Wall clock time and date at job start Tue Mar 31 2020 16:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 C 1.50702 * 109.46921 * 119.99962 * 2 1 3 5 5 C 1.38226 * 119.99993 * 120.00406 * 4 2 1 6 6 C 1.38236 * 120.00380 * 179.97438 * 5 4 2 7 7 C 1.38239 * 119.99700 * 359.97415 * 6 5 4 8 8 C 1.50699 * 120.00049 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46866 * 89.99881 * 8 7 6 10 10 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00040 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00033 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 9 14 14 H 1.09010 * 112.84713 * 23.80153 * 13 12 10 15 15 C 1.53775 * 113.61518 * 154.99504 * 13 12 10 16 16 C 1.53783 * 87.08036 * 139.98225 * 15 13 12 17 17 H 1.09001 * 113.61368 * 89.20177 * 16 15 13 18 18 N 1.46502 * 113.61471 * 220.02369 * 16 15 13 19 19 C 1.36936 * 119.99945 * 205.00338 * 18 16 15 20 20 H 1.08003 * 119.99743 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00173 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99613 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99943 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47279 * 89.99886 * 23 21 19 25 25 H 1.48504 * 109.47012 * 210.00300 * 23 21 19 26 26 H 1.48503 * 109.47391 * 329.99999 * 23 21 19 27 27 C 1.53780 * 113.61396 * 252.49823 * 13 12 10 28 28 C 1.38236 * 119.99618 * 0.27400 * 7 6 5 29 29 C 1.38226 * 120.00377 * 359.51868 * 28 7 6 30 30 H 1.08998 * 109.47093 * 300.00250 * 1 2 3 31 31 H 1.09005 * 109.47278 * 59.99864 * 1 2 3 32 32 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47093 * 239.99750 * 2 1 3 34 34 H 1.09000 * 109.46977 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47210 * 300.00177 * 3 2 1 36 36 H 1.08998 * 109.47396 * 59.99936 * 3 2 1 37 37 H 1.08008 * 120.00171 * 359.97424 * 5 4 2 38 38 H 1.07994 * 120.00669 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47247 * 330.00049 * 8 7 6 40 40 H 1.09001 * 109.47358 * 209.99475 * 8 7 6 41 41 H 1.08993 * 109.46955 * 300.00219 * 9 8 7 42 42 H 1.09000 * 109.47050 * 60.00048 * 9 8 7 43 43 H 0.96996 * 119.99850 * 359.97438 * 12 10 9 44 44 H 1.08996 * 113.61822 * 254.53225 * 15 13 12 45 45 H 1.09002 * 113.61382 * 25.43896 * 15 13 12 46 46 H 0.96999 * 119.99876 * 24.99295 * 18 16 15 47 47 H 0.97003 * 119.99536 * 179.97438 * 22 21 19 48 48 H 1.08998 * 113.61365 * 334.56144 * 27 13 12 49 49 H 1.09001 * 113.61499 * 105.47025 * 27 13 12 50 50 H 1.08004 * 119.99728 * 179.72715 * 28 7 6 51 51 H 1.08002 * 120.00205 * 180.27350 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8342 1.1037 6 6 3.2883 -2.4856 2.2324 7 6 2.9551 -2.0128 3.4879 8 6 3.4584 -2.7225 4.7184 9 6 4.8064 -2.1297 5.1335 10 6 5.3094 -2.8390 6.3644 11 8 4.6539 -3.7305 6.8609 12 7 6.4871 -2.4820 6.9140 13 6 6.9757 -3.1711 8.1109 14 1 6.5577 -4.1715 8.2236 15 6 8.5044 -3.1209 8.2696 16 6 8.2624 -2.9058 9.7730 17 1 8.1975 -3.8334 10.3418 18 7 9.1699 -1.9287 10.3796 19 6 9.4434 -1.9884 11.7201 20 1 8.9898 -2.7555 12.3301 21 6 10.3037 -1.0629 12.2948 22 7 10.8569 -0.1284 11.5512 23 14 10.6761 -1.1439 14.1235 24 1 11.8590 -2.0127 14.3498 25 1 10.9608 0.2222 14.6316 26 1 9.5047 -1.7055 14.8429 27 6 6.8937 -2.3195 9.3887 28 6 2.1561 -0.8919 3.6146 29 6 1.6985 -0.2380 2.4861 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.0877 -2.2035 0.1227 38 1 3.9089 -3.3639 2.1333 39 1 3.5795 -3.7839 4.5017 40 1 2.7410 -2.5968 5.5293 41 1 5.5238 -2.2554 4.3226 42 1 4.6853 -1.0683 5.3502 43 1 7.0111 -1.7687 6.5171 44 1 8.9988 -4.0641 8.0375 45 1 8.9669 -2.2665 7.7753 46 1 9.5772 -1.2396 9.8317 47 1 11.4578 0.5186 11.9529 48 1 6.9158 -1.2462 9.2003 49 1 6.0877 -2.6160 10.0600 50 1 1.8922 -0.5250 4.5956 51 1 1.0778 0.6403 2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690348497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:00 Heat of formation + Delta-G solvation = -10.522144 kcal Electronic energy + Delta-G solvation = -26454.129522 eV Core-core repulsion = 22738.934571 eV Total energy + Delta-G solvation = -3715.194951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18645 -39.70294 -38.02349 -36.26188 -34.07243 -33.34258 -32.62411 -31.19811 -30.00536 -29.16942 -27.55670 -25.47069 -25.12254 -24.20525 -23.16133 -22.39384 -21.54850 -20.33209 -20.15648 -19.21143 -17.28676 -17.08310 -16.53456 -16.13861 -15.98745 -15.34838 -15.22541 -14.58768 -14.56094 -14.31814 -14.09432 -13.99868 -13.75403 -13.66268 -13.19833 -13.06053 -12.95640 -12.84512 -12.63303 -12.11996 -12.08138 -11.95817 -11.91693 -11.68890 -11.48878 -11.26937 -11.21144 -10.98185 -10.92966 -10.92313 -10.64040 -10.49627 -10.33141 -10.05735 -9.75288 -9.57275 -9.17210 -8.91884 -8.75153 -8.73274 -6.99575 -5.81364 -3.10147 1.05475 1.15184 2.70820 3.27236 3.41864 3.47410 3.48876 3.52293 4.26519 4.38337 4.53919 4.58513 4.67407 4.74863 4.77754 4.84099 4.94108 5.00386 5.02397 5.12713 5.20432 5.21156 5.22152 5.25521 5.36654 5.41068 5.41896 5.46162 5.47072 5.55684 5.63136 5.75779 5.78209 5.81229 5.86073 5.87701 5.94703 5.98627 6.12580 6.18419 6.24832 6.30667 6.35782 6.41403 6.52154 6.60851 6.75066 6.76300 7.06180 7.65451 7.67897 8.32607 8.37207 9.48578 10.05244 10.39872 11.41035 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001567 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.776161 B =17862.600553 C =18426.113427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.084 4.084 8 C -0.064 4.064 9 C -0.135 4.135 10 C 0.510 3.490 11 O -0.547 6.547 12 N -0.715 5.715 13 C 0.117 3.883 14 H 0.108 0.892 15 C -0.159 4.159 16 C 0.168 3.832 17 H 0.080 0.920 18 N -0.710 5.710 19 C -0.245 4.245 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.176 4.176 28 C -0.113 4.113 29 C -0.113 4.113 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.400 0.600 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.079 0.921 49 H 0.058 0.942 50 H 0.122 0.878 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 -0.419 -25.954 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.102 4.102 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.425 6.425 12 N -0.365 5.365 13 C 0.012 3.988 14 H 0.126 0.874 15 C -0.199 4.199 16 C 0.055 3.945 17 H 0.098 0.902 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.218 4.218 28 C -0.131 4.131 29 C -0.131 4.131 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.234 0.766 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.097 0.903 49 H 0.077 0.923 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -19.028 -1.083 -25.373 31.734 hybrid contribution 0.681 0.711 0.608 1.157 sum -18.347 -0.372 -24.765 30.823 Atomic orbital electron populations 1.21861 0.94364 1.02012 1.01929 1.20127 0.95936 0.96083 0.95402 1.21862 1.01316 0.95072 1.01937 1.19845 0.97951 0.95834 0.94631 1.21033 0.98295 0.95666 0.98497 1.21058 1.00109 1.00052 0.91922 1.19923 0.97737 0.95949 0.94780 1.20323 0.95550 0.99572 0.94776 1.21661 0.98254 1.01317 0.96309 1.20670 0.81109 0.83395 0.85175 1.90688 1.56617 1.31449 1.63763 1.46095 1.21708 1.38792 1.29908 1.22484 0.94887 0.97332 0.84096 0.87381 1.23860 0.93926 1.01901 1.00190 1.21359 0.89244 0.93500 0.90350 0.90239 1.42354 1.52222 1.33224 1.07016 1.19327 1.22027 1.11195 0.85031 0.90976 1.24764 0.99953 0.98033 0.98112 1.69660 1.34874 1.18907 1.34663 0.86174 0.78133 0.76778 0.85019 1.21654 1.21763 1.20683 1.24322 1.01567 1.00129 0.95791 1.21080 0.97904 0.95443 0.98685 1.20946 1.00306 0.99916 0.91909 0.92427 0.92422 0.92551 0.90597 0.92474 0.92429 0.92405 0.86296 0.86057 0.90219 0.90161 0.88926 0.88844 0.76633 0.91554 0.89999 0.78108 0.93465 0.90253 0.92303 0.86010 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.01 37.16 0.33 -0.44 16 2 C -0.06 -0.34 3.09 -91.77 -0.28 -0.62 16 3 C -0.14 -0.79 9.01 37.16 0.33 -0.46 16 4 C -0.08 -0.63 4.78 -104.62 -0.50 -1.13 16 5 C -0.12 -0.91 9.67 -39.59 -0.38 -1.29 16 6 C -0.11 -0.94 9.70 -39.58 -0.38 -1.33 16 7 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 8 C -0.06 -0.61 4.64 -27.88 -0.13 -0.74 16 9 C -0.14 -1.24 5.68 -27.88 -0.16 -1.40 16 10 C 0.51 6.62 7.83 -10.99 -0.09 6.53 16 11 O -0.55 -9.20 15.58 5.56 0.09 -9.12 16 12 N -0.72 -9.00 5.35 -53.02 -0.28 -9.28 16 13 C 0.12 1.75 4.24 -67.12 -0.28 1.46 16 14 H 0.11 1.71 7.47 -51.92 -0.39 1.32 16 15 C -0.16 -2.49 7.58 -25.92 -0.20 -2.68 16 16 C 0.17 3.27 4.48 -67.11 -0.30 2.97 16 17 H 0.08 1.55 8.10 -51.93 -0.42 1.12 16 18 N -0.71 -17.49 5.40 -52.63 -0.28 -17.78 16 19 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.83 13.06 55.49 0.72 -27.10 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C -0.18 -3.08 7.68 -25.92 -0.20 -3.28 16 28 C -0.11 -0.96 9.70 -39.59 -0.38 -1.35 16 29 C -0.11 -0.89 8.71 -39.59 -0.34 -1.23 16 30 H 0.06 0.31 7.39 -51.93 -0.38 -0.08 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.41 7.88 -51.93 -0.41 0.00 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.32 7.39 -51.93 -0.38 -0.07 16 37 H 0.12 0.73 7.95 -52.48 -0.42 0.31 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 40 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.40 4.10 8.73 -40.82 -0.36 3.75 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 46 H 0.38 9.97 7.92 -40.82 -0.32 9.65 16 47 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 50 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 51 H 0.12 0.78 7.10 -52.49 -0.37 0.40 16 LS Contribution 416.31 15.07 6.27 6.27 Total: -1.00 -32.12 416.31 -11.16 -43.28 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.91 Total: 10.13 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -3.75 Total: -13.62 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.16 Total: -54.16 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.12 -11.16 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690348497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.756 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds