Wall clock time and date at job start Tue Mar 31 2020 16:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52988 * 109.47515 * 2 1 4 4 C 1.53001 * 109.46955 * 120.00288 * 2 1 3 5 5 C 1.50701 * 109.46851 * 299.99388 * 4 2 1 6 6 O 1.21282 * 120.00048 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99867 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99963 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47014 * 180.02562 * 8 7 5 10 10 H 1.08997 * 112.85341 * 43.80062 * 9 8 7 11 11 C 1.53779 * 113.61546 * 174.99992 * 9 8 7 12 12 C 1.53782 * 87.08546 * 140.06221 * 11 9 8 13 13 H 1.08998 * 113.61084 * 89.19924 * 12 11 9 14 14 N 1.46499 * 113.61456 * 220.02048 * 12 11 9 15 15 C 1.36931 * 120.00122 * 204.99799 * 14 12 11 16 16 H 1.08002 * 120.00098 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00429 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99535 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00187 * 180.27849 * 17 15 14 20 20 H 1.48501 * 109.46922 * 269.71949 * 19 17 15 21 21 H 1.48496 * 109.47354 * 29.72145 * 19 17 15 22 22 H 1.48501 * 109.47428 * 149.72253 * 19 17 15 23 23 C 1.53778 * 87.07767 * 334.56646 * 12 11 9 24 24 C 1.50701 * 109.46841 * 239.99682 * 2 1 3 25 25 C 1.38233 * 120.00042 * 239.72602 * 24 2 1 26 26 C 1.38241 * 119.99898 * 179.76641 * 25 24 2 27 27 C 1.38230 * 120.00123 * 0.50839 * 26 25 24 28 28 C 1.38245 * 119.99738 * 359.75131 * 27 26 25 29 29 C 1.38226 * 119.99908 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46939 * 300.00339 * 1 2 3 31 31 H 1.09003 * 109.47469 * 60.00020 * 1 2 3 32 32 H 1.09004 * 109.47904 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47450 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47408 * 300.00132 * 3 2 1 35 35 H 1.09001 * 109.47717 * 59.99820 * 3 2 1 36 36 H 1.09002 * 109.46836 * 179.97438 * 4 2 1 37 37 H 1.08995 * 109.47675 * 59.99749 * 4 2 1 38 38 H 0.97003 * 120.00458 * 0.02562 * 7 5 4 39 39 H 1.08992 * 109.47498 * 59.99617 * 8 7 5 40 40 H 1.08998 * 109.46964 * 299.99483 * 8 7 5 41 41 H 1.08999 * 113.61499 * 25.51241 * 11 9 8 42 42 H 1.09005 * 113.69429 * 254.62509 * 11 9 8 43 43 H 0.97001 * 119.99790 * 24.99316 * 14 12 11 44 44 H 0.97005 * 119.99717 * 180.02562 * 18 17 15 45 45 H 1.08997 * 113.61370 * 139.97838 * 23 12 11 46 46 H 1.08995 * 113.61926 * 270.88425 * 23 12 11 47 47 H 1.08003 * 120.00261 * 0.02562 * 25 24 2 48 48 H 1.08002 * 119.99718 * 180.23125 * 26 25 24 49 49 H 1.07999 * 120.00276 * 179.71987 * 27 26 25 50 50 H 1.07994 * 119.99456 * 179.97438 * 28 27 26 51 51 H 1.07999 * 120.00062 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4423 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5377 -0.0108 2.4797 6 8 0.8401 0.9751 2.3684 7 7 1.8636 -0.4710 3.7038 8 6 1.3749 0.2193 4.9000 9 6 1.8860 -0.5011 6.1492 10 1 2.9368 -0.7815 6.0760 11 6 1.5296 0.2150 7.4625 12 6 1.2545 -1.1770 8.0554 13 1 2.1323 -1.6415 8.5045 14 7 0.0782 -1.2215 8.9275 15 6 -0.0158 -2.1787 9.9021 16 1 0.7774 -2.9008 10.0281 17 6 -1.1306 -2.2212 10.7281 18 7 -2.0971 -1.3409 10.5749 19 14 -1.2552 -3.5222 12.0627 20 1 -1.9290 -4.7279 11.5172 21 1 0.1072 -3.8850 12.5291 22 1 -2.0428 -2.9882 13.2027 23 6 0.9739 -1.6470 6.6183 24 6 2.0322 -0.7105 -1.2305 25 6 2.8316 -1.8311 -1.1036 26 6 3.2884 -2.4857 -2.2323 27 6 2.9544 -2.0135 -3.4878 28 6 2.1594 -0.8896 -3.6146 29 6 1.6980 -0.2385 -2.4860 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3635 -1.0277 0.0005 33 1 3.1300 1.4423 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.1299 -0.7217 1.2490 37 1 1.6766 -1.7489 1.2493 38 1 2.4219 -1.2593 3.7928 39 1 0.2850 0.2187 4.9001 40 1 1.7376 1.2472 4.8999 41 1 0.6411 0.8423 7.3906 42 1 2.3732 0.7276 7.9249 43 1 -0.6340 -0.5727 8.8146 44 1 -2.8760 -1.3703 11.1523 45 1 1.3698 -2.6383 6.3979 46 1 -0.0665 -1.5287 6.3154 47 1 3.0959 -2.1977 -0.1227 48 1 3.9098 -3.3634 -2.1332 49 1 3.3150 -2.5222 -4.3696 50 1 1.8989 -0.5205 -4.5955 51 1 1.0773 0.6397 -2.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691482106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:28 Heat of formation + Delta-G solvation = -10.260176 kcal Electronic energy + Delta-G solvation = -27371.395372 eV Core-core repulsion = 23656.211781 eV Total energy + Delta-G solvation = -3715.183592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.49264 -40.31629 -39.65629 -36.88216 -35.87858 -34.95700 -32.27793 -31.92328 -30.82334 -29.86268 -28.12368 -27.79365 -26.44192 -25.74226 -24.01754 -23.22494 -22.41865 -21.60650 -20.54679 -20.01785 -19.03249 -18.34640 -17.41204 -17.06334 -16.60521 -16.53783 -16.10110 -15.86645 -15.71908 -15.48634 -15.21141 -15.04737 -14.90873 -14.56109 -14.42051 -14.19666 -13.61789 -13.48657 -13.37389 -13.22510 -13.07746 -12.92123 -12.88997 -12.75075 -12.64037 -12.29877 -12.27820 -12.18306 -12.06616 -11.87946 -11.66614 -11.55381 -11.50457 -11.39838 -11.04608 -10.81530 -10.42739 -9.94333 -9.74922 -9.53056 -8.97014 -7.94188 -5.22450 0.52322 0.56794 1.47483 1.49137 1.57579 1.73198 2.27672 2.57145 2.94760 3.37744 3.58892 3.69399 3.77169 3.78787 3.93831 4.05939 4.10902 4.21579 4.22806 4.27465 4.35277 4.36140 4.39035 4.46731 4.59026 4.61781 4.69554 4.73412 4.75284 4.82086 4.84787 4.98685 5.00100 5.04530 5.07324 5.09202 5.10992 5.22404 5.23568 5.24819 5.35791 5.41618 5.46565 5.52144 5.61295 5.69916 5.71066 5.76791 5.79455 6.18979 6.28106 6.67114 7.33480 7.38792 8.12284 8.33783 9.29311 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.001776 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.914507 B =15762.526241 C =16117.033603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.001 4.001 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.507 3.493 6 O -0.569 6.569 7 N -0.717 5.717 8 C 0.140 3.860 9 C -0.094 4.094 10 H 0.122 0.878 11 C -0.138 4.138 12 C 0.142 3.858 13 H 0.081 0.919 14 N -0.730 5.730 15 C -0.242 4.242 16 H 0.080 0.920 17 C -0.081 4.081 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.288 1.288 21 H -0.267 1.267 22 H -0.298 1.298 23 C -0.152 4.152 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.128 4.128 29 C -0.129 4.129 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.119 0.881 37 H 0.113 0.887 38 H 0.415 0.585 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.143 0.857 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.395 -0.443 -29.232 33.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.002 4.002 3 C -0.202 4.202 4 C -0.169 4.169 5 C 0.295 3.705 6 O -0.449 6.449 7 N -0.369 5.369 8 C 0.015 3.985 9 C -0.113 4.113 10 H 0.140 0.860 11 C -0.177 4.177 12 C 0.032 3.968 13 H 0.099 0.901 14 N -0.368 5.368 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.216 1.216 21 H -0.191 1.191 22 H -0.225 1.225 23 C -0.193 4.193 24 C -0.076 4.076 25 C -0.151 4.151 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.146 4.146 29 C -0.147 4.147 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.252 0.748 39 H 0.061 0.939 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.203 0.797 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.154 0.846 50 H 0.152 0.848 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.959 0.108 -29.146 32.761 hybrid contribution -0.838 -0.495 0.917 1.337 sum 14.121 -0.387 -28.229 31.566 Atomic orbital electron populations 1.22060 0.94177 1.01444 1.02719 1.19108 0.95488 0.94965 0.90606 1.22041 1.00451 0.94933 1.02752 1.21898 1.03790 1.00846 0.90335 1.21119 0.79637 0.84312 0.85434 1.90593 1.39306 1.28191 1.86841 1.45977 1.53508 1.32418 1.05007 1.21151 0.97901 0.95965 0.83437 1.22457 1.00617 0.96288 0.91912 0.86024 1.23330 1.01238 0.97310 0.95857 1.21981 0.89842 0.95809 0.89148 0.90103 1.42639 1.20645 1.35899 1.37588 1.19746 1.02518 1.07168 1.07963 0.90237 1.25608 0.97183 1.01674 1.02803 1.69833 1.10183 1.39453 1.42844 0.85131 0.77745 0.78348 0.78499 1.21561 1.19145 1.22466 1.23704 0.98504 0.98277 0.98789 1.19876 0.97642 0.95953 0.94082 1.21445 0.98078 0.95443 1.00088 1.21465 0.99968 1.00343 0.92511 1.21451 0.98684 0.96903 0.98353 1.21384 0.98066 0.96198 0.98933 1.21131 1.00682 1.00481 0.92364 0.91573 0.92679 0.93219 0.92729 0.92781 0.91429 0.86259 0.86909 0.74847 0.93858 0.91877 0.91686 0.90401 0.79715 0.94158 0.91333 0.92793 0.83965 0.84255 0.84557 0.84821 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.99 71.98 0.57 -2.39 16 2 C 0.00 -0.02 0.60 -52.93 -0.03 -0.05 16 3 C -0.14 -2.71 7.99 71.98 0.57 -2.13 16 4 C -0.13 -1.80 3.43 29.85 0.10 -1.69 16 5 C 0.51 10.53 7.24 87.66 0.63 11.17 16 6 O -0.57 -16.31 11.35 -3.04 -0.03 -16.34 16 7 N -0.72 -13.16 5.56 -463.06 -2.57 -15.73 16 8 C 0.14 3.30 5.51 86.38 0.48 3.78 16 9 C -0.09 -2.17 3.75 -10.27 -0.04 -2.21 16 10 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 11 C -0.14 -4.14 7.39 31.12 0.23 -3.91 16 12 C 0.14 5.26 4.48 45.52 0.20 5.46 16 13 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 14 N -0.73 -36.67 5.40 -320.46 -1.73 -38.40 16 15 C -0.24 -13.35 9.97 84.03 0.84 -12.52 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 18 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 19 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 23 C -0.15 -4.69 7.43 31.12 0.23 -4.46 16 24 C -0.08 -1.17 4.76 -19.87 -0.09 -1.27 16 25 C -0.13 -1.72 8.98 22.27 0.20 -1.52 16 26 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 27 C -0.14 -1.66 10.05 22.27 0.22 -1.43 16 28 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 29 C -0.13 -2.01 8.71 22.27 0.19 -1.81 16 30 H 0.07 1.69 5.51 -2.38 -0.01 1.67 16 31 H 0.05 1.04 7.39 -2.39 -0.02 1.02 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.96 7.39 -2.38 -0.02 0.94 16 35 H 0.07 1.60 5.51 -2.39 -0.01 1.59 16 36 H 0.12 1.10 7.50 -2.39 -0.02 1.08 16 37 H 0.11 1.22 7.53 -2.39 -0.02 1.20 16 38 H 0.41 5.01 8.47 -92.71 -0.79 4.23 16 39 H 0.04 1.27 7.85 -2.39 -0.02 1.25 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 42 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.37 20.34 7.92 -92.71 -0.73 19.61 16 44 H 0.25 15.03 8.31 -92.70 -0.77 14.26 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 47 H 0.14 1.23 5.90 -2.91 -0.02 1.21 16 48 H 0.14 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 50 H 0.13 1.30 8.06 -2.91 -0.02 1.27 16 51 H 0.12 1.77 7.10 -2.91 -0.02 1.75 16 Total: -1.00 -70.59 401.42 2.61 -67.98 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.59 Total: 36.25 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 5.23 Total: -21.95 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.02 Total: -114.07 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.03 Total: -16.34 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.59 2.61 -67.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691482106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.718 kcal (2) G-P(sol) polarization free energy of solvation -70.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds