Wall clock time and date at job start Tue Mar 31 2020 16:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47226 * 2 1 4 4 C 1.38243 * 119.99951 * 90.00039 * 3 2 1 5 5 C 1.38232 * 119.99990 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00215 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00292 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46914 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47348 * 119.99781 * 7 6 5 10 10 C 1.52993 * 109.47019 * 240.00168 * 7 6 5 11 11 C 1.50705 * 109.47155 * 174.99533 * 10 7 6 12 12 O 1.21278 * 119.99842 * 0.02562 * 11 10 7 13 13 N 1.34774 * 120.00036 * 179.97438 * 11 10 7 14 14 C 1.46503 * 119.99861 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84888 * 336.19467 * 14 13 11 16 16 C 1.54051 * 113.61970 * 107.50636 * 14 13 11 17 17 C 1.53786 * 86.98423 * 139.97547 * 16 14 13 18 18 H 1.08999 * 113.61284 * 219.97824 * 17 16 14 19 19 N 1.46506 * 113.61071 * 89.16307 * 17 16 14 20 20 C 1.36931 * 119.99939 * 105.86267 * 19 17 16 21 21 H 1.08000 * 120.00644 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99715 * 179.97438 * 20 19 17 23 23 N 1.31611 * 120.00107 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99746 * 179.72150 * 22 20 19 25 25 H 1.48506 * 109.46826 * 60.00664 * 24 22 20 26 26 H 1.48497 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47422 * 300.00472 * 24 22 20 28 28 C 1.53778 * 87.17467 * 334.57247 * 17 16 14 29 29 C 1.38236 * 119.99827 * 0.25345 * 6 5 4 30 30 C 1.38233 * 120.00254 * 269.98253 * 3 2 1 31 31 H 1.08993 * 109.47431 * 59.99849 * 1 2 3 32 32 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46516 * 299.99427 * 1 2 3 34 34 H 1.09005 * 109.47255 * 240.00542 * 2 1 3 35 35 H 1.08996 * 109.47832 * 120.00465 * 2 1 3 36 36 H 1.07994 * 119.99483 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99681 * 180.02562 * 5 4 3 38 38 H 1.08999 * 109.47130 * 179.97438 * 9 7 6 39 39 H 1.09001 * 109.47055 * 300.00286 * 9 7 6 40 40 H 1.09001 * 109.46824 * 60.00298 * 9 7 6 41 41 H 1.09004 * 109.47575 * 54.99734 * 10 7 6 42 42 H 1.09006 * 109.47471 * 294.99597 * 10 7 6 43 43 H 0.97004 * 120.00464 * 359.97438 * 13 11 10 44 44 H 1.09000 * 113.61438 * 25.47489 * 16 14 13 45 45 H 1.08997 * 113.69655 * 254.49255 * 16 14 13 46 46 H 0.97000 * 119.99307 * 285.86061 * 19 17 16 47 47 H 0.97000 * 120.00330 * 179.97438 * 23 22 20 48 48 H 1.08996 * 113.61908 * 140.02474 * 28 17 16 49 49 H 1.09004 * 113.61191 * 270.92766 * 28 17 16 50 50 H 1.08003 * 119.99720 * 179.72909 * 29 6 5 51 51 H 1.07998 * 120.00399 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4480 0.0001 8 1 3.5784 5.7904 1.0278 9 6 4.8047 5.5125 -0.7211 10 6 2.4491 6.3452 -0.7210 11 6 2.8898 7.7824 -0.6146 12 8 3.9098 8.0615 -0.0209 13 7 2.1510 8.7575 -1.1802 14 6 2.5798 10.1546 -1.0772 15 1 3.2296 10.3359 -0.2210 16 6 3.1210 10.7331 -2.3984 17 6 2.3775 12.0308 -2.0404 18 1 1.8950 12.5072 -2.8938 19 7 3.1777 12.9651 -1.2446 20 6 3.6890 14.0951 -1.8250 21 1 3.5028 14.2975 -2.8694 22 6 4.4467 14.9806 -1.0709 23 7 4.6741 14.7338 0.2018 24 14 5.1507 16.5181 -1.8645 25 1 4.0428 17.3540 -2.3930 26 1 5.9156 17.2912 -0.8533 27 1 6.0537 16.1314 -2.9781 28 6 1.4259 11.1637 -1.1994 29 6 2.7186 3.3775 -1.1970 30 6 2.2631 2.0723 -1.1971 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8935 -0.5139 0.8899 36 1 2.0824 1.5634 2.1324 37 1 2.9045 3.8844 2.1326 38 1 5.1678 6.5402 -0.7215 39 1 5.5226 4.8732 -0.2072 40 1 4.6836 5.1699 -1.7488 41 1 1.4672 6.2314 -0.2616 42 1 2.3941 6.0589 -1.7714 43 1 1.3358 8.5342 -1.6561 44 1 2.7291 10.2360 -3.2857 45 1 4.2054 10.8421 -2.4172 46 1 3.3452 12.7832 -0.3067 47 1 5.2039 15.3523 0.7287 48 1 1.1425 11.6200 -0.2510 49 1 0.5713 10.7840 -1.7596 50 1 2.8945 3.8882 -2.1323 51 1 2.0838 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690290198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:55 Heat of formation + Delta-G solvation = -5.022384 kcal Electronic energy + Delta-G solvation = -27076.930584 eV Core-core repulsion = 23361.974120 eV Total energy + Delta-G solvation = -3714.956464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29604 -39.57793 -38.10095 -35.90150 -34.00477 -33.26710 -32.61020 -31.17325 -29.83630 -29.03521 -27.84905 -25.09552 -24.74558 -24.16910 -23.06537 -22.83867 -21.81657 -20.59184 -19.87286 -18.65927 -17.39721 -17.19536 -16.19151 -16.15092 -15.73142 -15.29454 -15.23208 -14.84865 -14.33959 -14.16765 -14.03065 -13.94601 -13.65971 -13.39300 -13.30829 -13.20950 -12.97140 -12.67808 -12.48210 -12.07990 -12.01911 -11.96208 -11.72064 -11.61852 -11.55757 -11.26697 -11.24664 -10.93409 -10.85032 -10.79738 -10.77388 -10.25112 -10.15864 -9.85315 -9.70082 -9.45468 -9.15137 -8.90162 -8.73150 -8.64403 -6.99487 -5.78063 -3.08124 1.08499 1.17176 2.79543 3.34523 3.44263 3.48522 3.49853 3.53226 4.38664 4.45732 4.56756 4.57302 4.65991 4.77245 4.85654 4.95362 4.97621 5.01037 5.12364 5.16617 5.23740 5.25210 5.28273 5.34723 5.41246 5.48562 5.49407 5.49997 5.56644 5.61649 5.75037 5.81813 5.84561 5.88536 5.92823 6.01418 6.05159 6.10082 6.18476 6.23358 6.34502 6.36082 6.41732 6.49043 6.65135 6.74570 6.77680 6.81595 7.05884 7.69029 7.72550 8.40028 8.43303 9.50757 10.07267 10.41343 11.44036 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.001730 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.021753 B =16179.898680 C =16453.002001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.113 4.113 6 C -0.076 4.076 7 C -0.035 4.035 8 H 0.086 0.914 9 C -0.149 4.149 10 C -0.133 4.133 11 C 0.508 3.492 12 O -0.535 6.535 13 N -0.720 5.720 14 C 0.125 3.875 15 H 0.113 0.887 16 C -0.183 4.183 17 C 0.171 3.829 18 H 0.067 0.933 19 N -0.705 5.705 20 C -0.246 4.246 21 H 0.072 0.928 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.164 4.164 29 C -0.111 4.111 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.395 0.605 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -30.004 -2.009 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.054 4.054 8 H 0.105 0.895 9 C -0.206 4.206 10 C -0.174 4.174 11 C 0.294 3.706 12 O -0.412 6.412 13 N -0.370 5.370 14 C 0.021 3.979 15 H 0.131 0.869 16 C -0.226 4.226 17 C 0.058 3.942 18 H 0.085 0.915 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.204 4.204 29 C -0.129 4.129 30 C -0.135 4.135 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.879 -29.605 -1.649 30.952 hybrid contribution 0.045 0.584 -0.341 0.678 sum -8.834 -29.021 -1.990 30.401 Atomic orbital electron populations 1.21749 0.94741 1.01635 1.02271 1.20534 0.96176 0.92791 1.02708 1.19875 0.99617 0.96232 0.93273 1.20999 1.00107 0.94895 0.97454 1.21099 0.99452 0.94791 0.97710 1.19923 0.98674 0.95886 0.93169 1.19875 0.94685 0.89485 1.01368 0.89535 1.21967 0.95559 1.03989 0.99115 1.21762 1.00678 0.92048 1.02871 1.20623 0.84002 0.87435 0.78510 1.90699 1.24487 1.83828 1.42138 1.46169 1.27209 1.07401 1.56192 1.22670 0.97579 0.77565 1.00048 0.86922 1.24347 1.02221 1.00228 0.95804 1.20915 0.91012 0.88441 0.93850 0.91545 1.42180 1.59642 1.22405 1.10162 1.19223 1.26010 0.97829 0.94684 0.90996 1.24778 1.00845 0.99252 0.95830 1.69653 1.43815 1.38016 1.06282 0.86239 0.78790 0.82928 0.78028 1.21194 1.21662 1.21202 1.23870 0.97029 0.97607 1.01870 1.20998 0.99524 0.94672 0.97744 1.20993 1.00200 0.94882 0.97419 0.92541 0.92478 0.92548 0.91168 0.91173 0.86304 0.86011 0.89943 0.92850 0.93248 0.89048 0.89037 0.77137 0.91387 0.91086 0.77983 0.93325 0.90932 0.90376 0.86108 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.90 37.16 0.37 -0.41 16 2 C -0.08 -0.49 6.06 -27.88 -0.17 -0.66 16 3 C -0.09 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 5 C -0.11 -1.02 9.67 -39.59 -0.38 -1.40 16 6 C -0.08 -0.72 4.78 -104.62 -0.50 -1.22 16 7 C -0.04 -0.37 2.21 -91.77 -0.20 -0.57 16 8 H 0.09 1.01 7.69 -51.93 -0.40 0.61 16 9 C -0.15 -1.68 8.75 37.16 0.33 -1.36 16 10 C -0.13 -1.29 4.91 -27.88 -0.14 -1.42 16 11 C 0.51 6.95 7.55 -10.98 -0.08 6.87 16 12 O -0.53 -9.66 13.56 5.56 0.08 -9.58 16 13 N -0.72 -9.21 5.36 -52.87 -0.28 -9.50 16 14 C 0.13 2.06 4.13 -66.97 -0.28 1.78 16 15 H 0.11 2.26 7.46 -51.93 -0.39 1.87 16 16 C -0.18 -3.23 7.70 -25.77 -0.20 -3.42 16 17 C 0.17 3.34 4.55 -67.11 -0.31 3.03 16 18 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 19 N -0.71 -17.72 5.31 -52.63 -0.28 -17.99 16 20 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -28.32 13.06 55.49 0.72 -27.59 16 24 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C -0.16 -2.58 7.57 -25.92 -0.20 -2.78 16 29 C -0.11 -0.95 8.76 -39.58 -0.35 -1.30 16 30 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.12 0.99 7.95 -52.48 -0.42 0.57 16 38 H 0.08 1.16 5.95 -51.93 -0.31 0.85 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.49 7.41 -51.93 -0.38 0.10 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.72 7.56 -51.93 -0.39 0.33 16 43 H 0.40 3.72 8.73 -40.82 -0.36 3.37 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.39 10.38 7.90 -40.82 -0.32 10.06 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 50 H 0.12 0.89 7.16 -52.48 -0.38 0.52 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 412.31 15.07 6.21 6.21 Total: -1.00 -32.47 412.31 -11.03 -43.50 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -8.80 Total: 11.69 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.66 Total: -14.15 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.16 Total: -55.09 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.47 -11.03 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690290198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.481 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds