Wall clock time and date at job start Tue Mar 31 2020 15:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.05486 * 2 1 4 4 C 1.54374 * 110.04845 * 238.52290 * 2 1 3 5 5 C 1.54883 * 104.19851 * 217.09051 * 4 2 1 6 6 C 1.54893 * 102.74753 * 37.97033 * 5 4 2 7 7 C 1.53878 * 110.03318 * 121.41530 * 2 1 3 8 8 H 1.09000 * 110.02933 * 238.62508 * 7 2 1 9 9 C 1.53008 * 110.02962 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46759 * 184.31188 * 9 7 2 11 11 N 1.46497 * 109.46655 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99542 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00118 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99779 * 180.27603 * 12 11 10 15 15 C 1.39964 * 119.99832 * 174.57592 * 14 12 11 16 16 C 1.39288 * 119.94364 * 145.77105 * 15 14 12 17 17 C 1.38486 * 120.42597 * 179.97438 * 16 15 14 18 18 C 1.37676 * 120.32219 * 359.97438 * 17 16 15 19 19 C 1.40742 * 119.88634 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.21259 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00094 * 205.16683 * 20 19 18 22 22 C 1.39930 * 120.00155 * 25.17065 * 20 19 18 23 23 N 1.30831 * 120.00085 * 16.78714 * 22 20 19 24 24 Si 1.86802 * 120.00153 * 196.79546 * 22 20 19 25 25 H 1.48503 * 109.46949 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47220 * 119.99188 * 24 22 20 27 27 H 1.48496 * 109.46988 * 239.99764 * 24 22 20 28 28 C 1.38231 * 119.94466 * 325.49150 * 15 14 12 29 29 H 1.09002 * 109.47234 * 298.58551 * 1 2 3 30 30 H 1.08998 * 109.46963 * 58.58803 * 1 2 3 31 31 H 1.08998 * 109.46861 * 178.58559 * 1 2 3 32 32 H 1.08996 * 109.47056 * 181.42024 * 3 2 1 33 33 H 1.09006 * 109.46862 * 301.41548 * 3 2 1 34 34 H 1.08993 * 109.47581 * 61.41404 * 3 2 1 35 35 H 1.09002 * 110.45957 * 98.41815 * 4 2 1 36 36 H 1.09007 * 110.62299 * 335.83999 * 4 2 1 37 37 H 1.09002 * 110.75986 * 279.65550 * 5 4 2 38 38 H 1.08997 * 110.91535 * 156.35815 * 5 4 2 39 39 H 1.09002 * 110.48303 * 203.37509 * 6 5 4 40 40 H 1.09000 * 110.59810 * 80.79582 * 6 5 4 41 41 H 1.08995 * 109.46934 * 64.31144 * 9 7 2 42 42 H 1.09000 * 109.47124 * 304.30842 * 9 7 2 43 43 H 1.08995 * 109.47046 * 59.99885 * 10 9 7 44 44 H 1.09000 * 109.47020 * 299.99718 * 10 9 7 45 45 H 0.96997 * 120.00386 * 359.97438 * 11 10 9 46 46 H 0.96994 * 119.99801 * 354.57364 * 14 12 11 47 47 H 1.07998 * 119.78637 * 359.95146 * 16 15 14 48 48 H 1.08001 * 119.83894 * 180.02562 * 17 16 15 49 49 H 1.08003 * 120.06125 * 179.97438 * 18 17 16 50 50 H 0.96998 * 119.99764 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.16260 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7181 6 6 2.8881 -1.9406 0.7047 7 6 2.0571 -0.7535 1.2338 8 1 2.6859 -0.0950 1.8329 9 6 0.8861 -1.2663 2.0745 10 6 1.4217 -1.9187 3.3507 11 7 0.3005 -2.4090 4.1559 12 6 0.5340 -3.0248 5.3319 13 8 1.6752 -3.1729 5.7246 14 7 -0.4973 -3.4809 6.0702 15 6 -0.2523 -4.2195 7.2336 16 6 -1.1071 -4.0986 8.3267 17 6 -0.8744 -4.8250 9.4826 18 6 0.2050 -5.6757 9.5635 19 6 1.0773 -5.8081 8.4670 20 6 2.1878 -6.6802 8.5424 21 1 3.0554 -6.5046 7.9236 22 6 2.1627 -7.7709 9.4186 23 7 1.0258 -8.1826 9.9182 24 14 3.7524 -8.6390 9.8753 25 1 4.8908 -7.9841 9.1820 26 1 3.9560 -8.5588 11.3441 27 1 3.6745 -10.0635 9.4634 28 6 0.8342 -5.0720 7.2938 29 1 -0.3634 0.4917 0.9024 30 1 -0.3633 0.5356 -0.8770 31 1 -0.3633 -1.0274 -0.0254 32 1 3.1443 1.4262 -0.0255 33 1 1.6760 1.9622 -0.8771 34 1 1.7174 1.9472 0.9023 35 1 2.3303 -0.0558 -2.0259 36 1 1.3164 -1.4683 -1.5985 37 1 4.1716 -0.8293 -0.6744 38 1 3.5372 -2.3688 -1.3396 39 1 3.7643 -2.1028 1.3325 40 1 2.2790 -2.8434 0.6610 41 1 0.3210 -2.0007 1.5007 42 1 0.2356 -0.4324 2.3382 43 1 1.9869 -1.1843 3.9245 44 1 2.0723 -2.7525 3.0870 45 1 -0.6099 -2.2906 3.8429 46 1 -1.4091 -3.2974 5.7952 47 1 -1.9565 -3.4338 8.2726 48 1 -1.5435 -4.7242 10.3244 49 1 0.3827 -6.2398 10.4672 50 1 1.0083 -8.9389 10.5254 51 1 1.4951 -5.1694 6.4452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677654122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:14 Heat of formation + Delta-G solvation = -36.856633 kcal Electronic energy + Delta-G solvation = -27638.402899 eV Core-core repulsion = 23922.065998 eV Total energy + Delta-G solvation = -3716.336901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.14584 -39.62490 -37.33078 -35.17843 -34.27025 -33.00370 -32.52790 -31.75475 -29.74913 -28.20325 -27.80077 -26.62706 -25.22809 -24.69220 -22.69915 -21.54537 -20.79717 -20.67292 -19.97406 -18.51633 -17.83281 -17.54119 -16.08276 -15.73092 -15.55351 -15.42561 -14.98293 -14.66841 -14.54505 -14.12036 -14.02486 -13.82820 -13.65061 -13.27180 -13.24178 -12.99365 -12.81153 -12.40710 -12.09120 -11.94576 -11.73130 -11.57569 -11.57111 -11.23649 -11.13103 -11.07257 -10.92201 -10.85421 -10.82990 -10.74382 -10.59882 -10.51654 -10.40052 -10.12658 -9.63768 -9.42578 -9.06196 -8.94721 -8.81031 -7.37617 -6.82143 -6.64247 -4.26961 2.78447 2.93321 3.13249 3.13625 3.20920 3.26198 3.80196 4.01664 4.18614 4.23743 4.34968 4.65151 4.71752 4.82470 4.91329 4.94346 5.03591 5.07265 5.15228 5.20668 5.35764 5.36537 5.46183 5.48377 5.55653 5.65048 5.67215 5.69253 5.76029 5.78487 5.86112 5.91896 5.97625 6.03499 6.10079 6.11424 6.23114 6.30246 6.46458 6.66456 6.86498 6.88057 7.11135 7.16125 7.31298 7.42798 7.76212 7.90909 8.06745 8.18149 8.32084 8.52170 8.73661 8.97419 9.04661 9.13223 10.27857 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.002162 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.419916 B =12949.686053 C =14207.063123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.065 4.065 3 C -0.138 4.138 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.079 4.079 8 H 0.076 0.924 9 C -0.125 4.125 10 C 0.138 3.862 11 N -0.752 5.752 12 C 0.697 3.303 13 O -0.567 6.567 14 N -0.683 5.683 15 C 0.170 3.830 16 C -0.263 4.263 17 C -0.092 4.092 18 C -0.174 4.174 19 C 0.119 3.881 20 C -0.457 4.457 21 H 0.078 0.922 22 C 0.075 3.925 23 N -0.797 5.797 24 Si 0.907 3.093 25 H -0.260 1.260 26 H -0.272 1.272 27 H -0.275 1.275 28 C -0.209 4.209 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.391 0.609 46 H 0.393 0.607 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.119 0.881 50 H 0.278 0.722 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 14.239 -19.578 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.098 4.098 8 H 0.095 0.905 9 C -0.163 4.163 10 C 0.013 3.987 11 N -0.409 5.409 12 C 0.397 3.603 13 O -0.442 6.442 14 N -0.329 5.329 15 C 0.077 3.923 16 C -0.285 4.285 17 C -0.111 4.111 18 C -0.194 4.194 19 C 0.116 3.884 20 C -0.487 4.487 21 H 0.096 0.904 22 C -0.142 4.142 23 N -0.422 5.422 24 Si 0.732 3.268 25 H -0.184 1.184 26 H -0.198 1.198 27 H -0.201 1.201 28 C -0.231 4.231 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.224 0.776 46 H 0.226 0.774 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.136 0.864 50 H 0.089 0.911 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.010 13.921 -19.103 23.659 hybrid contribution -0.344 -0.278 -0.046 0.444 sum -1.354 13.643 -19.149 23.551 Atomic orbital electron populations 1.22036 0.94589 1.01861 1.01510 1.21198 0.95416 0.95198 0.94691 1.21904 1.00924 0.95171 1.01564 1.22499 0.97361 0.98694 0.96690 1.22472 0.97587 0.99769 0.96460 1.22492 0.99727 0.97778 0.96044 1.21779 0.95976 0.96760 0.95314 0.90542 1.22053 0.98393 1.00546 0.95267 1.21197 0.88503 0.98544 0.90412 1.45136 1.09735 1.64654 1.21397 1.15992 0.85338 0.78638 0.80324 1.90976 1.20316 1.61546 1.71366 1.42596 1.07608 1.56732 1.25963 1.17229 0.97905 0.92864 0.84277 1.20008 1.04167 1.09589 0.94758 1.20438 0.97712 0.97243 0.95730 1.21328 0.97161 1.01227 0.99636 1.17502 0.91732 0.89660 0.89470 1.19604 1.01772 1.07799 1.19521 0.90378 1.25899 0.97312 0.96791 0.94183 1.69842 1.26211 1.21803 1.24390 0.86282 0.82565 0.78956 0.79040 1.18376 1.19756 1.20083 1.21000 1.00284 1.02680 0.99114 0.92278 0.93135 0.92241 0.92600 0.92862 0.92636 0.91896 0.91600 0.91667 0.91716 0.91397 0.91291 0.91039 0.91001 0.91990 0.91653 0.77587 0.77361 0.89411 0.89101 0.86362 0.91089 0.87570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 7.21 37.16 0.27 -0.61 16 2 C -0.06 -0.43 0.94 -153.33 -0.14 -0.58 16 3 C -0.14 -0.87 8.15 37.16 0.30 -0.57 16 4 C -0.11 -0.75 5.90 -25.02 -0.15 -0.90 16 5 C -0.13 -0.88 6.91 -24.74 -0.17 -1.05 16 6 C -0.12 -1.00 5.50 -25.08 -0.14 -1.13 16 7 C -0.08 -0.61 2.59 -89.50 -0.23 -0.84 16 8 H 0.08 0.62 7.67 -51.93 -0.40 0.23 16 9 C -0.12 -1.00 3.50 -26.73 -0.09 -1.09 16 10 C 0.14 1.62 5.52 -4.04 -0.02 1.59 16 11 N -0.75 -9.86 5.56 -65.23 -0.36 -10.22 16 12 C 0.70 13.13 8.29 -86.91 -0.72 12.41 16 13 O -0.57 -13.51 14.10 5.29 0.07 -13.44 16 14 N -0.68 -12.67 5.34 -14.27 -0.08 -12.75 16 15 C 0.17 3.98 6.25 -83.76 -0.52 3.46 16 16 C -0.26 -5.97 9.97 -39.10 -0.39 -6.36 16 17 C -0.09 -2.21 10.02 -39.70 -0.40 -2.61 16 18 C -0.17 -4.68 8.69 -38.84 -0.34 -5.01 16 19 C 0.12 3.38 5.57 -106.85 -0.59 2.78 16 20 C -0.46 -12.88 9.05 -37.74 -0.34 -13.22 16 21 H 0.08 2.18 7.90 -52.48 -0.41 1.77 16 22 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 23 N -0.80 -21.16 10.94 55.55 0.61 -20.55 16 24 Si 0.91 19.50 29.59 -169.99 -5.03 14.47 16 25 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 28 C -0.21 -5.62 8.39 -38.69 -0.32 -5.94 16 29 H 0.06 0.36 6.63 -51.93 -0.34 0.01 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 6.84 -51.93 -0.36 0.01 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.38 7.84 -51.93 -0.41 -0.02 16 36 H 0.07 0.43 7.85 -51.93 -0.41 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 41 H 0.07 0.54 6.88 -51.93 -0.36 0.18 16 42 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.86 7.48 -51.93 -0.39 0.47 16 45 H 0.39 3.77 8.49 -40.82 -0.35 3.42 16 46 H 0.39 5.60 8.84 -40.82 -0.36 5.24 16 47 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 49 H 0.12 3.26 6.17 -52.48 -0.32 2.93 16 50 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 51 H 0.11 2.97 6.48 -52.49 -0.34 2.63 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -32.13 397.31 -11.44 -43.57 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -8.55 Total: 10.73 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -4.10 Total: -17.80 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.17 Total: -43.52 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.07 Total: -13.44 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.13 -11.44 -43.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.712 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds