Wall clock time and date at job start Tue Mar 31 2020 15:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.05565 * 2 1 4 4 C 1.54271 * 110.03164 * 238.58395 * 2 1 3 5 5 C 1.54885 * 104.19365 * 264.32654 * 4 2 1 6 6 C 1.54887 * 102.75146 * 322.05797 * 5 4 2 7 7 C 1.53878 * 110.02994 * 121.41818 * 2 1 3 8 8 H 1.08991 * 110.03166 * 359.95242 * 7 2 1 9 9 C 1.53002 * 110.02731 * 238.56878 * 7 2 1 10 10 C 1.53001 * 109.46577 * 175.00400 * 9 7 2 11 11 N 1.46501 * 109.46877 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99946 * 179.97438 * 11 10 9 13 13 O 1.21579 * 119.99817 * 359.97438 * 12 11 10 14 14 N 1.34772 * 119.99822 * 180.02562 * 12 11 10 15 15 C 1.39953 * 120.00015 * 174.96675 * 14 12 11 16 16 C 1.39291 * 119.94473 * 326.49413 * 15 14 12 17 17 C 1.38493 * 120.42492 * 179.71952 * 16 15 14 18 18 C 1.37678 * 120.32276 * 0.55352 * 17 16 15 19 19 C 1.40740 * 119.88736 * 359.72651 * 18 17 16 20 20 C 1.41401 * 120.21343 * 180.02562 * 19 18 17 21 21 H 1.08008 * 120.00265 * 151.42264 * 20 19 18 22 22 C 1.39927 * 120.00022 * 331.42072 * 20 19 18 23 23 N 1.30834 * 119.99786 * 166.27562 * 22 20 19 24 24 Si 1.86800 * 120.00324 * 346.27501 * 22 20 19 25 25 H 1.48502 * 109.46836 * 95.30946 * 24 22 20 26 26 H 1.48502 * 109.47501 * 215.31563 * 24 22 20 27 27 H 1.48504 * 109.46653 * 335.31516 * 24 22 20 28 28 C 1.38235 * 119.94915 * 146.76538 * 15 14 12 29 29 H 1.08998 * 109.47603 * 298.58167 * 1 2 3 30 30 H 1.09005 * 109.47289 * 58.58407 * 1 2 3 31 31 H 1.09003 * 109.47181 * 178.58077 * 1 2 3 32 32 H 1.09000 * 109.46795 * 181.41451 * 3 2 1 33 33 H 1.09002 * 109.46769 * 301.41478 * 3 2 1 34 34 H 1.08997 * 109.47171 * 61.41515 * 3 2 1 35 35 H 1.09000 * 110.48435 * 23.00232 * 4 2 1 36 36 H 1.08996 * 110.48419 * 145.51863 * 4 2 1 37 37 H 1.09003 * 110.75940 * 80.37322 * 5 4 2 38 38 H 1.08998 * 110.75670 * 203.55963 * 5 4 2 39 39 H 1.09003 * 110.48915 * 279.26428 * 6 5 4 40 40 H 1.09005 * 110.49155 * 156.62370 * 6 5 4 41 41 H 1.08996 * 109.47483 * 55.00343 * 9 7 2 42 42 H 1.08998 * 109.46823 * 294.99699 * 9 7 2 43 43 H 1.09001 * 109.47198 * 299.99678 * 10 9 7 44 44 H 1.08997 * 109.47715 * 60.00085 * 10 9 7 45 45 H 0.96998 * 120.00139 * 359.97438 * 11 10 9 46 46 H 0.97009 * 120.00138 * 354.96537 * 14 12 11 47 47 H 1.07994 * 119.78722 * 359.97438 * 16 15 14 48 48 H 1.08003 * 119.83455 * 180.25230 * 17 16 15 49 49 H 1.08003 * 120.05574 * 179.74057 * 18 17 16 50 50 H 0.97010 * 119.99685 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.15830 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3280 -2.1901 -0.7192 6 6 2.8874 -1.9407 0.7035 7 6 2.0570 -0.7536 1.2337 8 1 1.2229 -1.1186 1.8328 9 6 2.9408 0.1703 2.0741 10 6 3.3559 -0.5504 3.3583 11 7 4.2026 0.3340 4.1628 12 6 4.6891 -0.0913 5.3456 13 8 4.4248 -1.2088 5.7451 14 7 5.4676 0.7225 6.0858 15 6 5.8860 0.3222 7.3599 16 6 5.0525 -0.4665 8.1496 17 6 5.4589 -0.8731 9.4096 18 6 6.6877 -0.4924 9.9001 19 6 7.5382 0.3091 9.1159 20 6 8.8019 0.7037 9.6127 21 1 9.6156 0.8945 8.9286 22 6 8.9983 0.8469 10.9907 23 7 10.2110 0.9456 11.4718 24 14 7.5292 0.8973 12.1434 25 1 7.2788 -0.4623 12.6857 26 1 7.8096 1.8327 13.2622 27 1 6.3314 1.3615 11.3984 28 6 7.1234 0.7146 7.8349 29 1 -0.3634 0.4916 0.9024 30 1 -0.3634 0.5357 -0.8770 31 1 -0.3634 -1.0274 -0.0255 32 1 3.1443 1.4262 -0.0254 33 1 1.6761 1.9622 -0.8771 34 1 1.7174 1.9472 0.9024 35 1 1.3061 -0.7696 -2.0255 36 1 2.9798 -0.2987 -1.5980 37 1 1.4030 -2.7652 -0.6752 38 1 3.0650 -2.6943 -1.3442 39 1 3.9439 -1.6767 0.6571 40 1 2.7401 -2.8198 1.3310 41 1 2.3851 1.0731 2.3276 42 1 3.8304 0.4391 1.5046 43 1 2.4663 -0.8193 3.9279 44 1 3.9117 -1.4532 3.1050 45 1 4.4131 1.2257 3.8442 46 1 5.7379 1.5858 5.7355 47 1 4.0849 -0.7661 7.7753 48 1 4.8067 -1.4879 10.0121 49 1 6.9986 -0.8086 10.8849 50 1 10.3471 1.0453 12.4271 51 1 7.7684 1.3301 7.2253 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677654121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:10 Heat of formation + Delta-G solvation = -52.984553 kcal Electronic energy + Delta-G solvation = -27510.094063 eV Core-core repulsion = 23793.057804 eV Total energy + Delta-G solvation = -3717.036260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51799 -40.52295 -39.36439 -36.52557 -35.92055 -35.04419 -33.08109 -32.81463 -32.12296 -30.34681 -28.30391 -27.66910 -27.00714 -25.37330 -23.82368 -23.02579 -22.86329 -21.73782 -21.31353 -19.58262 -19.47604 -18.88387 -17.86081 -17.35399 -16.88466 -16.55345 -16.22233 -16.15081 -15.88026 -15.55632 -15.42981 -14.97437 -14.57430 -14.45802 -14.39012 -14.23759 -14.01553 -13.86215 -13.78794 -13.46450 -13.05061 -12.86682 -12.60737 -12.55827 -12.41308 -12.30348 -12.25365 -11.95846 -11.83129 -11.57123 -11.53975 -11.40089 -11.34601 -11.23738 -11.18233 -11.15635 -11.11583 -10.71503 -10.10555 -9.54682 -8.87042 -8.79487 -6.51379 0.72566 0.79987 1.29889 1.43627 1.52490 1.66912 2.11291 2.16319 2.66638 3.25522 3.52412 3.59860 3.66529 3.80401 4.09423 4.22072 4.29183 4.36985 4.46603 4.49424 4.51774 4.52132 4.60074 4.64426 4.72306 4.74667 4.80770 4.86616 4.88732 4.98224 4.98590 4.99379 5.04353 5.09814 5.16187 5.17413 5.20898 5.28882 5.31596 5.34453 5.45790 5.52366 5.53548 5.54612 5.59714 5.65555 5.69069 5.81675 5.94363 6.07477 6.26297 6.41552 6.71393 6.83371 7.07079 7.55365 8.20946 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032933 B = 0.001873 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.017378 B =14944.117578 C =15046.026920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.125 4.125 7 C -0.078 4.078 8 H 0.071 0.929 9 C -0.112 4.112 10 C 0.138 3.862 11 N -0.726 5.726 12 C 0.697 3.303 13 O -0.616 6.616 14 N -0.674 5.674 15 C 0.195 3.805 16 C -0.230 4.230 17 C -0.070 4.070 18 C -0.260 4.260 19 C 0.088 3.912 20 C -0.478 4.478 21 H 0.059 0.941 22 C 0.046 3.954 23 N -0.852 5.852 24 Si 0.968 3.032 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.247 1.247 28 C -0.240 4.240 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.413 0.587 46 H 0.418 0.582 47 H 0.112 0.888 48 H 0.125 0.875 49 H 0.098 0.902 50 H 0.293 0.707 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 1.943 -24.234 30.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.151 4.151 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.097 4.097 8 H 0.089 0.911 9 C -0.150 4.150 10 C 0.014 3.986 11 N -0.383 5.383 12 C 0.397 3.603 13 O -0.496 6.496 14 N -0.322 5.322 15 C 0.100 3.900 16 C -0.251 4.251 17 C -0.089 4.089 18 C -0.279 4.279 19 C 0.085 3.915 20 C -0.507 4.507 21 H 0.078 0.922 22 C -0.168 4.168 23 N -0.478 5.478 24 Si 0.793 3.207 25 H -0.189 1.189 26 H -0.208 1.208 27 H -0.171 1.171 28 C -0.262 4.262 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.250 0.750 46 H 0.256 0.744 47 H 0.130 0.870 48 H 0.143 0.857 49 H 0.116 0.884 50 H 0.104 0.896 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.863 0.996 -23.788 30.375 hybrid contribution 0.405 0.551 0.483 0.837 sum -18.458 1.547 -23.304 29.769 Atomic orbital electron populations 1.21905 0.94179 1.01627 1.01838 1.21165 0.95546 0.95506 0.94081 1.22041 1.01190 0.94871 1.01911 1.22484 1.00942 0.94905 0.96796 1.22471 1.00780 0.97112 0.95880 1.22491 0.99487 0.97705 0.96542 1.21761 0.97454 0.94824 0.95636 0.91077 1.21997 1.00706 0.98996 0.93303 1.21326 0.92987 0.92862 0.91425 1.44976 1.54282 1.19824 1.19196 1.16144 0.79065 0.83849 0.81247 1.90913 1.64615 1.21073 1.72963 1.42442 1.52854 1.21476 1.15402 1.17283 0.92372 0.96838 0.83490 1.20615 1.00888 1.08213 0.95368 1.20793 0.95228 0.97682 0.95185 1.21068 0.98209 1.07342 1.01291 1.17645 0.92015 0.89573 0.92260 1.19427 0.96152 1.42314 0.92844 0.92245 1.26821 0.99357 0.90622 1.00048 1.69697 1.24019 1.37542 1.16586 0.85456 0.79593 0.78723 0.76930 1.18878 1.20793 1.17085 1.20794 0.95434 1.10525 0.99450 0.92709 0.92277 0.92871 0.92053 0.92742 0.91987 0.91362 0.91446 0.91624 0.91512 0.91681 0.92423 0.89584 0.89983 0.92991 0.92990 0.75027 0.74432 0.86971 0.85693 0.88427 0.89627 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.14 71.98 0.59 -0.74 16 2 C -0.06 -0.62 0.94 -51.45 -0.05 -0.67 16 3 C -0.14 -1.22 7.20 71.98 0.52 -0.70 16 4 C -0.11 -1.13 5.90 31.67 0.19 -0.94 16 5 C -0.12 -1.40 6.91 31.88 0.22 -1.18 16 6 C -0.12 -1.64 5.53 31.67 0.18 -1.46 16 7 C -0.08 -0.92 2.58 -10.07 -0.03 -0.94 16 8 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 9 C -0.11 -1.30 3.50 30.60 0.11 -1.19 16 10 C 0.14 2.63 5.53 86.38 0.48 3.11 16 11 N -0.73 -15.30 5.56 -478.54 -2.66 -17.96 16 12 C 0.70 22.50 8.30 179.05 1.49 23.99 16 13 O -0.62 -25.78 14.02 -3.96 -0.06 -25.84 16 14 N -0.67 -21.68 5.34 -317.33 -1.70 -23.37 16 15 C 0.19 8.23 6.27 38.10 0.24 8.47 16 16 C -0.23 -10.19 8.66 22.58 0.20 -9.99 16 17 C -0.07 -3.15 10.02 22.20 0.22 -2.92 16 18 C -0.26 -12.80 6.94 22.75 0.16 -12.64 16 19 C 0.09 4.60 5.18 -21.31 -0.11 4.49 16 20 C -0.48 -26.97 9.61 23.46 0.23 -26.74 16 21 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 22 C 0.05 2.47 5.46 85.25 0.47 2.94 16 23 N -0.85 -47.10 13.93 21.82 0.30 -46.80 16 24 Si 0.97 43.56 24.37 68.60 1.67 45.23 16 25 H -0.26 -11.33 6.76 99.48 0.67 -10.66 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.25 -11.27 6.51 99.48 0.65 -10.63 16 28 C -0.24 -11.10 9.70 22.85 0.22 -10.88 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.51 6.86 -2.39 -0.02 0.49 16 33 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 34 H 0.06 0.50 6.62 -2.39 -0.02 0.49 16 35 H 0.07 0.62 7.84 -2.39 -0.02 0.60 16 36 H 0.07 0.66 7.83 -2.39 -0.02 0.64 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.06 0.89 7.76 -2.39 -0.02 0.88 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.09 0.83 6.42 -2.39 -0.02 0.81 16 42 H 0.08 0.84 6.91 -2.39 -0.02 0.82 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.16 7.51 -2.39 -0.02 1.14 16 45 H 0.41 5.63 8.49 -92.71 -0.79 4.84 16 46 H 0.42 9.97 8.83 -92.70 -0.82 9.15 16 47 H 0.11 4.94 6.40 -2.91 -0.02 4.92 16 48 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 49 H 0.10 4.76 4.23 -2.91 -0.01 4.75 16 50 H 0.29 14.59 8.30 -92.70 -0.77 13.82 16 51 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -68.48 390.95 2.10 -66.38 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.76 Total: 30.37 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 5.30 Total: -28.02 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -4.05 Total: -88.13 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.67 Total: 45.23 kcal Total: -68.48 2.10 -66.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.393 kcal (2) G-P(sol) polarization free energy of solvation -68.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds