Wall clock time and date at job start Tue Mar 31 2020 15:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 110.01769 * 2 1 4 4 C 1.54461 * 109.86103 * 238.55619 * 2 1 3 5 5 C 1.54891 * 104.10401 * 264.10738 * 4 2 1 6 6 C 1.54888 * 102.90874 * 322.29729 * 5 4 2 7 7 C 1.53870 * 110.03208 * 121.38795 * 2 1 3 8 8 H 1.09001 * 110.07520 * 238.59384 * 7 2 1 9 9 C 1.50705 * 110.03272 * 0.02562 * 7 2 1 10 10 O 1.21273 * 120.00224 * 86.07986 * 9 7 2 11 11 N 1.34780 * 119.99536 * 266.07914 * 9 7 2 12 12 C 1.46498 * 119.99631 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47085 * 179.97438 * 12 11 9 14 14 C 1.38231 * 120.00361 * 269.72763 * 13 12 11 15 15 C 1.38227 * 120.00394 * 179.79066 * 14 13 12 16 16 C 1.38244 * 119.99849 * 0.43572 * 15 14 13 17 17 C 1.50701 * 119.99694 * 179.83743 * 16 15 14 18 18 N 1.46506 * 109.47084 * 269.97666 * 17 16 15 19 19 C 1.36931 * 119.99679 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00581 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99579 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00106 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99832 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47259 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47197 * 119.99920 * 23 21 19 26 26 H 1.48498 * 109.46990 * 240.00309 * 23 21 19 27 27 C 1.38231 * 119.99795 * 359.81587 * 16 15 14 28 28 C 1.38238 * 120.00226 * 359.97438 * 27 16 15 29 29 H 1.09000 * 109.47557 * 296.12073 * 1 2 3 30 30 H 1.09003 * 109.47388 * 56.11307 * 1 2 3 31 31 H 1.08995 * 109.47462 * 176.11809 * 1 2 3 32 32 H 1.09003 * 109.47051 * 181.39287 * 3 2 1 33 33 H 1.08999 * 109.47336 * 301.38852 * 3 2 1 34 34 H 1.08996 * 109.47346 * 61.39266 * 3 2 1 35 35 H 1.09003 * 110.40899 * 145.51510 * 4 2 1 36 36 H 1.09002 * 110.66078 * 22.81528 * 4 2 1 37 37 H 1.08998 * 110.75374 * 203.89686 * 5 4 2 38 38 H 1.08990 * 110.75605 * 80.70339 * 5 4 2 39 39 H 1.09007 * 110.48403 * 156.53149 * 6 5 4 40 40 H 1.09003 * 110.49095 * 279.16945 * 6 5 4 41 41 H 0.97000 * 120.00142 * 0.02562 * 11 9 7 42 42 H 1.09001 * 109.47397 * 300.00271 * 12 11 9 43 43 H 1.09002 * 109.47050 * 60.00044 * 12 11 9 44 44 H 1.08007 * 119.99823 * 359.97438 * 14 13 12 45 45 H 1.08003 * 120.00485 * 180.27889 * 15 14 13 46 46 H 1.08995 * 109.47204 * 29.98228 * 17 16 15 47 47 H 1.09003 * 109.46614 * 149.97996 * 17 16 15 48 48 H 0.96995 * 119.99480 * 0.02562 * 18 17 16 49 49 H 0.97003 * 119.99867 * 179.97438 * 22 21 19 50 50 H 1.07994 * 119.99817 * 179.97438 * 27 16 15 51 51 H 1.08001 * 120.00202 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0547 -0.7578 -1.2394 5 6 2.3280 -2.1905 -0.7181 6 6 2.8873 -1.9403 0.7045 7 6 2.0570 -0.7529 1.2341 8 1 2.6864 -0.0949 1.8332 9 6 0.9036 -1.2587 2.0618 10 8 0.3938 -2.3279 1.8021 11 7 0.4388 -0.5226 3.0907 12 6 -0.6827 -1.0139 3.8950 13 6 -1.0047 -0.0116 4.9733 14 6 -0.3883 -0.1018 6.2073 15 6 -0.6804 0.8202 7.1949 16 6 -1.5958 1.8271 6.9516 17 6 -1.9169 2.8300 8.0296 18 7 -3.0392 2.3400 8.8338 19 6 -3.5108 3.0886 9.8789 20 1 -3.0559 4.0404 10.1101 21 6 -4.5738 2.6240 10.6413 22 7 -5.1280 1.4638 10.3599 23 14 -5.2178 3.6455 12.0665 24 1 -4.4295 4.8995 12.1727 25 1 -6.6461 3.9776 11.8320 26 1 -5.0900 2.8717 13.3275 27 6 -2.2161 1.9142 5.7194 28 6 -1.9207 0.9948 4.7302 29 1 -0.3634 0.4524 0.9227 30 1 -0.3634 0.5730 -0.8531 31 1 -0.3634 -1.0252 -0.0696 32 1 3.1434 1.4273 -0.0250 33 1 1.6752 1.9622 -0.8772 34 1 1.7157 1.9474 0.9022 35 1 2.9758 -0.3016 -1.6021 36 1 1.3012 -0.7757 -2.0268 37 1 3.0675 -2.6937 -1.3409 38 1 1.4048 -2.7682 -0.6740 39 1 2.7400 -2.8191 1.3323 40 1 3.9439 -1.6763 0.6580 41 1 0.8464 0.3328 3.2982 42 1 -1.5546 -1.1533 3.2559 43 1 -0.4121 -1.9653 4.3529 44 1 0.3239 -0.8909 6.3988 45 1 -0.1953 0.7524 8.1575 46 1 -1.0449 2.9683 8.6687 47 1 -2.1864 3.7818 7.5716 48 1 -3.4480 1.4853 8.6259 49 1 -5.8705 1.1390 10.8929 50 1 -2.9315 2.7006 5.5294 51 1 -2.4057 1.0626 3.7676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698717121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:23 Heat of formation + Delta-G solvation = -25.963752 kcal Electronic energy + Delta-G solvation = -27671.611606 eV Core-core repulsion = 23955.747056 eV Total energy + Delta-G solvation = -3715.864550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.94233 -39.34143 -37.90761 -35.50667 -34.33522 -32.56917 -32.10462 -30.73166 -30.47949 -29.45322 -27.75657 -26.91074 -25.08712 -24.24878 -22.50199 -22.48250 -21.68403 -20.60268 -20.42717 -19.10505 -17.42706 -17.29892 -16.40791 -15.98476 -15.52470 -15.32388 -15.19677 -14.83094 -14.58845 -14.48836 -13.89179 -13.77576 -13.55647 -13.41059 -13.35966 -13.22377 -13.17390 -12.70725 -12.37343 -12.33890 -12.07829 -12.01636 -11.84776 -11.65697 -11.42097 -11.24619 -11.08623 -10.99052 -10.89106 -10.86135 -10.81073 -10.74645 -10.59748 -10.05266 -9.89959 -9.79046 -9.20647 -8.93298 -8.70323 -8.44126 -6.96840 -5.78977 -3.08988 1.39251 1.62719 2.48508 3.10288 3.41633 3.46976 3.49520 3.98915 4.06496 4.18051 4.32293 4.59439 4.64561 4.79967 4.87585 4.93832 4.95250 4.99819 5.01402 5.15244 5.17848 5.28798 5.32414 5.34714 5.36174 5.42761 5.53575 5.54665 5.59367 5.60985 5.63186 5.72290 5.73897 5.77884 5.84365 5.88289 5.92109 6.02034 6.11456 6.13032 6.15252 6.18462 6.25513 6.46782 6.56037 6.61945 6.68869 7.08360 7.20475 7.35482 7.66991 8.08121 8.38616 9.50310 10.06226 10.41945 11.43495 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001876 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.098771 B =14922.597551 C =15177.876442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.114 4.114 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.107 4.107 8 H 0.090 0.910 9 C 0.525 3.475 10 O -0.540 6.540 11 N -0.726 5.726 12 C 0.166 3.834 13 C -0.124 4.124 14 C -0.104 4.104 15 C -0.106 4.106 16 C -0.064 4.064 17 C 0.184 3.816 18 N -0.727 5.727 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.106 4.106 28 C -0.104 4.104 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.401 0.599 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.124 0.876 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.386 0.614 49 H 0.255 0.745 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.880 -3.597 -23.837 30.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.053 4.053 3 C -0.198 4.198 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.144 4.144 7 C -0.129 4.129 8 H 0.108 0.892 9 C 0.312 3.688 10 O -0.417 6.417 11 N -0.378 5.378 12 C 0.043 3.957 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.125 4.125 16 C -0.065 4.065 17 C 0.057 3.943 18 N -0.371 5.371 19 C -0.373 4.373 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.125 4.125 28 C -0.122 4.122 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.235 0.765 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.142 0.858 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.142 0.858 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.472 -4.235 -23.882 29.893 hybrid contribution -0.499 0.705 1.047 1.357 sum 16.972 -3.531 -22.835 28.670 Atomic orbital electron populations 1.22119 0.93958 1.02893 1.02095 1.21089 0.95975 0.94966 0.93309 1.21955 1.00903 0.94782 1.02209 1.22528 1.00779 0.95396 0.96477 1.22478 1.01401 0.96693 0.95427 1.22233 0.98129 0.96895 0.97102 1.22112 0.95466 0.98800 0.96482 0.89183 1.20453 0.84253 0.84314 0.79756 1.90687 1.59579 1.22282 1.69200 1.46258 1.35600 1.23776 1.32127 1.20137 0.89311 0.95516 0.90746 1.19684 0.99869 0.97753 0.95114 1.20984 0.99559 0.98847 0.92862 1.21122 0.98049 0.94385 0.98903 1.20388 0.94579 0.96423 0.95108 1.19707 0.91914 0.93000 0.89650 1.42346 1.36101 1.23879 1.34790 1.19286 1.11601 1.00975 1.05482 0.90991 1.24775 0.98957 0.97309 0.99902 1.69685 1.26594 1.19728 1.41893 0.86094 0.78530 0.79204 0.82201 1.20509 1.21824 1.21818 1.21117 0.99141 0.99277 0.92920 1.20979 0.97545 0.94621 0.99098 0.92241 0.92356 0.91475 0.92329 0.92216 0.92406 0.91409 0.91380 0.91670 0.90695 0.90754 0.91116 0.76494 0.90891 0.90868 0.86372 0.85832 0.95401 0.95405 0.78051 0.93488 0.85844 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.18 37.15 0.27 -1.01 16 2 C -0.05 -0.37 0.94 -153.29 -0.14 -0.52 16 3 C -0.14 -0.80 8.17 37.16 0.30 -0.50 16 4 C -0.11 -0.75 5.92 -24.97 -0.15 -0.90 16 5 C -0.12 -0.92 6.84 -24.74 -0.17 -1.09 16 6 C -0.11 -0.81 6.04 -25.07 -0.15 -0.96 16 7 C -0.11 -0.82 2.94 -90.65 -0.27 -1.09 16 8 H 0.09 0.55 7.67 -51.93 -0.40 0.16 16 9 C 0.53 5.43 4.61 -10.98 -0.05 5.37 16 10 O -0.54 -7.49 15.23 5.56 0.08 -7.40 16 11 N -0.73 -6.79 5.06 -61.47 -0.31 -7.10 16 12 C 0.17 1.82 5.80 -5.19 -0.03 1.78 16 13 C -0.12 -1.51 5.25 -104.62 -0.55 -2.05 16 14 C -0.10 -1.35 9.70 -39.59 -0.38 -1.73 16 15 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 16 C -0.06 -1.09 5.25 -104.62 -0.55 -1.64 16 17 C 0.18 3.71 6.38 -5.19 -0.03 3.68 16 18 N -0.73 -18.54 5.59 -61.08 -0.34 -18.88 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 28 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 29 H 0.06 0.52 7.00 -51.93 -0.36 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.69 7.07 -51.93 -0.37 0.33 16 32 H 0.06 0.29 8.12 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 36 H 0.07 0.44 7.84 -51.93 -0.41 0.04 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.07 0.68 7.48 -51.92 -0.39 0.30 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.40 3.10 8.46 -40.82 -0.35 2.75 16 42 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 45 H 0.12 1.84 8.06 -52.48 -0.42 1.42 16 46 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 47 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 48 H 0.39 10.52 7.66 -40.82 -0.31 10.21 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 51 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 408.13 15.07 6.15 6.15 Total: -1.00 -32.00 408.13 -10.88 -42.89 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.86 Total: 8.43 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -3.30 Total: -13.80 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.07 Total: -53.61 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.00 -10.88 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698717121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.924 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds