Wall clock time and date at job start Tue Mar 31 2020 16:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47011 * 2 1 4 4 C 1.50702 * 109.46921 * 119.99962 * 2 1 3 5 5 C 1.38226 * 119.99993 * 120.00406 * 4 2 1 6 6 C 1.38236 * 120.00380 * 179.97438 * 5 4 2 7 7 C 1.38239 * 119.99700 * 359.97415 * 6 5 4 8 8 C 1.50699 * 120.00049 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46866 * 89.99881 * 8 7 6 10 10 C 1.50699 * 109.46866 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00040 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00033 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00165 * 179.97438 * 12 10 9 14 14 H 1.09010 * 112.84713 * 23.80153 * 13 12 10 15 15 C 1.53775 * 113.61518 * 154.99504 * 13 12 10 16 16 C 1.53783 * 87.08036 * 139.98225 * 15 13 12 17 17 H 1.09001 * 113.61368 * 89.20177 * 16 15 13 18 18 N 1.46502 * 113.61471 * 220.02369 * 16 15 13 19 19 C 1.36936 * 119.99945 * 205.00338 * 18 16 15 20 20 H 1.08003 * 119.99743 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00173 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99613 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99943 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47279 * 89.99886 * 23 21 19 25 25 H 1.48504 * 109.47012 * 210.00300 * 23 21 19 26 26 H 1.48503 * 109.47391 * 329.99999 * 23 21 19 27 27 C 1.53780 * 113.61396 * 252.49823 * 13 12 10 28 28 C 1.38236 * 119.99618 * 0.27400 * 7 6 5 29 29 C 1.38226 * 120.00377 * 359.51868 * 28 7 6 30 30 H 1.08998 * 109.47093 * 300.00250 * 1 2 3 31 31 H 1.09005 * 109.47278 * 59.99864 * 1 2 3 32 32 H 1.08994 * 109.47297 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47093 * 239.99750 * 2 1 3 34 34 H 1.09000 * 109.46977 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47210 * 300.00177 * 3 2 1 36 36 H 1.08998 * 109.47396 * 59.99936 * 3 2 1 37 37 H 1.08008 * 120.00171 * 359.97424 * 5 4 2 38 38 H 1.07994 * 120.00669 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.47247 * 330.00049 * 8 7 6 40 40 H 1.09001 * 109.47358 * 209.99475 * 8 7 6 41 41 H 1.08993 * 109.46955 * 300.00219 * 9 8 7 42 42 H 1.09000 * 109.47050 * 60.00048 * 9 8 7 43 43 H 0.96996 * 119.99850 * 359.97438 * 12 10 9 44 44 H 1.08996 * 113.61822 * 254.53225 * 15 13 12 45 45 H 1.09002 * 113.61382 * 25.43896 * 15 13 12 46 46 H 0.96999 * 119.99876 * 24.99295 * 18 16 15 47 47 H 0.97003 * 119.99536 * 179.97438 * 22 21 19 48 48 H 1.08998 * 113.61365 * 334.56144 * 27 13 12 49 49 H 1.09001 * 113.61499 * 105.47025 * 27 13 12 50 50 H 1.08004 * 119.99728 * 179.72715 * 28 7 6 51 51 H 1.08002 * 120.00205 * 180.27350 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8342 1.1037 6 6 3.2883 -2.4856 2.2324 7 6 2.9551 -2.0128 3.4879 8 6 3.4584 -2.7225 4.7184 9 6 4.8064 -2.1297 5.1335 10 6 5.3094 -2.8390 6.3644 11 8 4.6539 -3.7305 6.8609 12 7 6.4871 -2.4820 6.9140 13 6 6.9757 -3.1711 8.1109 14 1 6.5577 -4.1715 8.2236 15 6 8.5044 -3.1209 8.2696 16 6 8.2624 -2.9058 9.7730 17 1 8.1975 -3.8334 10.3418 18 7 9.1699 -1.9287 10.3796 19 6 9.4434 -1.9884 11.7201 20 1 8.9898 -2.7555 12.3301 21 6 10.3037 -1.0629 12.2948 22 7 10.8569 -0.1284 11.5512 23 14 10.6761 -1.1439 14.1235 24 1 11.8590 -2.0127 14.3498 25 1 10.9608 0.2222 14.6316 26 1 9.5047 -1.7055 14.8429 27 6 6.8937 -2.3195 9.3887 28 6 2.1561 -0.8919 3.6146 29 6 1.6985 -0.2380 2.4861 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.0877 -2.2035 0.1227 38 1 3.9089 -3.3639 2.1333 39 1 3.5795 -3.7839 4.5017 40 1 2.7410 -2.5968 5.5293 41 1 5.5238 -2.2554 4.3226 42 1 4.6853 -1.0683 5.3502 43 1 7.0111 -1.7687 6.5171 44 1 8.9988 -4.0641 8.0375 45 1 8.9669 -2.2665 7.7753 46 1 9.5772 -1.2396 9.8317 47 1 11.4578 0.5186 11.9529 48 1 6.9158 -1.2462 9.2003 49 1 6.0877 -2.6160 10.0600 50 1 1.8922 -0.5250 4.5956 51 1 1.0778 0.6403 2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690348497.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:59 Heat of formation + Delta-G solvation = -27.822484 kcal Electronic energy + Delta-G solvation = -26454.879721 eV Core-core repulsion = 22738.934571 eV Total energy + Delta-G solvation = -3715.945150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14825 -40.51346 -39.34511 -36.84027 -35.76567 -34.32063 -33.86529 -31.84395 -31.76816 -29.93795 -27.96283 -26.68877 -26.50417 -25.68547 -23.87215 -23.50527 -22.43030 -21.40254 -20.75095 -20.61428 -19.15385 -18.13941 -17.50101 -17.17231 -16.73849 -16.35682 -16.22657 -15.94525 -15.85143 -15.28148 -14.96543 -14.88887 -14.57815 -14.48246 -14.37379 -14.18516 -13.95873 -13.61946 -13.47134 -13.30460 -13.15736 -13.08931 -12.82307 -12.70726 -12.56755 -12.29477 -12.22457 -12.17786 -12.05509 -11.95572 -11.86023 -11.74499 -11.52450 -11.49507 -11.45059 -10.89353 -10.77941 -9.95288 -9.77272 -9.36771 -8.98788 -7.95734 -5.23695 0.44410 0.55068 1.48157 1.48997 1.57526 1.66898 2.26851 2.57195 2.88002 3.36086 3.65381 3.72472 3.82202 3.84854 3.88860 3.97057 4.08197 4.08456 4.19296 4.22764 4.31437 4.33843 4.34724 4.37878 4.57093 4.62458 4.65740 4.66951 4.79400 4.82102 4.88763 4.90585 4.95254 5.00344 5.01120 5.08037 5.14719 5.15218 5.18784 5.24498 5.28187 5.37402 5.40050 5.40890 5.51436 5.59429 5.69773 5.77622 5.80213 6.16630 6.26737 6.63079 7.30542 7.33425 8.08991 8.32673 9.27284 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.024158 B = 0.001567 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.776161 B =17862.600553 C =18426.113427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.093 4.093 8 C -0.058 4.058 9 C -0.124 4.124 10 C 0.509 3.491 11 O -0.588 6.588 12 N -0.708 5.708 13 C 0.136 3.864 14 H 0.104 0.896 15 C -0.139 4.139 16 C 0.148 3.852 17 H 0.078 0.922 18 N -0.723 5.723 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.971 3.029 24 H -0.286 1.286 25 H -0.296 1.296 26 H -0.272 1.272 27 C -0.170 4.170 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.414 0.586 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.376 0.624 47 H 0.251 0.749 48 H 0.071 0.929 49 H 0.051 0.949 50 H 0.126 0.874 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 -0.435 -27.501 33.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.086 4.086 5 C -0.143 4.143 6 C -0.138 4.138 7 C -0.093 4.093 8 C -0.096 4.096 9 C -0.164 4.164 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.358 5.358 13 C 0.030 3.970 14 H 0.122 0.878 15 C -0.179 4.179 16 C 0.038 3.962 17 H 0.096 0.904 18 N -0.361 5.361 19 C -0.379 4.379 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.800 3.200 24 H -0.213 1.213 25 H -0.222 1.222 26 H -0.197 1.197 27 C -0.212 4.212 28 C -0.142 4.142 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.134 0.866 42 H 0.127 0.873 43 H 0.250 0.750 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.208 0.792 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.144 0.856 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.618 -1.120 -26.954 33.356 hybrid contribution 0.767 0.674 1.026 1.448 sum -18.851 -0.446 -25.928 32.059 Atomic orbital electron populations 1.21850 0.93943 1.01819 1.02418 1.20163 0.96244 0.96211 0.94859 1.21849 1.00941 0.94846 1.02402 1.20103 0.97532 0.95796 0.95189 1.21282 0.98171 0.95697 0.99116 1.21231 1.00300 1.00437 0.91864 1.19874 0.98486 0.96299 0.94644 1.20212 0.95448 0.99229 0.94729 1.21650 0.98370 1.01455 0.94917 1.21312 0.80442 0.82761 0.85707 1.90676 1.57686 1.33368 1.65109 1.45982 1.21936 1.38916 1.29015 1.22098 0.94333 0.96637 0.83966 0.87802 1.23659 0.94560 1.02911 0.96762 1.21685 0.89483 0.92535 0.92513 0.90443 1.42491 1.53242 1.34161 1.06202 1.19707 1.21061 1.10590 0.86532 0.90671 1.25530 1.00641 0.98249 1.02154 1.69802 1.35973 1.19860 1.36169 0.85174 0.78077 0.76347 0.80364 1.21321 1.22233 1.19666 1.24153 0.99865 0.99930 0.97239 1.21227 0.98093 0.95613 0.99256 1.21125 1.00430 1.00296 0.91919 0.92569 0.91336 0.93073 0.89960 0.93023 0.91381 0.92560 0.84762 0.85091 0.91072 0.91565 0.86631 0.87273 0.74971 0.90035 0.89374 0.79190 0.94010 0.91056 0.93026 0.85581 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 71.98 0.65 -0.66 16 2 C -0.06 -0.57 3.09 -11.54 -0.04 -0.61 16 3 C -0.14 -1.33 9.01 71.98 0.65 -0.68 16 4 C -0.09 -1.18 4.78 -19.87 -0.09 -1.28 16 5 C -0.12 -1.74 9.67 22.27 0.22 -1.53 16 6 C -0.12 -1.83 9.70 22.27 0.22 -1.61 16 7 C -0.09 -1.55 5.13 -19.86 -0.10 -1.65 16 8 C -0.06 -1.06 4.64 29.85 0.14 -0.92 16 9 C -0.12 -2.04 5.68 29.85 0.17 -1.87 16 10 C 0.51 12.48 7.83 87.66 0.69 13.17 16 11 O -0.59 -19.44 15.58 -3.04 -0.05 -19.49 16 12 N -0.71 -16.49 5.35 -440.04 -2.36 -18.84 16 13 C 0.14 3.87 4.24 45.51 0.19 4.07 16 14 H 0.10 3.16 7.47 -2.38 -0.02 3.14 16 15 C -0.14 -4.14 7.58 31.12 0.24 -3.90 16 16 C 0.15 5.70 4.48 45.52 0.20 5.91 16 17 H 0.08 2.99 8.10 -2.39 -0.02 2.97 16 18 N -0.72 -35.74 5.40 -320.43 -1.73 -37.47 16 19 C -0.25 -13.64 9.97 84.03 0.84 -12.80 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 22 N -0.97 -58.41 13.06 21.65 0.28 -58.13 16 23 Si 0.97 45.93 29.55 68.60 2.03 47.96 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 27 C -0.17 -5.88 7.68 31.12 0.24 -5.64 16 28 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 29 C -0.12 -1.75 8.71 22.27 0.19 -1.55 16 30 H 0.06 0.52 7.39 -2.39 -0.02 0.51 16 31 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.73 7.88 -2.39 -0.02 0.71 16 34 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.06 0.53 7.39 -2.39 -0.02 0.52 16 37 H 0.13 1.38 7.95 -2.91 -0.02 1.36 16 38 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 40 H 0.07 1.38 8.04 -2.39 -0.02 1.36 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.41 7.47 8.73 -92.71 -0.81 6.66 16 44 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 46 H 0.38 19.65 7.92 -92.71 -0.73 18.92 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 49 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 51 H 0.13 1.53 7.10 -2.91 -0.02 1.51 16 Total: -1.00 -68.80 416.31 2.62 -66.18 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: -0.63 Total: 36.85 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 5.08 Total: -17.06 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.80 Total: -114.44 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -68.80 2.62 -66.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690348497.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.359 kcal (2) G-P(sol) polarization free energy of solvation -68.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds