Wall clock time and date at job start Tue Mar 31 2020 16:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46931 * 2 1 4 4 C 1.38238 * 119.99775 * 90.00165 * 3 2 1 5 5 C 1.38233 * 119.99920 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99899 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99827 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47083 * 0.02562 * 7 6 5 9 9 C 1.52993 * 109.46941 * 239.99813 * 7 6 5 10 10 C 1.53000 * 109.46801 * 119.99847 * 7 6 5 11 11 C 1.50703 * 109.46912 * 184.99967 * 10 7 6 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 7 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84993 * 336.19005 * 14 13 11 16 16 C 1.53781 * 113.61614 * 107.49783 * 14 13 11 17 17 C 1.53778 * 87.07849 * 89.11738 * 16 14 13 18 18 H 1.09010 * 113.61773 * 270.88132 * 17 16 14 19 19 N 1.46508 * 113.69249 * 139.99495 * 17 16 14 20 20 C 1.36932 * 120.00275 * 107.46252 * 19 17 16 21 21 H 1.07997 * 119.99869 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00085 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99851 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47405 * 119.99727 * 24 22 20 27 27 H 1.48497 * 109.46871 * 239.99535 * 24 22 20 28 28 C 1.53777 * 87.08604 * 25.43188 * 17 16 14 29 29 C 1.38229 * 119.99887 * 0.25192 * 6 5 4 30 30 C 1.38231 * 120.00325 * 269.97438 * 3 2 1 31 31 H 1.08995 * 109.47143 * 59.99680 * 1 2 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47062 * 300.00180 * 1 2 3 34 34 H 1.08996 * 109.47183 * 239.99810 * 2 1 3 35 35 H 1.08999 * 109.47000 * 119.99845 * 2 1 3 36 36 H 1.08003 * 120.00305 * 359.97438 * 4 3 2 37 37 H 1.08006 * 120.00050 * 180.02562 * 5 4 3 38 38 H 1.08993 * 109.47639 * 300.00091 * 9 7 6 39 39 H 1.09004 * 109.47135 * 60.00236 * 9 7 6 40 40 H 1.09002 * 109.47179 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47398 * 305.00045 * 10 7 6 42 42 H 1.09001 * 109.47194 * 65.00225 * 10 7 6 43 43 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 44 44 H 1.09000 * 113.61467 * 203.66301 * 16 14 13 45 45 H 1.08991 * 113.61330 * 334.57193 * 16 14 13 46 46 H 0.97005 * 119.99470 * 287.46349 * 19 17 16 47 47 H 0.96996 * 119.99880 * 180.02562 * 23 22 20 48 48 H 1.08998 * 113.61996 * 220.01715 * 28 17 16 49 49 H 1.08998 * 113.68961 * 89.12615 * 28 17 16 50 50 H 1.08001 * 119.99926 * 179.72751 * 29 6 5 51 51 H 1.08006 * 119.99809 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0001 8 1 3.5781 5.7905 1.0278 9 6 2.4488 6.3453 -0.7211 10 6 4.8044 5.5125 -0.7212 11 6 5.3649 6.9074 -0.6148 12 8 4.7469 7.7656 -0.0210 13 7 6.5523 7.2015 -1.1804 14 6 7.0974 8.5573 -1.0765 15 1 6.3283 9.3110 -0.9073 16 6 8.2933 8.6686 -0.1161 17 6 9.1909 8.3427 -1.3215 18 1 9.3577 7.2752 -1.4658 19 7 10.4306 9.1225 -1.3603 20 6 11.6270 8.5212 -1.0736 21 1 11.6566 7.4722 -0.8185 22 6 12.8014 9.2602 -1.1098 23 7 12.7652 10.5388 -1.4202 24 14 14.4336 8.4397 -0.7195 25 1 14.2044 7.0068 -0.4043 26 1 15.3367 8.5506 -1.8931 27 1 15.0572 9.1097 0.4499 28 6 8.0739 8.9171 -2.2088 29 6 2.7184 3.3776 -1.1970 30 6 2.2632 2.0724 -1.1971 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0824 1.5635 2.1325 37 1 2.9044 3.8846 2.1326 38 1 2.3277 6.0028 -1.7487 39 1 1.4886 6.2994 -0.2073 40 1 2.8119 7.3731 -0.7207 41 1 5.4965 4.8069 -0.2617 42 1 4.6671 5.2553 -1.7714 43 1 7.0464 6.5152 -1.6556 44 1 8.4427 9.6727 0.2807 45 1 8.3051 7.9007 0.6572 46 1 10.4038 10.0648 -1.5890 47 1 13.5859 11.0551 -1.4458 48 1 7.9085 8.3498 -3.1247 49 1 8.1622 9.9891 -2.3850 50 1 2.8942 3.8882 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690290199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:59 Heat of formation + Delta-G solvation = -5.565129 kcal Electronic energy + Delta-G solvation = -26996.444900 eV Core-core repulsion = 23281.464901 eV Total energy + Delta-G solvation = -3714.979999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.37729 -39.67063 -38.12182 -35.92862 -34.03603 -33.29963 -32.59143 -31.18755 -30.00798 -29.05776 -27.86903 -25.12956 -24.78812 -24.35370 -23.08227 -22.51021 -21.85575 -20.82860 -19.86529 -18.92459 -17.45518 -17.10006 -16.26703 -16.07458 -15.66626 -15.43873 -15.23525 -14.89781 -14.40004 -14.11497 -14.00261 -13.94435 -13.81797 -13.67211 -13.40503 -13.33238 -12.91298 -12.67262 -12.47329 -12.24236 -12.00577 -11.86403 -11.74533 -11.65781 -11.58185 -11.31504 -11.27289 -10.95681 -10.92104 -10.83336 -10.78346 -10.31980 -10.20099 -9.91835 -9.67411 -9.56087 -9.16450 -8.92356 -8.76449 -8.74504 -6.99600 -5.81559 -3.10554 1.06834 1.15910 2.69200 3.22599 3.40383 3.46094 3.48349 3.50172 4.36635 4.43669 4.52533 4.56201 4.63219 4.75849 4.82815 4.92055 4.95391 4.98205 5.07867 5.14462 5.21208 5.22363 5.25131 5.30452 5.43172 5.44141 5.49408 5.49745 5.54825 5.58134 5.73213 5.78628 5.82419 5.86180 5.87390 5.93140 5.99611 6.12998 6.15698 6.24759 6.28271 6.32073 6.35123 6.44703 6.53206 6.63092 6.70023 6.76203 7.08210 7.62577 7.66369 8.32357 8.36831 9.48184 10.05648 10.40003 11.40820 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001817 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.993921 B =15406.155421 C =16345.757005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.078 4.078 7 C -0.034 4.034 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.134 4.134 11 C 0.514 3.486 12 O -0.541 6.541 13 N -0.708 5.708 14 C 0.116 3.884 15 H 0.095 0.905 16 C -0.176 4.176 17 C 0.167 3.833 18 H 0.073 0.927 19 N -0.712 5.712 20 C -0.245 4.245 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.159 4.159 29 C -0.111 4.111 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.400 0.600 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.386 0.614 47 H 0.255 0.745 48 H 0.063 0.937 49 H 0.090 0.910 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.481 -18.712 0.477 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.078 4.078 7 C -0.053 4.053 8 H 0.104 0.896 9 C -0.206 4.206 10 C -0.174 4.174 11 C 0.300 3.700 12 O -0.419 6.419 13 N -0.358 5.358 14 C 0.010 3.990 15 H 0.113 0.887 16 C -0.218 4.218 17 C 0.054 3.946 18 H 0.091 0.909 19 N -0.350 5.350 20 C -0.376 4.376 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.199 4.199 29 C -0.129 4.129 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.234 0.766 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.109 0.891 50 H 0.139 0.861 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.733 -18.193 0.930 31.528 hybrid contribution 1.277 -0.422 -0.053 1.346 sum -24.456 -18.615 0.877 30.747 Atomic orbital electron populations 1.21747 0.94771 1.01639 1.02231 1.20539 0.96149 0.92787 1.02783 1.19881 0.99515 0.96239 0.93271 1.21003 1.00078 0.94889 0.97473 1.21095 0.99524 0.94724 0.97682 1.19903 0.99075 0.95626 0.93193 1.19866 0.93227 0.90932 1.01305 0.89550 1.21960 0.98227 1.01159 0.99210 1.21764 0.97855 0.94758 1.03060 1.20589 0.80746 0.90320 0.78301 1.90657 1.59281 1.49672 1.42249 1.45765 1.21115 1.12748 1.56216 1.21806 0.95055 0.83503 0.98637 0.88704 1.24292 0.96218 1.02239 0.99063 1.21619 0.85360 0.95349 0.92238 0.90900 1.42410 1.01192 1.09815 1.81608 1.19338 0.84800 0.94272 1.39191 0.91066 1.24771 0.97916 0.95840 1.02344 1.69668 1.26943 1.06349 1.54969 0.86119 0.84146 0.78385 0.77538 1.20540 1.21823 1.21822 1.23854 0.96762 1.02341 0.96977 1.20990 0.99592 0.94609 0.97719 1.20998 1.00144 0.94887 0.97442 0.92567 0.92458 0.92579 0.91110 0.91127 0.86287 0.86026 0.93194 0.92876 0.90113 0.88757 0.88867 0.76576 0.89660 0.92487 0.78016 0.93471 0.91818 0.89107 0.86096 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.89 37.16 0.37 -0.41 16 2 C -0.09 -0.50 6.06 -27.88 -0.17 -0.67 16 3 C -0.09 -0.69 5.13 -104.62 -0.54 -1.23 16 4 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 5 C -0.11 -0.98 9.67 -39.58 -0.38 -1.37 16 6 C -0.08 -0.70 4.78 -104.62 -0.50 -1.20 16 7 C -0.03 -0.33 2.21 -91.77 -0.20 -0.53 16 8 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 9 C -0.15 -1.47 8.74 37.15 0.32 -1.14 16 10 C -0.13 -1.23 4.92 -27.88 -0.14 -1.37 16 11 C 0.51 6.48 7.55 -10.98 -0.08 6.40 16 12 O -0.54 -8.67 13.56 5.56 0.08 -8.60 16 13 N -0.71 -8.78 5.26 -53.02 -0.28 -9.06 16 14 C 0.12 1.72 4.32 -67.12 -0.29 1.43 16 15 H 0.09 1.50 7.46 -51.93 -0.39 1.11 16 16 C -0.18 -3.09 7.68 -25.92 -0.20 -3.29 16 17 C 0.17 3.17 4.35 -67.12 -0.29 2.87 16 18 H 0.07 1.35 8.10 -51.92 -0.42 0.92 16 19 N -0.71 -17.53 5.40 -52.63 -0.28 -17.82 16 20 C -0.24 -6.71 9.97 -15.06 -0.15 -6.86 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 24 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 C -0.16 -2.50 7.58 -25.92 -0.20 -2.69 16 29 C -0.11 -0.91 8.76 -39.59 -0.35 -1.26 16 30 C -0.12 -0.91 9.70 -39.59 -0.38 -1.30 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 36 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.12 0.95 7.95 -52.48 -0.42 0.53 16 38 H 0.05 0.43 7.37 -51.93 -0.38 0.05 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.98 5.95 -51.93 -0.31 0.67 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.09 0.69 7.59 -51.93 -0.39 0.29 16 43 H 0.40 4.09 8.70 -40.82 -0.36 3.73 16 44 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.39 10.09 7.93 -40.82 -0.32 9.77 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.47 8.12 -51.93 -0.42 1.05 16 50 H 0.12 0.84 7.16 -52.49 -0.38 0.47 16 51 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 412.28 15.07 6.21 6.21 Total: -1.00 -31.86 412.28 -11.03 -42.89 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.80 Total: 10.77 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.66 Total: -14.37 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.16 Total: -54.05 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.86 -11.03 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690290199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.324 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds