Wall clock time and date at job start Tue Mar 31 2020 16:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46931 * 2 1 4 4 C 1.38238 * 119.99775 * 90.00165 * 3 2 1 5 5 C 1.38233 * 119.99920 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99899 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.99827 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47083 * 0.02562 * 7 6 5 9 9 C 1.52993 * 109.46941 * 239.99813 * 7 6 5 10 10 C 1.53000 * 109.46801 * 119.99847 * 7 6 5 11 11 C 1.50703 * 109.46912 * 184.99967 * 10 7 6 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 7 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 7 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84993 * 336.19005 * 14 13 11 16 16 C 1.53781 * 113.61614 * 107.49783 * 14 13 11 17 17 C 1.53778 * 87.07849 * 89.11738 * 16 14 13 18 18 H 1.09010 * 113.61773 * 270.88132 * 17 16 14 19 19 N 1.46508 * 113.69249 * 139.99495 * 17 16 14 20 20 C 1.36932 * 120.00275 * 107.46252 * 19 17 16 21 21 H 1.07997 * 119.99869 * 359.97438 * 20 19 17 22 22 C 1.38810 * 119.99887 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00085 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99851 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47124 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47405 * 119.99727 * 24 22 20 27 27 H 1.48497 * 109.46871 * 239.99535 * 24 22 20 28 28 C 1.53777 * 87.08604 * 25.43188 * 17 16 14 29 29 C 1.38229 * 119.99887 * 0.25192 * 6 5 4 30 30 C 1.38231 * 120.00325 * 269.97438 * 3 2 1 31 31 H 1.08995 * 109.47143 * 59.99680 * 1 2 3 32 32 H 1.08997 * 109.47111 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47062 * 300.00180 * 1 2 3 34 34 H 1.08996 * 109.47183 * 239.99810 * 2 1 3 35 35 H 1.08999 * 109.47000 * 119.99845 * 2 1 3 36 36 H 1.08003 * 120.00305 * 359.97438 * 4 3 2 37 37 H 1.08006 * 120.00050 * 180.02562 * 5 4 3 38 38 H 1.08993 * 109.47639 * 300.00091 * 9 7 6 39 39 H 1.09004 * 109.47135 * 60.00236 * 9 7 6 40 40 H 1.09002 * 109.47179 * 179.97438 * 9 7 6 41 41 H 1.09002 * 109.47398 * 305.00045 * 10 7 6 42 42 H 1.09001 * 109.47194 * 65.00225 * 10 7 6 43 43 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 44 44 H 1.09000 * 113.61467 * 203.66301 * 16 14 13 45 45 H 1.08991 * 113.61330 * 334.57193 * 16 14 13 46 46 H 0.97005 * 119.99470 * 287.46349 * 19 17 16 47 47 H 0.96996 * 119.99880 * 180.02562 * 23 22 20 48 48 H 1.08998 * 113.61996 * 220.01715 * 28 17 16 49 49 H 1.08998 * 113.68961 * 89.12615 * 28 17 16 50 50 H 1.08001 * 119.99926 * 179.72751 * 29 6 5 51 51 H 1.08006 * 119.99809 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7239 3.3756 1.1972 6 6 2.9543 4.0273 0.0000 7 6 3.4566 5.4481 0.0001 8 1 3.5781 5.7905 1.0278 9 6 2.4488 6.3453 -0.7211 10 6 4.8044 5.5125 -0.7212 11 6 5.3649 6.9074 -0.6148 12 8 4.7469 7.7656 -0.0210 13 7 6.5523 7.2015 -1.1804 14 6 7.0974 8.5573 -1.0765 15 1 6.3283 9.3110 -0.9073 16 6 8.2933 8.6686 -0.1161 17 6 9.1909 8.3427 -1.3215 18 1 9.3577 7.2752 -1.4658 19 7 10.4306 9.1225 -1.3603 20 6 11.6270 8.5212 -1.0736 21 1 11.6566 7.4722 -0.8185 22 6 12.8014 9.2602 -1.1098 23 7 12.7652 10.5388 -1.4202 24 14 14.4336 8.4397 -0.7195 25 1 14.2044 7.0068 -0.4043 26 1 15.3367 8.5506 -1.8931 27 1 15.0572 9.1097 0.4499 28 6 8.0739 8.9171 -2.2088 29 6 2.7184 3.3776 -1.1970 30 6 2.2632 2.0724 -1.1971 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0824 1.5635 2.1325 37 1 2.9044 3.8846 2.1326 38 1 2.3277 6.0028 -1.7487 39 1 1.4886 6.2994 -0.2073 40 1 2.8119 7.3731 -0.7207 41 1 5.4965 4.8069 -0.2617 42 1 4.6671 5.2553 -1.7714 43 1 7.0464 6.5152 -1.6556 44 1 8.4427 9.6727 0.2807 45 1 8.3051 7.9007 0.6572 46 1 10.4038 10.0648 -1.5890 47 1 13.5859 11.0551 -1.4458 48 1 7.9085 8.3498 -3.1247 49 1 8.1622 9.9891 -2.3850 50 1 2.8942 3.8882 -2.1324 51 1 2.0832 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690290199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:57 Heat of formation + Delta-G solvation = -22.757550 kcal Electronic energy + Delta-G solvation = -26997.190419 eV Core-core repulsion = 23281.464901 eV Total energy + Delta-G solvation = -3715.725518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.34545 -40.48879 -39.36475 -36.65287 -35.73433 -34.11215 -33.83795 -31.84572 -31.76913 -29.71620 -28.71259 -26.56293 -26.33841 -25.20554 -23.91829 -23.66202 -22.75477 -21.67375 -20.63522 -20.32257 -19.14308 -18.31463 -17.16060 -16.90650 -16.76910 -16.50583 -16.21048 -15.88318 -15.73761 -15.49659 -15.05600 -14.70297 -14.59178 -14.47586 -14.40724 -14.15948 -13.96984 -13.62936 -13.49371 -13.41589 -13.31933 -13.03238 -12.85221 -12.72457 -12.58099 -12.31900 -12.25777 -12.10590 -12.03140 -11.83945 -11.80077 -11.72672 -11.57238 -11.47145 -11.18019 -10.85218 -10.72789 -9.95378 -9.76160 -9.35993 -8.98866 -7.95140 -5.23576 0.46206 0.56158 1.47761 1.48411 1.58211 1.68853 2.21688 2.56341 2.88533 3.36715 3.64715 3.72799 3.78723 3.86008 3.94363 3.97046 4.05899 4.14577 4.20813 4.22489 4.33217 4.33864 4.38660 4.52727 4.54552 4.63687 4.68586 4.71104 4.75285 4.75605 4.87006 4.91704 4.92861 5.05905 5.09349 5.11508 5.14435 5.20469 5.21769 5.23077 5.28151 5.30997 5.39436 5.43000 5.51516 5.60834 5.75087 5.78870 5.80850 6.18009 6.27110 6.63780 7.33105 7.33595 8.10057 8.32304 9.28348 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001817 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.993921 B =15406.155421 C =16345.757005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.086 4.086 7 C -0.030 4.030 8 H 0.067 0.933 9 C -0.144 4.144 10 C -0.125 4.125 11 C 0.513 3.487 12 O -0.578 6.578 13 N -0.701 5.701 14 C 0.136 3.864 15 H 0.088 0.912 16 C -0.173 4.173 17 C 0.153 3.847 18 H 0.084 0.916 19 N -0.728 5.728 20 C -0.243 4.243 21 H 0.079 0.921 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.972 3.028 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.297 1.297 28 C -0.143 4.143 29 C -0.115 4.115 30 C -0.124 4.124 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.414 0.586 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.087 0.913 49 H 0.084 0.916 50 H 0.135 0.865 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.392 -21.486 -0.395 34.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.086 4.086 7 C -0.049 4.049 8 H 0.086 0.914 9 C -0.201 4.201 10 C -0.164 4.164 11 C 0.301 3.699 12 O -0.457 6.457 13 N -0.352 5.352 14 C 0.029 3.971 15 H 0.106 0.894 16 C -0.216 4.216 17 C 0.043 3.957 18 H 0.101 0.899 19 N -0.365 5.365 20 C -0.375 4.375 21 H 0.097 0.903 22 C -0.269 4.269 23 N -0.621 5.621 24 Si 0.801 3.199 25 H -0.189 1.189 26 H -0.220 1.220 27 H -0.224 1.224 28 C -0.182 4.182 29 C -0.133 4.133 30 C -0.142 4.142 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.251 0.749 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.105 0.895 49 H 0.103 0.897 50 H 0.153 0.847 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.684 -21.036 0.054 33.979 hybrid contribution 1.438 0.390 0.257 1.512 sum -25.246 -20.646 0.311 32.614 Atomic orbital electron populations 1.21732 0.94412 1.02271 1.01799 1.20578 0.96384 0.91751 1.03473 1.20165 0.98944 0.97135 0.93169 1.21205 1.00053 0.94773 0.98344 1.21244 1.00025 0.95277 0.97903 1.19835 0.99973 0.95138 0.93698 1.19756 0.93468 0.91398 1.00239 0.91443 1.21891 0.98137 0.99865 1.00197 1.21773 0.97529 0.92370 1.04776 1.21214 0.80212 0.91305 0.77163 1.90657 1.60216 1.51114 1.43745 1.45678 1.21248 1.11984 1.56321 1.21449 0.93899 0.84924 0.96835 0.89375 1.24145 0.97434 1.01121 0.98854 1.21969 0.84154 0.95520 0.94048 0.89850 1.42612 1.02311 1.09697 1.81885 1.19752 0.85887 0.94582 1.37257 0.90318 1.25572 1.01335 0.96492 1.03523 1.69821 1.27312 1.07792 1.57148 0.85095 0.79958 0.78129 0.76717 1.18851 1.22037 1.22421 1.23661 0.94749 1.02156 0.97658 1.21170 0.99338 0.94888 0.97885 1.21262 0.99779 0.94897 0.98212 0.92869 0.91318 0.93138 0.90274 0.90612 0.85177 0.85945 0.91669 0.93042 0.92462 0.87357 0.86246 0.74927 0.91466 0.92723 0.79429 0.94078 0.89466 0.89740 0.84707 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.89 71.98 0.71 -0.56 16 2 C -0.08 -0.81 6.06 29.85 0.18 -0.63 16 3 C -0.09 -1.28 5.13 -19.87 -0.10 -1.38 16 4 C -0.13 -1.87 9.70 22.27 0.22 -1.65 16 5 C -0.13 -2.11 9.67 22.27 0.22 -1.89 16 6 C -0.09 -1.42 4.78 -19.86 -0.09 -1.51 16 7 C -0.03 -0.54 2.21 -11.54 -0.03 -0.56 16 8 H 0.07 1.46 7.69 -2.39 -0.02 1.45 16 9 C -0.14 -2.72 8.74 71.98 0.63 -2.09 16 10 C -0.12 -2.00 4.92 29.85 0.15 -1.85 16 11 C 0.51 12.13 7.55 87.66 0.66 12.79 16 12 O -0.58 -18.32 13.56 -3.02 -0.04 -18.36 16 13 N -0.70 -15.87 5.26 -440.04 -2.32 -18.18 16 14 C 0.14 3.87 4.32 45.52 0.20 4.07 16 15 H 0.09 2.73 7.46 -2.39 -0.02 2.71 16 16 C -0.17 -6.02 7.68 31.12 0.24 -5.79 16 17 C 0.15 5.66 4.35 45.51 0.20 5.86 16 18 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 19 N -0.73 -35.88 5.40 -320.44 -1.73 -37.62 16 20 C -0.24 -13.24 9.97 84.03 0.84 -12.40 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 24 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 28 C -0.14 -4.24 7.58 31.12 0.24 -4.01 16 29 C -0.11 -1.62 8.76 22.27 0.20 -1.43 16 30 C -0.12 -1.64 9.70 22.27 0.22 -1.43 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 35 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 36 H 0.13 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.12 1.90 7.95 -2.91 -0.02 1.88 16 38 H 0.06 1.00 7.37 -2.39 -0.02 0.98 16 39 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 1.37 5.95 -2.39 -0.01 1.36 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.12 1.32 7.59 -2.39 -0.02 1.31 16 43 H 0.41 7.17 8.70 -92.70 -0.81 6.37 16 44 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 46 H 0.37 19.93 7.93 -92.70 -0.73 19.20 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.08 2.67 8.12 -2.39 -0.02 2.65 16 50 H 0.14 1.45 7.16 -2.91 -0.02 1.43 16 51 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -68.99 412.28 2.72 -66.26 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.62 Total: 37.42 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.13 Total: -18.38 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -3.76 Total: -114.67 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.99 2.72 -66.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690290199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.505 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds