.76822 0.87347 0.88515 0.88402 0.90554 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.14 37.16 0.30 -0.50 16 2 C -0.07 -0.39 0.94 -153.39 -0.14 -0.53 16 3 C -0.14 -0.81 7.20 37.16 0.27 -0.54 16 4 C -0.12 -0.68 5.90 -25.07 -0.15 -0.83 16 5 C -0.13 -0.78 6.91 -24.74 -0.17 -0.95 16 6 C -0.12 -0.87 5.53 -25.07 -0.14 -1.01 16 7 C -0.08 -0.53 2.58 -89.50 -0.23 -0.77 16 8 H 0.08 0.56 7.67 -51.93 -0.40 0.16 16 9 C -0.13 -0.88 3.50 -26.73 -0.09 -0.98 16 10 C 0.14 1.43 5.53 -4.04 -0.02 1.41 16 11 N -0.75 -8.85 5.56 -65.23 -0.36 -9.21 16 12 C 0.70 11.98 8.30 -86.92 -0.72 11.26 16 13 O -0.57 -12.28 14.02 5.30 0.07 -12.21 16 14 N -0.68 -11.73 5.34 -14.27 -0.08 -11.81 16 15 C 0.19 4.08 6.27 -83.76 -0.52 3.56 16 16 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 17 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 18 C -0.24 -6.11 6.94 -38.84 -0.27 -6.38 16 19 C 0.11 2.75 5.18 -106.85 -0.55 2.20 16 20 C -0.45 -12.23 9.61 -37.75 -0.36 -12.59 16 21 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 22 C 0.08 2.18 5.46 -17.34 -0.09 2.09 16 23 N -0.82 -22.05 13.93 55.55 0.77 -21.27 16 24 Si 0.91 21.23 24.37 -169.99 -4.14 17.08 16 25 H -0.27 -6.18 6.76 56.52 0.38 -5.79 16 26 H -0.30 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.24 -5.69 6.51 56.52 0.37 -5.32 16 28 C -0.23 -5.49 9.70 -38.68 -0.38 -5.86 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.33 6.62 -51.93 -0.34 -0.01 16 35 H 0.06 0.35 7.84 -51.93 -0.41 -0.06 16 36 H 0.07 0.39 7.83 -51.93 -0.41 -0.01 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.51 7.76 -51.93 -0.40 0.11 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.47 6.42 -51.93 -0.33 0.14 16 42 H 0.07 0.48 6.91 -51.93 -0.36 0.12 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 45 H 0.39 3.36 8.49 -40.82 -0.35 3.02 16 46 H 0.40 5.30 8.83 -40.82 -0.36 4.94 16 47 H 0.11 2.49 6.40 -52.49 -0.34 2.15 16 48 H 0.10 1.99 8.06 -52.48 -0.42 1.56 16 49 H 0.10 2.43 4.23 -52.48 -0.22 2.21 16 50 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 51 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -31.43 390.95 -10.36 -41.79 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.50 Total: 7.75 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -4.02 Total: -18.02 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.33 Total: -42.29 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.07 Total: -12.21 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.14 Total: 17.08 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.43 -10.36 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.960 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds