Wall clock time and date at job start Tue Mar 31 2020 15:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.01576 * 2 1 4 4 C 1.54269 * 110.02928 * 121.38667 * 2 1 3 5 5 C 1.54896 * 104.19573 * 142.89952 * 4 2 1 6 6 C 1.54891 * 102.74519 * 322.05696 * 5 4 2 7 7 C 1.53874 * 110.03479 * 238.60505 * 2 1 3 8 8 H 1.08995 * 110.03027 * 121.43041 * 7 2 1 9 9 C 1.50700 * 110.03082 * 359.97438 * 7 2 1 10 10 O 1.21285 * 120.00090 * 272.70324 * 9 7 2 11 11 N 1.34780 * 120.00068 * 92.71051 * 9 7 2 12 12 C 1.46499 * 120.00183 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.46951 * 179.97438 * 12 11 9 14 14 C 1.38231 * 119.99902 * 269.72494 * 13 12 11 15 15 C 1.38235 * 119.99828 * 179.79348 * 14 13 12 16 16 C 1.38235 * 120.00130 * 0.45831 * 15 14 13 17 17 C 1.50698 * 120.00167 * 179.79347 * 16 15 14 18 18 N 1.46508 * 109.47113 * 269.98117 * 17 16 15 19 19 C 1.36935 * 120.00181 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99516 * 359.97438 * 19 18 17 21 21 C 1.38809 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99636 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00017 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47342 * 89.99895 * 23 21 19 25 25 H 1.48504 * 109.46927 * 210.00033 * 23 21 19 26 26 H 1.48497 * 109.46884 * 329.99436 * 23 21 19 27 27 C 1.38233 * 119.99586 * 359.77505 * 16 15 14 28 28 C 1.38236 * 120.00627 * 0.02562 * 27 16 15 29 29 H 1.08997 * 109.46908 * 62.38155 * 1 2 3 30 30 H 1.08994 * 109.47483 * 302.37282 * 1 2 3 31 31 H 1.09005 * 109.46834 * 182.36984 * 1 2 3 32 32 H 1.09005 * 109.47587 * 59.29355 * 3 2 1 33 33 H 1.08998 * 109.47425 * 179.29839 * 3 2 1 34 34 H 1.09008 * 109.47249 * 299.30017 * 3 2 1 35 35 H 1.09000 * 110.48903 * 261.57251 * 4 2 1 36 36 H 1.08998 * 110.48973 * 24.22300 * 4 2 1 37 37 H 1.08999 * 110.75691 * 80.36664 * 5 4 2 38 38 H 1.08993 * 110.75960 * 203.56181 * 5 4 2 39 39 H 1.09001 * 110.48789 * 156.61944 * 6 5 4 40 40 H 1.09003 * 110.48741 * 279.26350 * 6 5 4 41 41 H 0.96998 * 119.99763 * 359.97438 * 11 9 7 42 42 H 1.09000 * 109.46664 * 300.00154 * 12 11 9 43 43 H 1.09004 * 109.46777 * 59.99657 * 12 11 9 44 44 H 1.08003 * 120.00035 * 359.97438 * 14 13 12 45 45 H 1.07999 * 120.00110 * 180.25067 * 15 14 13 46 46 H 1.09004 * 109.47134 * 29.97534 * 17 16 15 47 47 H 1.08999 * 109.47108 * 149.98204 * 17 16 15 48 48 H 0.97004 * 119.99536 * 359.97438 * 18 17 16 49 49 H 0.97003 * 119.99485 * 180.02562 * 22 21 19 50 50 H 1.08001 * 119.99685 * 179.97438 * 27 16 15 51 51 H 1.07999 * 120.00485 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7549 1.2373 5 6 3.3138 -1.5004 0.7200 6 6 2.8876 -1.9410 -0.7024 7 6 2.0572 -0.7531 -1.2340 8 1 2.6868 -0.0946 -1.8324 9 6 0.9039 -1.2589 -2.0616 10 8 0.4083 -2.3382 -1.8156 11 7 0.4232 -0.5120 -3.0753 12 6 -0.6976 -1.0040 -3.8803 13 6 -1.0398 0.0123 -4.9391 14 6 -1.9711 0.9991 -4.6746 15 6 -2.2818 1.9339 -5.6444 16 6 -1.6684 1.8763 -6.8818 17 6 -2.0106 2.8926 -7.9406 18 7 -3.1308 2.4002 -8.7463 19 6 -3.6190 3.1590 -9.7763 20 1 -3.1786 4.1206 -9.9944 21 6 -4.6807 2.6927 -10.5393 22 7 -5.2178 1.5209 -10.2730 23 14 -5.3472 3.7281 -11.9439 24 1 -4.6229 3.3899 -13.1954 25 1 -6.7955 3.4505 -12.1197 26 1 -5.1533 5.1672 -11.6332 27 6 -0.7407 0.8866 -7.1478 28 6 -0.4268 -0.0458 -6.1767 29 1 -0.3633 0.4764 -0.9106 30 1 -0.3634 0.5502 0.8679 31 1 -0.3633 -1.0268 0.0425 32 1 1.6850 1.9586 0.8836 33 1 3.1436 1.4273 0.0126 34 1 1.7055 1.9511 -0.8963 35 1 2.3297 -0.0526 2.0256 36 1 1.3143 -1.4652 1.5974 37 1 4.1710 -0.8286 0.6757 38 1 3.5345 -2.3653 1.3454 39 1 3.7639 -2.1043 -1.3298 40 1 2.2773 -2.8429 -0.6556 41 1 0.8193 0.3513 -3.2719 42 1 -0.4184 -1.9444 -4.3555 43 1 -1.5634 -1.1645 -3.2378 44 1 -2.4537 1.0414 -3.7094 45 1 -3.0064 2.7073 -5.4365 46 1 -2.2907 3.8325 -7.4650 47 1 -1.1446 3.0540 -8.5826 48 1 -3.5261 1.5362 -8.5505 49 1 -5.9595 1.1949 -10.8065 50 1 -0.2617 0.8413 -8.1148 51 1 0.2977 -0.8193 -6.3847 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698717114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:18 Heat of formation + Delta-G solvation = -26.519434 kcal Electronic energy + Delta-G solvation = -27621.941868 eV Core-core repulsion = 23906.053222 eV Total energy + Delta-G solvation = -3715.888646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -40.90904 -39.34257 -37.99527 -35.51809 -34.33483 -32.60516 -32.10387 -30.73171 -30.48863 -29.46816 -27.71387 -26.93530 -25.12195 -24.25448 -22.50250 -22.46344 -21.58249 -20.69558 -20.46906 -19.12076 -17.34954 -17.27375 -16.41174 -16.01875 -15.64187 -15.45076 -15.04081 -14.73172 -14.69286 -14.55308 -13.99098 -13.82781 -13.50778 -13.40134 -13.29214 -13.22073 -13.16820 -12.72489 -12.41049 -12.33819 -12.07588 -12.05687 -11.84823 -11.75704 -11.41017 -11.15833 -11.07009 -10.96799 -10.89479 -10.87915 -10.83250 -10.74334 -10.60480 -10.08269 -9.95529 -9.78896 -9.21694 -8.92569 -8.70334 -8.44297 -6.96729 -5.78665 -3.08734 1.39174 1.62680 2.47155 3.09910 3.42087 3.46931 3.48971 3.98675 4.06285 4.15724 4.32153 4.59610 4.63670 4.77710 4.90226 4.92487 4.94668 4.96787 5.01674 5.08128 5.17801 5.27456 5.29930 5.32896 5.36186 5.45979 5.53452 5.54608 5.54896 5.60753 5.63336 5.69471 5.73161 5.74380 5.84250 5.88652 5.91245 6.02698 6.05531 6.13123 6.15255 6.18494 6.25741 6.46814 6.56080 6.61912 6.68804 7.08394 7.20432 7.34581 7.66647 8.06763 8.38974 9.50538 10.06417 10.42147 11.43742 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031488 B = 0.001866 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.002037 B =15001.753195 C =15236.562905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.113 4.113 7 C -0.106 4.106 8 H 0.091 0.909 9 C 0.525 3.475 10 O -0.542 6.542 11 N -0.725 5.725 12 C 0.165 3.835 13 C -0.124 4.124 14 C -0.104 4.104 15 C -0.106 4.106 16 C -0.064 4.064 17 C 0.184 3.816 18 N -0.727 5.727 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.106 4.106 28 C -0.104 4.104 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.401 0.599 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.386 0.614 49 H 0.256 0.744 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.261 -3.554 23.666 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.128 4.128 8 H 0.109 0.891 9 C 0.312 3.688 10 O -0.419 6.419 11 N -0.377 5.377 12 C 0.043 3.957 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.065 4.065 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.374 4.374 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.235 0.765 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.142 0.858 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.845 -4.198 23.706 29.968 hybrid contribution -0.495 0.716 -1.046 1.361 sum 17.351 -3.482 22.660 28.751 Atomic orbital electron populations 1.22134 0.94030 1.02881 1.02162 1.21048 0.95838 0.95109 0.93358 1.21948 1.00999 0.94607 1.02191 1.22493 0.97424 0.98836 0.96435 1.22465 0.97579 0.99957 0.96017 1.22384 0.98961 0.97762 0.96015 1.22130 0.95388 0.98857 0.96415 0.89120 1.20452 0.84207 0.84434 0.79689 1.90684 1.60337 1.21859 1.69055 1.46247 1.35637 1.22729 1.33055 1.20145 0.89271 0.95390 0.90938 1.19681 0.99730 0.97846 0.95172 1.20977 0.97426 0.94643 0.99182 1.21119 0.99183 0.99131 0.93026 1.20386 0.94569 0.96498 0.95032 1.19707 0.91854 0.92866 0.89842 1.42341 1.36372 1.22451 1.35946 1.19237 1.11679 1.00081 1.06418 0.91056 1.24771 0.98973 0.97212 0.99949 1.69677 1.27094 1.19043 1.42096 0.86161 0.78101 0.79408 0.82328 1.21670 1.21729 1.20721 1.21121 0.97934 0.94434 0.98974 1.20987 0.99572 0.98776 0.92919 0.92199 0.92307 0.91527 0.92223 0.92315 0.92403 0.91369 0.91173 0.91503 0.91296 0.91447 0.89541 0.76466 0.90843 0.90872 0.86401 0.85840 0.95403 0.95411 0.78048 0.93442 0.85834 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.22 37.16 0.27 -1.02 16 2 C -0.05 -0.37 0.94 -153.39 -0.14 -0.52 16 3 C -0.14 -0.80 8.14 37.15 0.30 -0.49 16 4 C -0.11 -0.75 5.90 -25.07 -0.15 -0.90 16 5 C -0.12 -0.76 6.91 -24.73 -0.17 -0.93 16 6 C -0.11 -0.88 6.31 -25.01 -0.16 -1.03 16 7 C -0.11 -0.83 2.95 -90.60 -0.27 -1.09 16 8 H 0.09 0.57 7.67 -51.93 -0.40 0.17 16 9 C 0.53 5.48 4.72 -10.98 -0.05 5.42 16 10 O -0.54 -7.63 14.94 5.55 0.08 -7.55 16 11 N -0.73 -6.81 5.03 -61.47 -0.31 -7.11 16 12 C 0.17 1.82 5.80 -5.20 -0.03 1.79 16 13 C -0.12 -1.51 5.25 -104.63 -0.55 -2.06 16 14 C -0.10 -1.34 9.70 -39.58 -0.38 -1.72 16 15 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 16 C -0.06 -1.09 5.25 -104.63 -0.55 -1.64 16 17 C 0.18 3.71 6.38 -5.19 -0.03 3.68 16 18 N -0.73 -18.54 5.59 -61.08 -0.34 -18.89 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 28 C -0.10 -1.35 9.70 -39.58 -0.38 -1.73 16 29 H 0.06 0.52 7.05 -51.93 -0.37 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.69 6.98 -51.93 -0.36 0.33 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 35 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 36 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.85 6.87 -51.93 -0.36 0.50 16 41 H 0.40 3.10 8.46 -40.82 -0.35 2.76 16 42 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 44 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.39 10.53 7.66 -40.82 -0.31 10.21 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 51 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -32.05 407.63 -10.87 -42.92 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.83 Total: 8.44 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -3.31 Total: -13.68 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.07 Total: -53.62 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.08 Total: -7.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.05 -10.87 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698717114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.400 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds