Wall clock time and date at job start Tue Mar 31 2020 16:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.47226 * 2 1 4 4 C 1.38243 * 119.99951 * 90.00039 * 3 2 1 5 5 C 1.38232 * 119.99990 * 179.97438 * 4 3 2 6 6 C 1.38233 * 120.00215 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.00292 * 179.97438 * 6 5 4 8 8 H 1.09001 * 109.46914 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47348 * 119.99781 * 7 6 5 10 10 C 1.52993 * 109.47019 * 240.00168 * 7 6 5 11 11 C 1.50705 * 109.47155 * 174.99533 * 10 7 6 12 12 O 1.21278 * 119.99842 * 0.02562 * 11 10 7 13 13 N 1.34774 * 120.00036 * 179.97438 * 11 10 7 14 14 C 1.46503 * 119.99861 * 180.02562 * 13 11 10 15 15 H 1.09001 * 112.84888 * 336.19467 * 14 13 11 16 16 C 1.54051 * 113.61970 * 107.50636 * 14 13 11 17 17 C 1.53786 * 86.98423 * 139.97547 * 16 14 13 18 18 H 1.08999 * 113.61284 * 219.97824 * 17 16 14 19 19 N 1.46506 * 113.61071 * 89.16307 * 17 16 14 20 20 C 1.36931 * 119.99939 * 105.86267 * 19 17 16 21 21 H 1.08000 * 120.00644 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99715 * 179.97438 * 20 19 17 23 23 N 1.31611 * 120.00107 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99746 * 179.72150 * 22 20 19 25 25 H 1.48506 * 109.46826 * 60.00664 * 24 22 20 26 26 H 1.48497 * 109.47051 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47422 * 300.00472 * 24 22 20 28 28 C 1.53778 * 87.17467 * 334.57247 * 17 16 14 29 29 C 1.38236 * 119.99827 * 0.25345 * 6 5 4 30 30 C 1.38233 * 120.00254 * 269.98253 * 3 2 1 31 31 H 1.08993 * 109.47431 * 59.99849 * 1 2 3 32 32 H 1.09005 * 109.46873 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46516 * 299.99427 * 1 2 3 34 34 H 1.09005 * 109.47255 * 240.00542 * 2 1 3 35 35 H 1.08996 * 109.47832 * 120.00465 * 2 1 3 36 36 H 1.07994 * 119.99483 * 359.97438 * 4 3 2 37 37 H 1.08003 * 119.99681 * 180.02562 * 5 4 3 38 38 H 1.08999 * 109.47130 * 179.97438 * 9 7 6 39 39 H 1.09001 * 109.47055 * 300.00286 * 9 7 6 40 40 H 1.09001 * 109.46824 * 60.00298 * 9 7 6 41 41 H 1.09004 * 109.47575 * 54.99734 * 10 7 6 42 42 H 1.09006 * 109.47471 * 294.99597 * 10 7 6 43 43 H 0.97004 * 120.00464 * 359.97438 * 13 11 10 44 44 H 1.09000 * 113.61438 * 25.47489 * 16 14 13 45 45 H 1.08997 * 113.69655 * 254.49255 * 16 14 13 46 46 H 0.97000 * 119.99307 * 285.86061 * 19 17 16 47 47 H 0.97000 * 120.00330 * 179.97438 * 23 22 20 48 48 H 1.08996 * 113.61908 * 140.02474 * 28 17 16 49 49 H 1.09004 * 113.61191 * 270.92766 * 28 17 16 50 50 H 1.08003 * 119.99720 * 179.72909 * 29 6 5 51 51 H 1.07998 * 120.00399 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3755 1.1972 6 6 2.9545 4.0272 0.0001 7 6 3.4569 5.4480 0.0001 8 1 3.5784 5.7904 1.0278 9 6 4.8047 5.5125 -0.7211 10 6 2.4491 6.3452 -0.7210 11 6 2.8898 7.7824 -0.6146 12 8 3.9098 8.0615 -0.0209 13 7 2.1510 8.7575 -1.1802 14 6 2.5798 10.1546 -1.0772 15 1 3.2296 10.3359 -0.2210 16 6 3.1210 10.7331 -2.3984 17 6 2.3775 12.0308 -2.0404 18 1 1.8950 12.5072 -2.8938 19 7 3.1777 12.9651 -1.2446 20 6 3.6890 14.0951 -1.8250 21 1 3.5028 14.2975 -2.8694 22 6 4.4467 14.9806 -1.0709 23 7 4.6741 14.7338 0.2018 24 14 5.1507 16.5181 -1.8645 25 1 4.0428 17.3540 -2.3930 26 1 5.9156 17.2912 -0.8533 27 1 6.0537 16.1314 -2.9781 28 6 1.4259 11.1637 -1.1994 29 6 2.7186 3.3775 -1.1970 30 6 2.2631 2.0723 -1.1971 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3632 0.5138 0.8901 34 1 1.8934 -0.5138 -0.8901 35 1 1.8935 -0.5139 0.8899 36 1 2.0824 1.5634 2.1324 37 1 2.9045 3.8844 2.1326 38 1 5.1678 6.5402 -0.7215 39 1 5.5226 4.8732 -0.2072 40 1 4.6836 5.1699 -1.7488 41 1 1.4672 6.2314 -0.2616 42 1 2.3941 6.0589 -1.7714 43 1 1.3358 8.5342 -1.6561 44 1 2.7291 10.2360 -3.2857 45 1 4.2054 10.8421 -2.4172 46 1 3.3452 12.7832 -0.3067 47 1 5.2039 15.3523 0.7287 48 1 1.1425 11.6200 -0.2510 49 1 0.5713 10.7840 -1.7596 50 1 2.8945 3.8882 -2.1323 51 1 2.0838 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690290198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:54 Heat of formation + Delta-G solvation = -23.664453 kcal Electronic energy + Delta-G solvation = -27077.738965 eV Core-core repulsion = 23361.974120 eV Total energy + Delta-G solvation = -3715.764845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.28934 -40.47127 -39.42091 -36.66895 -35.68913 -34.24438 -33.85784 -31.77464 -31.71972 -29.73449 -28.78131 -26.51208 -26.19796 -25.24532 -24.30043 -23.66456 -22.61263 -21.54265 -20.76212 -20.07171 -19.34464 -18.20522 -17.38263 -16.92060 -16.69556 -16.56145 -16.19403 -15.95673 -15.72022 -15.33840 -15.04189 -14.75890 -14.68875 -14.46829 -14.26192 -14.07653 -13.95619 -13.81155 -13.62900 -13.31787 -13.28671 -13.03678 -12.76038 -12.65306 -12.60127 -12.33363 -12.27886 -12.22173 -12.05476 -11.80841 -11.80368 -11.69489 -11.57445 -11.48194 -11.29795 -10.89346 -10.63386 -9.90446 -9.76659 -9.36483 -9.02932 -7.95890 -5.25702 0.45655 0.55627 1.46705 1.50489 1.56476 1.71090 2.29911 2.55237 2.88040 3.35995 3.64280 3.67877 3.77711 3.85051 3.91009 3.94378 4.04764 4.12189 4.20483 4.22769 4.30988 4.36716 4.39414 4.51650 4.55344 4.63035 4.67820 4.68928 4.75229 4.81107 4.83741 4.86050 4.98825 5.05059 5.09871 5.12241 5.17113 5.19985 5.21028 5.26415 5.29968 5.32506 5.40097 5.42891 5.51549 5.60402 5.73651 5.78445 5.80479 6.17410 6.26258 6.68877 7.30838 7.40063 8.07562 8.28818 9.27400 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.032436 B = 0.001730 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.021753 B =16179.898680 C =16453.002001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.127 4.127 6 C -0.085 4.085 7 C -0.031 4.031 8 H 0.064 0.936 9 C -0.145 4.145 10 C -0.121 4.121 11 C 0.503 3.497 12 O -0.586 6.586 13 N -0.704 5.704 14 C 0.132 3.868 15 H 0.067 0.933 16 C -0.170 4.170 17 C 0.149 3.851 18 H 0.077 0.923 19 N -0.723 5.723 20 C -0.246 4.246 21 H 0.082 0.918 22 C -0.078 4.078 23 N -0.972 5.972 24 Si 0.977 3.023 25 H -0.273 1.273 26 H -0.298 1.298 27 H -0.279 1.279 28 C -0.138 4.138 29 C -0.115 4.115 30 C -0.122 4.122 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.418 0.582 44 H 0.106 0.894 45 H 0.032 0.968 46 H 0.371 0.629 47 H 0.251 0.749 48 H 0.059 0.941 49 H 0.126 0.874 50 H 0.134 0.866 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -32.151 -4.349 34.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.085 4.085 7 C -0.050 4.050 8 H 0.083 0.917 9 C -0.202 4.202 10 C -0.160 4.160 11 C 0.291 3.709 12 O -0.466 6.466 13 N -0.356 5.356 14 C 0.026 3.974 15 H 0.085 0.915 16 C -0.212 4.212 17 C 0.038 3.962 18 H 0.095 0.905 19 N -0.361 5.361 20 C -0.377 4.377 21 H 0.100 0.900 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.199 1.199 26 H -0.224 1.224 27 H -0.205 1.205 28 C -0.177 4.177 29 C -0.132 4.132 30 C -0.140 4.140 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.255 0.745 44 H 0.124 0.876 45 H 0.051 0.949 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.144 0.856 50 H 0.152 0.848 51 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.249 -31.800 -4.056 33.974 hybrid contribution 0.732 1.124 0.360 1.389 sum -10.517 -30.676 -3.696 32.639 Atomic orbital electron populations 1.21731 0.94303 1.02280 1.01884 1.20576 0.96465 0.91656 1.03442 1.20169 0.98893 0.97150 0.93110 1.21200 1.00008 0.94659 0.98410 1.21229 0.99993 0.95422 0.97813 1.19797 0.99761 0.95165 0.93821 1.19752 0.94511 0.90629 1.00099 0.91738 1.21893 0.96172 1.01828 1.00315 1.21755 1.01107 0.88429 1.04716 1.21407 0.83112 0.89073 0.77283 1.90700 1.26866 1.84748 1.44274 1.45927 1.27886 1.05616 1.56152 1.22175 0.97372 0.80015 0.97790 0.91471 1.24205 0.99696 0.99409 0.97867 1.21269 0.91911 0.88534 0.94492 0.90544 1.42379 1.60689 1.23041 1.09986 1.19688 1.24770 0.98231 0.95061 0.90016 1.25642 1.02193 1.02752 0.96432 1.69832 1.45351 1.39177 1.07848 0.85162 0.78168 0.79222 0.76899 1.19851 1.22415 1.20509 1.23715 0.97348 0.95587 1.01051 1.21162 0.99258 0.95046 0.97775 1.21261 0.99720 0.94771 0.98264 0.92741 0.91355 0.93104 0.90279 0.90650 0.85111 0.86100 0.93163 0.93097 0.91538 0.86787 0.86194 0.74461 0.87613 0.94922 0.79743 0.94075 0.92247 0.85589 0.84772 0.84512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.90 71.98 0.71 -0.50 16 2 C -0.08 -0.78 6.06 29.85 0.18 -0.60 16 3 C -0.09 -1.26 5.13 -19.87 -0.10 -1.36 16 4 C -0.12 -1.88 9.70 22.27 0.22 -1.66 16 5 C -0.13 -2.20 9.67 22.27 0.22 -1.98 16 6 C -0.09 -1.49 4.78 -19.87 -0.09 -1.58 16 7 C -0.03 -0.63 2.21 -11.54 -0.03 -0.65 16 8 H 0.06 1.58 7.69 -2.39 -0.02 1.56 16 9 C -0.14 -3.28 8.75 71.98 0.63 -2.65 16 10 C -0.12 -2.07 4.91 29.85 0.15 -1.92 16 11 C 0.50 13.43 7.55 87.66 0.66 14.09 16 12 O -0.59 -22.13 13.56 -3.02 -0.04 -22.17 16 13 N -0.70 -16.64 5.36 -439.59 -2.35 -19.00 16 14 C 0.13 4.29 4.13 45.61 0.19 4.48 16 15 H 0.07 2.86 7.46 -2.39 -0.02 2.84 16 16 C -0.17 -5.82 7.70 31.21 0.24 -5.58 16 17 C 0.15 5.68 4.55 45.52 0.21 5.89 16 18 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 19 N -0.72 -37.22 5.31 -320.44 -1.70 -38.92 16 20 C -0.25 -13.84 9.97 84.04 0.84 -13.00 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 22 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 23 N -0.97 -61.35 13.06 21.65 0.28 -61.06 16 24 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 C -0.14 -4.07 7.57 31.12 0.24 -3.83 16 29 C -0.11 -1.67 8.76 22.27 0.20 -1.48 16 30 C -0.12 -1.63 9.70 22.27 0.22 -1.41 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.08 0.61 8.09 -2.38 -0.02 0.59 16 35 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 36 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.12 2.01 7.95 -2.91 -0.02 1.98 16 38 H 0.05 1.48 5.95 -2.39 -0.01 1.46 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.23 7.41 -2.39 -0.02 1.21 16 41 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.12 1.43 7.56 -2.38 -0.02 1.41 16 43 H 0.42 6.17 8.73 -92.71 -0.81 5.36 16 44 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.37 20.95 7.90 -92.71 -0.73 20.22 16 47 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 48 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 49 H 0.13 2.55 8.12 -2.38 -0.02 2.54 16 50 H 0.13 1.54 7.16 -2.91 -0.02 1.51 16 51 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -74.80 412.31 2.72 -72.08 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.62 Total: 38.09 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 5.13 Total: -17.88 kcal Atomic # 7 Polarization: -115.21 SS G_CDS: -3.77 Total: -118.98 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -74.80 2.72 -72.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690290198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.420 kcal (2) G-P(sol) polarization free energy of solvation -74.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds