Wall clock time and date at job start Tue Mar 31 2020 16:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52988 * 109.47515 * 2 1 4 4 C 1.53001 * 109.46955 * 120.00288 * 2 1 3 5 5 C 1.50701 * 109.46851 * 299.99388 * 4 2 1 6 6 O 1.21282 * 120.00048 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99867 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99963 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47014 * 180.02562 * 8 7 5 10 10 H 1.08997 * 112.85341 * 43.80062 * 9 8 7 11 11 C 1.53779 * 113.61546 * 174.99992 * 9 8 7 12 12 C 1.53782 * 87.08546 * 140.06221 * 11 9 8 13 13 H 1.08998 * 113.61084 * 89.19924 * 12 11 9 14 14 N 1.46499 * 113.61456 * 220.02048 * 12 11 9 15 15 C 1.36931 * 120.00122 * 204.99799 * 14 12 11 16 16 H 1.08002 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99535 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.27849 * 17 15 14 20 20 H 1.48501 * 109.46922 * 269.71949 * 19 17 15 21 21 H 1.48496 * 109.47354 * 29.72145 * 19 17 15 22 22 H 1.48501 * 109.47428 * 149.72253 * 19 17 15 23 23 C 1.53778 * 87.07767 * 334.56646 * 12 11 9 24 24 C 1.50701 * 109.46841 * 239.99682 * 2 1 3 25 25 C 1.38233 * 120.00042 * 239.72602 * 24 2 1 26 26 C 1.38241 * 119.99898 * 179.76641 * 25 24 2 27 27 C 1.38230 * 120.00123 * 0.50839 * 26 25 24 28 28 C 1.38245 * 119.99738 * 359.75131 * 27 26 25 29 29 C 1.38226 * 119.99908 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46939 * 300.00339 * 1 2 3 31 31 H 1.09003 * 109.47469 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47904 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47450 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47408 * 300.00132 * 3 2 1 35 35 H 1.09001 * 109.47717 * 59.99820 * 3 2 1 36 36 H 1.09002 * 109.46836 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.47675 * 59.99749 * 4 2 1 38 38 H 0.97003 * 120.00458 * 0.02562 * 7 5 4 39 39 H 1.08992 * 109.47498 * 59.99617 * 8 7 5 40 40 H 1.08998 * 109.46964 * 299.99483 * 8 7 5 41 41 H 1.08999 * 113.61499 * 25.51241 * 11 9 8 42 42 H 1.09005 * 113.69429 * 254.62509 * 11 9 8 43 43 H 0.97001 * 119.99790 * 24.99316 * 14 12 11 44 44 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 45 45 H 1.08997 * 113.61370 * 139.97838 * 23 12 11 46 46 H 1.08995 * 113.61926 * 270.88425 * 23 12 11 47 47 H 1.08003 * 120.00261 * 0.02562 * 25 24 2 48 48 H 1.08002 * 119.99718 * 180.23125 * 26 25 24 49 49 H 1.07999 * 120.00276 * 179.71987 * 27 26 25 50 50 H 1.07994 * 119.99456 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00062 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4423 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5377 -0.0108 2.4797 6 8 0.8401 0.9751 2.3684 7 7 1.8636 -0.4710 3.7038 8 6 1.3749 0.2193 4.9000 9 6 1.8860 -0.5011 6.1492 10 1 2.9368 -0.7815 6.0760 11 6 1.5296 0.2150 7.4625 12 6 1.2545 -1.1770 8.0554 13 1 2.1323 -1.6415 8.5045 14 7 0.0782 -1.2215 8.9275 15 6 -0.0158 -2.1787 9.9021 16 1 0.7774 -2.9008 10.0281 17 6 -1.1306 -2.2212 10.7281 18 7 -2.0971 -1.3409 10.5749 19 14 -1.2552 -3.5222 12.0627 20 1 -1.9290 -4.7279 11.5172 21 1 0.1072 -3.8850 12.5291 22 1 -2.0428 -2.9882 13.2027 23 6 0.9739 -1.6470 6.6183 24 6 2.0322 -0.7105 -1.2305 25 6 2.8316 -1.8311 -1.1036 26 6 3.2884 -2.4857 -2.2323 27 6 2.9544 -2.0135 -3.4878 28 6 2.1594 -0.8896 -3.6146 29 6 1.6980 -0.2385 -2.4860 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1299 -0.7217 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 2.4219 -1.2593 3.7928 39 1 0.2850 0.2187 4.9001 40 1 1.7376 1.2472 4.8999 41 1 0.6411 0.8423 7.3906 42 1 2.3732 0.7276 7.9249 43 1 -0.6340 -0.5727 8.8146 44 1 -2.8760 -1.3703 11.1523 45 1 1.3698 -2.6383 6.3979 46 1 -0.0665 -1.5287 6.3154 47 1 3.0959 -2.1977 -0.1227 48 1 3.9098 -3.3634 -2.1332 49 1 3.3150 -2.5222 -4.3696 50 1 1.8989 -0.5205 -4.5955 51 1 1.0773 0.6397 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691482106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:29 Heat of formation + Delta-G solvation = 7.637404 kcal Electronic energy + Delta-G solvation = -27370.619275 eV Core-core repulsion = 23656.211781 eV Total energy + Delta-G solvation = -3714.407494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.72737 -39.44577 -38.51008 -36.12834 -34.61677 -33.30863 -31.43185 -30.47602 -30.11861 -28.91847 -27.34048 -26.68280 -25.10026 -23.92531 -23.31427 -22.63447 -21.09539 -20.73909 -19.48694 -18.97658 -17.68214 -17.06362 -16.57655 -16.11004 -15.71482 -15.27641 -15.18781 -14.85271 -14.76189 -14.36963 -14.32085 -13.84169 -13.62977 -13.59220 -13.52156 -13.05024 -12.84387 -12.77754 -12.23241 -12.02519 -11.94243 -11.85821 -11.69112 -11.59242 -11.34409 -11.21938 -11.16520 -11.00832 -10.84287 -10.80032 -10.52555 -10.21867 -10.12331 -9.83800 -9.63157 -9.42867 -9.20767 -9.02029 -8.93260 -8.87588 -6.97523 -5.79437 -3.08330 1.08346 1.11122 2.57599 3.13184 3.41739 3.46831 3.48698 3.50293 4.27601 4.39696 4.57201 4.69746 4.72221 4.72995 4.76636 4.87006 4.96059 4.99928 5.10658 5.18385 5.22506 5.28982 5.29573 5.39916 5.45564 5.50052 5.62297 5.67303 5.70102 5.80206 5.81737 5.83560 5.88179 5.90808 5.94027 6.08098 6.10638 6.22700 6.23118 6.27862 6.29082 6.33676 6.35604 6.38310 6.52816 6.58750 6.72073 6.81829 7.10033 7.46532 7.67737 8.20392 8.39087 9.50118 10.08484 10.42619 11.42887 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.001776 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.914507 B =15762.526241 C =16117.033603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.005 4.005 3 C -0.149 4.149 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.534 6.534 7 N -0.726 5.726 8 C 0.132 3.868 9 C -0.127 4.127 10 H 0.087 0.913 11 C -0.142 4.142 12 C 0.165 3.835 13 H 0.075 0.925 14 N -0.713 5.713 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.282 1.282 22 H -0.291 1.291 23 C -0.160 4.160 24 C -0.065 4.065 25 C -0.126 4.126 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.119 4.119 29 C -0.114 4.114 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.399 0.601 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.120 0.880 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.636 1.280 -27.851 30.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.005 4.005 3 C -0.206 4.206 4 C -0.176 4.176 5 C 0.298 3.702 6 O -0.412 6.412 7 N -0.377 5.377 8 C 0.009 3.991 9 C -0.146 4.146 10 H 0.105 0.895 11 C -0.182 4.182 12 C 0.053 3.947 13 H 0.093 0.907 14 N -0.351 5.351 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.207 1.207 22 H -0.217 1.217 23 C -0.201 4.201 24 C -0.065 4.065 25 C -0.144 4.144 26 C -0.136 4.136 27 C -0.147 4.147 28 C -0.137 4.137 29 C -0.132 4.132 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.233 0.767 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.143 0.857 48 H 0.138 0.862 49 H 0.136 0.864 50 H 0.138 0.862 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.123 1.863 -27.728 30.320 hybrid contribution -0.028 -1.058 0.590 1.212 sum 12.094 0.805 -27.138 29.722 Atomic orbital electron populations 1.22131 0.92901 1.01830 1.03871 1.19191 0.96536 0.95157 0.89639 1.22122 1.00159 0.94493 1.03855 1.21873 1.02397 1.00717 0.92624 1.20561 0.80326 0.84713 0.84610 1.90582 1.37768 1.26474 1.86332 1.46117 1.53571 1.32099 1.05892 1.21423 0.99390 0.95700 0.82608 1.22633 0.99654 0.99068 0.93274 0.89460 1.23446 1.01185 0.99121 0.94475 1.21523 0.91499 0.92936 0.88726 0.90696 1.42410 1.19204 1.36568 1.36871 1.19303 1.02855 1.07225 1.08204 0.91105 1.24775 0.97028 0.99168 0.99978 1.69666 1.09540 1.37225 1.41543 0.86185 0.77396 0.81050 0.81519 1.21717 1.20746 1.21749 1.23942 0.98897 0.96219 1.01090 1.19912 0.96772 0.95300 0.94510 1.21202 0.98431 0.95825 0.98941 1.21156 0.99974 0.99799 0.92647 1.21136 0.99107 0.97057 0.97448 1.21139 0.98062 0.95993 0.98463 1.20987 1.00214 1.00088 0.91888 0.89132 0.92867 0.93299 0.93416 0.92876 0.89176 0.88750 0.88642 0.76690 0.91251 0.91825 0.90133 0.92040 0.78067 0.93448 0.92831 0.90376 0.85716 0.86179 0.86353 0.86240 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 7.99 37.16 0.30 -1.22 16 2 C 0.00 -0.04 0.60 -155.67 -0.09 -0.14 16 3 C -0.15 -1.43 7.99 37.15 0.30 -1.13 16 4 C -0.14 -1.10 3.43 -27.88 -0.10 -1.20 16 5 C 0.51 5.64 7.24 -10.99 -0.08 5.56 16 6 O -0.53 -7.56 11.35 5.56 0.06 -7.50 16 7 N -0.73 -7.45 5.56 -60.29 -0.33 -7.78 16 8 C 0.13 1.64 5.51 -4.04 -0.02 1.62 16 9 C -0.13 -1.63 3.75 -89.81 -0.34 -1.96 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.14 -2.22 7.39 -25.92 -0.19 -2.41 16 12 C 0.17 3.14 4.48 -67.12 -0.30 2.84 16 13 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 14 N -0.71 -17.65 5.40 -52.64 -0.28 -17.94 16 15 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 C -0.16 -2.58 7.43 -25.92 -0.19 -2.77 16 24 C -0.06 -0.56 4.76 -104.62 -0.50 -1.06 16 25 C -0.13 -0.99 8.98 -39.58 -0.36 -1.34 16 26 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 27 C -0.13 -0.94 10.05 -39.58 -0.40 -1.33 16 28 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 29 C -0.11 -0.95 8.71 -39.59 -0.34 -1.29 16 30 H 0.09 1.11 5.51 -51.92 -0.29 0.82 16 31 H 0.05 0.49 7.39 -51.93 -0.38 0.11 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.47 7.39 -51.93 -0.38 0.08 16 35 H 0.09 1.05 5.51 -51.93 -0.29 0.76 16 36 H 0.09 0.61 7.50 -51.93 -0.39 0.22 16 37 H 0.10 0.67 7.53 -51.93 -0.39 0.27 16 38 H 0.40 3.13 8.47 -40.82 -0.35 2.78 16 39 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.39 10.19 7.92 -40.82 -0.32 9.86 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 1.40 7.90 -51.93 -0.41 0.99 16 47 H 0.12 0.77 5.90 -52.48 -0.31 0.46 16 48 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 50 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 51 H 0.12 0.90 7.10 -52.49 -0.37 0.53 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -31.68 401.42 -10.64 -42.32 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.48 Total: 10.75 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -3.36 Total: -15.75 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.11 Total: -53.08 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.06 Total: -7.50 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.68 -10.64 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691482106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.955 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds