Wall clock time and date at job start Tue Mar 31 2020 15:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.05486 * 2 1 4 4 C 1.54374 * 110.04845 * 238.52290 * 2 1 3 5 5 C 1.54883 * 104.19851 * 217.09051 * 4 2 1 6 6 C 1.54893 * 102.74753 * 37.97033 * 5 4 2 7 7 C 1.53878 * 110.03318 * 121.41530 * 2 1 3 8 8 H 1.09000 * 110.02933 * 238.62508 * 7 2 1 9 9 C 1.53008 * 110.02962 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46759 * 184.31188 * 9 7 2 11 11 N 1.46497 * 109.46655 * 179.97438 * 10 9 7 12 12 C 1.34780 * 119.99542 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00118 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99779 * 180.27603 * 12 11 10 15 15 C 1.39964 * 119.99832 * 174.57592 * 14 12 11 16 16 C 1.39288 * 119.94364 * 145.77105 * 15 14 12 17 17 C 1.38486 * 120.42597 * 179.97438 * 16 15 14 18 18 C 1.37676 * 120.32219 * 359.97438 * 17 16 15 19 19 C 1.40742 * 119.88634 * 0.02562 * 18 17 16 20 20 C 1.41406 * 120.21259 * 180.02562 * 19 18 17 21 21 H 1.08006 * 120.00094 * 205.16683 * 20 19 18 22 22 C 1.39930 * 120.00155 * 25.17065 * 20 19 18 23 23 N 1.30831 * 120.00085 * 16.78714 * 22 20 19 24 24 Si 1.86802 * 120.00153 * 196.79546 * 22 20 19 25 25 H 1.48503 * 109.46949 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47220 * 119.99188 * 24 22 20 27 27 H 1.48496 * 109.46988 * 239.99764 * 24 22 20 28 28 C 1.38231 * 119.94466 * 325.49150 * 15 14 12 29 29 H 1.09002 * 109.47234 * 298.58551 * 1 2 3 30 30 H 1.08998 * 109.46963 * 58.58803 * 1 2 3 31 31 H 1.08998 * 109.46861 * 178.58559 * 1 2 3 32 32 H 1.08996 * 109.47056 * 181.42024 * 3 2 1 33 33 H 1.09006 * 109.46862 * 301.41548 * 3 2 1 34 34 H 1.08993 * 109.47581 * 61.41404 * 3 2 1 35 35 H 1.09002 * 110.45957 * 98.41815 * 4 2 1 36 36 H 1.09007 * 110.62299 * 335.83999 * 4 2 1 37 37 H 1.09002 * 110.75986 * 279.65550 * 5 4 2 38 38 H 1.08997 * 110.91535 * 156.35815 * 5 4 2 39 39 H 1.09002 * 110.48303 * 203.37509 * 6 5 4 40 40 H 1.09000 * 110.59810 * 80.79582 * 6 5 4 41 41 H 1.08995 * 109.46934 * 64.31144 * 9 7 2 42 42 H 1.09000 * 109.47124 * 304.30842 * 9 7 2 43 43 H 1.08995 * 109.47046 * 59.99885 * 10 9 7 44 44 H 1.09000 * 109.47020 * 299.99718 * 10 9 7 45 45 H 0.96997 * 120.00386 * 359.97438 * 11 10 9 46 46 H 0.96994 * 119.99801 * 354.57364 * 14 12 11 47 47 H 1.07998 * 119.78637 * 359.95146 * 16 15 14 48 48 H 1.08001 * 119.83894 * 180.02562 * 17 16 15 49 49 H 1.08003 * 120.06125 * 179.97438 * 18 17 16 50 50 H 0.96998 * 119.99764 * 179.97438 * 23 22 20 51 51 H 1.07999 * 120.16260 * 0.02562 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2368 5 6 3.3146 -1.5015 -0.7181 6 6 2.8881 -1.9406 0.7047 7 6 2.0571 -0.7535 1.2338 8 1 2.6859 -0.0950 1.8329 9 6 0.8861 -1.2663 2.0745 10 6 1.4217 -1.9187 3.3507 11 7 0.3005 -2.4090 4.1559 12 6 0.5340 -3.0248 5.3319 13 8 1.6752 -3.1729 5.7246 14 7 -0.4973 -3.4809 6.0702 15 6 -0.2523 -4.2195 7.2336 16 6 -1.1071 -4.0986 8.3267 17 6 -0.8744 -4.8250 9.4826 18 6 0.2050 -5.6757 9.5635 19 6 1.0773 -5.8081 8.4670 20 6 2.1878 -6.6802 8.5424 21 1 3.0554 -6.5046 7.9236 22 6 2.1627 -7.7709 9.4186 23 7 1.0258 -8.1826 9.9182 24 14 3.7524 -8.6390 9.8753 25 1 4.8908 -7.9841 9.1820 26 1 3.9560 -8.5588 11.3441 27 1 3.6745 -10.0635 9.4634 28 6 0.8342 -5.0720 7.2938 29 1 -0.3634 0.4917 0.9024 30 1 -0.3633 0.5356 -0.8770 31 1 -0.3633 -1.0274 -0.0254 32 1 3.1443 1.4262 -0.0255 33 1 1.6760 1.9622 -0.8771 34 1 1.7174 1.9472 0.9023 35 1 2.3303 -0.0558 -2.0259 36 1 1.3164 -1.4683 -1.5985 37 1 4.1716 -0.8293 -0.6744 38 1 3.5372 -2.3688 -1.3396 39 1 3.7643 -2.1028 1.3325 40 1 2.2790 -2.8434 0.6610 41 1 0.3210 -2.0007 1.5007 42 1 0.2356 -0.4324 2.3382 43 1 1.9869 -1.1843 3.9245 44 1 2.0723 -2.7525 3.0870 45 1 -0.6099 -2.2906 3.8429 46 1 -1.4091 -3.2974 5.7952 47 1 -1.9565 -3.4338 8.2726 48 1 -1.5435 -4.7242 10.3244 49 1 0.3827 -6.2398 10.4672 50 1 1.0083 -8.9389 10.5254 51 1 1.4951 -5.1694 6.4452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677654122.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:13 Heat of formation + Delta-G solvation = -55.048808 kcal Electronic energy + Delta-G solvation = -27639.191770 eV Core-core repulsion = 23922.065998 eV Total energy + Delta-G solvation = -3717.125772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45330 -40.51132 -39.13991 -36.49872 -35.99538 -34.83455 -33.08851 -32.73082 -31.73660 -29.86279 -28.30081 -27.62758 -27.20200 -25.36454 -23.70908 -23.02113 -22.67866 -21.67478 -21.30010 -19.63716 -19.31480 -18.87839 -17.57969 -17.09736 -16.78126 -16.47158 -16.32569 -16.12704 -15.81966 -15.57535 -15.12950 -14.91384 -14.69358 -14.47769 -14.24465 -14.09161 -13.85495 -13.79145 -13.51357 -13.13011 -12.96517 -12.89764 -12.78621 -12.56125 -12.32199 -12.25947 -12.17276 -12.00696 -11.84197 -11.59859 -11.51213 -11.41264 -11.31531 -11.24001 -11.17675 -11.12466 -10.96293 -10.77768 -10.09480 -9.38035 -8.71735 -8.57547 -6.36002 0.93372 1.03943 1.35942 1.47997 1.51642 1.72407 2.19760 2.22003 2.75112 3.31100 3.58899 3.65651 3.75231 3.80098 4.08595 4.20511 4.36133 4.45198 4.48569 4.48999 4.51032 4.62651 4.65533 4.70605 4.73615 4.79385 4.89040 4.98501 4.99934 5.06291 5.08671 5.11201 5.13777 5.14852 5.16559 5.19992 5.23641 5.28423 5.30599 5.33940 5.46159 5.51735 5.53309 5.54043 5.65362 5.74818 5.84633 6.07328 6.12598 6.21780 6.38104 6.70031 6.95302 7.02354 7.13652 7.62021 8.34191 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.017568 B = 0.002162 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.419916 B =12949.686053 C =14207.063123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.127 4.127 7 C -0.078 4.078 8 H 0.069 0.931 9 C -0.110 4.110 10 C 0.137 3.863 11 N -0.725 5.725 12 C 0.692 3.308 13 O -0.622 6.622 14 N -0.670 5.670 15 C 0.177 3.823 16 C -0.251 4.251 17 C -0.090 4.090 18 C -0.199 4.199 19 C 0.088 3.912 20 C -0.502 4.502 21 H 0.060 0.940 22 C 0.037 3.963 23 N -0.822 5.822 24 Si 0.981 3.019 25 H -0.267 1.267 26 H -0.258 1.258 27 H -0.261 1.261 28 C -0.238 4.238 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.414 0.586 46 H 0.418 0.582 47 H 0.133 0.867 48 H 0.125 0.875 49 H 0.105 0.895 50 H 0.289 0.711 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 15.503 -20.473 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.195 4.195 4 C -0.150 4.150 5 C -0.162 4.162 6 C -0.164 4.164 7 C -0.098 4.098 8 H 0.088 0.912 9 C -0.147 4.147 10 C 0.013 3.987 11 N -0.382 5.382 12 C 0.392 3.608 13 O -0.501 6.501 14 N -0.319 5.319 15 C 0.083 3.917 16 C -0.273 4.273 17 C -0.109 4.109 18 C -0.219 4.219 19 C 0.085 3.915 20 C -0.532 4.532 21 H 0.078 0.922 22 C -0.177 4.177 23 N -0.448 5.448 24 Si 0.802 3.198 25 H -0.191 1.191 26 H -0.182 1.182 27 H -0.185 1.185 28 C -0.260 4.260 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.250 0.750 46 H 0.256 0.744 47 H 0.151 0.849 48 H 0.143 0.857 49 H 0.123 0.877 50 H 0.100 0.900 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.003 15.226 -20.060 25.362 hybrid contribution 0.170 -0.562 0.144 0.605 sum -2.833 14.663 -19.916 24.894 Atomic orbital electron populations 1.22035 0.93819 1.02109 1.02016 1.21174 0.95994 0.95159 0.93872 1.21899 1.00738 0.94957 1.01918 1.22495 0.96941 0.98767 0.96806 1.22469 0.98053 0.99976 0.95696 1.22498 0.99301 0.97911 0.96717 1.21771 0.95704 0.96508 0.95771 0.91209 1.21988 0.98627 1.00972 0.93160 1.21308 0.88054 0.97702 0.91599 1.44920 1.11477 1.62610 1.19232 1.16259 0.84433 0.78702 0.81414 1.90955 1.22638 1.63610 1.72903 1.42333 1.09001 1.55848 1.24687 1.17293 0.96511 0.91789 0.86134 1.20446 1.04589 1.08853 0.93371 1.20831 0.96852 0.95816 0.97354 1.21296 0.98750 1.02993 0.98905 1.17846 0.92587 0.90482 0.90543 1.19732 1.01887 1.09855 1.21685 0.92198 1.26695 1.00951 0.96783 0.93315 1.69862 1.27985 1.22383 1.24549 0.85185 0.77482 0.77991 0.79158 1.19102 1.18211 1.18524 1.20941 1.01846 1.04884 0.98303 0.91917 0.92546 0.92094 0.92971 0.92081 0.92679 0.91179 0.91382 0.91613 0.91527 0.92785 0.91811 0.89912 0.89319 0.93306 0.93523 0.74952 0.74418 0.84932 0.85740 0.87738 0.90001 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.21 71.98 0.52 -0.85 16 2 C -0.06 -0.70 0.94 -51.42 -0.05 -0.75 16 3 C -0.14 -1.50 8.15 71.98 0.59 -0.91 16 4 C -0.11 -1.28 5.90 31.70 0.19 -1.10 16 5 C -0.12 -1.67 6.91 31.88 0.22 -1.45 16 6 C -0.13 -2.05 5.50 31.67 0.17 -1.87 16 7 C -0.08 -1.12 2.59 -10.07 -0.03 -1.15 16 8 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 9 C -0.11 -1.55 3.50 30.60 0.11 -1.45 16 10 C 0.14 3.17 5.52 86.38 0.48 3.65 16 11 N -0.73 -18.01 5.56 -478.53 -2.66 -20.67 16 12 C 0.69 25.91 8.29 179.05 1.48 27.40 16 13 O -0.62 -30.79 14.10 -3.99 -0.06 -30.85 16 14 N -0.67 -23.88 5.34 -317.31 -1.70 -25.57 16 15 C 0.18 8.22 6.25 38.09 0.24 8.45 16 16 C -0.25 -10.75 9.97 22.58 0.23 -10.53 16 17 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 18 C -0.20 -10.99 8.69 22.75 0.20 -10.79 16 19 C 0.09 5.24 5.57 -21.31 -0.12 5.12 16 20 C -0.50 -29.99 9.05 23.46 0.21 -29.78 16 21 H 0.06 3.63 7.90 -2.91 -0.02 3.61 16 22 C 0.04 2.01 5.16 85.25 0.44 2.45 16 23 N -0.82 -44.64 10.94 21.82 0.24 -44.40 16 24 Si 0.98 41.01 29.59 68.60 2.03 43.04 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 27 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 28 C -0.24 -13.35 8.39 22.85 0.19 -13.15 16 29 H 0.06 0.56 6.63 -2.39 -0.02 0.55 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.58 6.84 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.72 7.84 -2.39 -0.02 0.70 16 36 H 0.07 0.76 7.85 -2.38 -0.02 0.74 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.08 7.77 -2.39 -0.02 1.07 16 41 H 0.08 1.04 6.88 -2.39 -0.02 1.02 16 42 H 0.09 1.01 6.47 -2.39 -0.02 1.00 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.05 1.27 7.48 -2.39 -0.02 1.26 16 45 H 0.41 6.72 8.49 -92.71 -0.79 5.93 16 46 H 0.42 10.55 8.84 -92.71 -0.82 9.74 16 47 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 48 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 49 H 0.10 5.94 6.17 -2.91 -0.02 5.92 16 50 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 51 H 0.08 4.85 6.48 -2.91 -0.02 4.83 16 Total: -1.00 -74.41 397.31 2.47 -71.94 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.67 Total: 37.17 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 5.29 Total: -30.66 kcal Atomic # 7 Polarization: -86.53 SS G_CDS: -4.12 Total: -90.65 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -0.06 Total: -30.85 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -74.41 2.47 -71.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677654122.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.894 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds