Wall clock time and date at job start Tue Mar 31 2020 15:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 110.01769 * 2 1 4 4 C 1.54461 * 109.86103 * 238.55619 * 2 1 3 5 5 C 1.54891 * 104.10401 * 264.10738 * 4 2 1 6 6 C 1.54888 * 102.90874 * 322.29729 * 5 4 2 7 7 C 1.53870 * 110.03208 * 121.38795 * 2 1 3 8 8 H 1.09001 * 110.07520 * 238.59384 * 7 2 1 9 9 C 1.50705 * 110.03272 * 0.02562 * 7 2 1 10 10 O 1.21273 * 120.00224 * 86.07986 * 9 7 2 11 11 N 1.34780 * 119.99536 * 266.07914 * 9 7 2 12 12 C 1.46498 * 119.99631 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47085 * 179.97438 * 12 11 9 14 14 C 1.38231 * 120.00361 * 269.72763 * 13 12 11 15 15 C 1.38227 * 120.00394 * 179.79066 * 14 13 12 16 16 C 1.38244 * 119.99849 * 0.43572 * 15 14 13 17 17 C 1.50701 * 119.99694 * 179.83743 * 16 15 14 18 18 N 1.46506 * 109.47084 * 269.97666 * 17 16 15 19 19 C 1.36931 * 119.99679 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00581 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99579 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00106 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99832 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47259 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47197 * 119.99920 * 23 21 19 26 26 H 1.48498 * 109.46990 * 240.00309 * 23 21 19 27 27 C 1.38231 * 119.99795 * 359.81587 * 16 15 14 28 28 C 1.38238 * 120.00226 * 359.97438 * 27 16 15 29 29 H 1.09000 * 109.47557 * 296.12073 * 1 2 3 30 30 H 1.09003 * 109.47388 * 56.11307 * 1 2 3 31 31 H 1.08995 * 109.47462 * 176.11809 * 1 2 3 32 32 H 1.09003 * 109.47051 * 181.39287 * 3 2 1 33 33 H 1.08999 * 109.47336 * 301.38852 * 3 2 1 34 34 H 1.08996 * 109.47346 * 61.39266 * 3 2 1 35 35 H 1.09003 * 110.40899 * 145.51510 * 4 2 1 36 36 H 1.09002 * 110.66078 * 22.81528 * 4 2 1 37 37 H 1.08998 * 110.75374 * 203.89686 * 5 4 2 38 38 H 1.08990 * 110.75605 * 80.70339 * 5 4 2 39 39 H 1.09007 * 110.48403 * 156.53149 * 6 5 4 40 40 H 1.09003 * 110.49095 * 279.16945 * 6 5 4 41 41 H 0.97000 * 120.00142 * 0.02562 * 11 9 7 42 42 H 1.09001 * 109.47397 * 300.00271 * 12 11 9 43 43 H 1.09002 * 109.47050 * 60.00044 * 12 11 9 44 44 H 1.08007 * 119.99823 * 359.97438 * 14 13 12 45 45 H 1.08003 * 120.00485 * 180.27889 * 15 14 13 46 46 H 1.08995 * 109.47204 * 29.98228 * 17 16 15 47 47 H 1.09003 * 109.46614 * 149.97996 * 17 16 15 48 48 H 0.96995 * 119.99480 * 0.02562 * 18 17 16 49 49 H 0.97003 * 119.99867 * 179.97438 * 22 21 19 50 50 H 1.07994 * 119.99817 * 179.97438 * 27 16 15 51 51 H 1.08001 * 120.00202 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0547 -0.7578 -1.2394 5 6 2.3280 -2.1905 -0.7181 6 6 2.8873 -1.9403 0.7045 7 6 2.0570 -0.7529 1.2341 8 1 2.6864 -0.0949 1.8332 9 6 0.9036 -1.2587 2.0618 10 8 0.3938 -2.3279 1.8021 11 7 0.4388 -0.5226 3.0907 12 6 -0.6827 -1.0139 3.8950 13 6 -1.0047 -0.0116 4.9733 14 6 -0.3883 -0.1018 6.2073 15 6 -0.6804 0.8202 7.1949 16 6 -1.5958 1.8271 6.9516 17 6 -1.9169 2.8300 8.0296 18 7 -3.0392 2.3400 8.8338 19 6 -3.5108 3.0886 9.8789 20 1 -3.0559 4.0404 10.1101 21 6 -4.5738 2.6240 10.6413 22 7 -5.1280 1.4638 10.3599 23 14 -5.2178 3.6455 12.0665 24 1 -4.4295 4.8995 12.1727 25 1 -6.6461 3.9776 11.8320 26 1 -5.0900 2.8717 13.3275 27 6 -2.2161 1.9142 5.7194 28 6 -1.9207 0.9948 4.7302 29 1 -0.3634 0.4524 0.9227 30 1 -0.3634 0.5730 -0.8531 31 1 -0.3634 -1.0252 -0.0696 32 1 3.1434 1.4273 -0.0250 33 1 1.6752 1.9622 -0.8772 34 1 1.7157 1.9474 0.9022 35 1 2.9758 -0.3016 -1.6021 36 1 1.3012 -0.7757 -2.0268 37 1 3.0675 -2.6937 -1.3409 38 1 1.4048 -2.7682 -0.6740 39 1 2.7400 -2.8191 1.3323 40 1 3.9439 -1.6763 0.6580 41 1 0.8464 0.3328 3.2982 42 1 -1.5546 -1.1533 3.2559 43 1 -0.4121 -1.9653 4.3529 44 1 0.3239 -0.8909 6.3988 45 1 -0.1953 0.7524 8.1575 46 1 -1.0449 2.9683 8.6687 47 1 -2.1864 3.7818 7.5716 48 1 -3.4480 1.4853 8.6259 49 1 -5.8705 1.1390 10.8929 50 1 -2.9315 2.7006 5.5294 51 1 -2.4057 1.0626 3.7676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698717121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:22 Heat of formation + Delta-G solvation = -43.894718 kcal Electronic energy + Delta-G solvation = -27672.389151 eV Core-core repulsion = 23955.747056 eV Total energy + Delta-G solvation = -3716.642095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.68523 -40.44907 -38.66896 -36.90860 -35.73856 -33.76681 -33.08410 -31.94206 -31.85833 -30.32045 -28.43461 -28.10181 -26.15809 -25.37857 -24.11444 -23.63076 -22.46225 -21.69603 -21.21017 -19.77358 -19.34009 -18.15257 -17.35316 -16.91840 -16.77755 -16.45576 -16.20948 -16.01116 -15.79588 -15.35573 -15.25228 -14.93792 -14.52028 -14.47094 -14.34840 -14.22234 -14.01858 -13.81961 -13.70109 -13.30387 -13.09807 -13.00009 -12.92864 -12.80677 -12.61405 -12.23253 -12.15784 -12.02136 -11.93811 -11.92021 -11.84062 -11.72844 -11.55560 -11.40702 -11.35065 -11.00930 -10.73691 -10.07544 -9.82486 -9.62826 -9.04568 -7.97025 -5.27406 0.24616 0.49946 1.47028 1.47999 1.58337 1.68229 2.25017 2.54862 2.89341 3.36310 3.49323 3.59501 3.64355 3.73191 3.88878 4.03699 4.12519 4.17339 4.23441 4.27928 4.32860 4.36623 4.41521 4.45162 4.55964 4.60560 4.69304 4.70581 4.76531 4.78335 4.88894 4.89139 4.91681 5.00292 5.03501 5.06938 5.12063 5.16666 5.19255 5.20864 5.34079 5.38704 5.41706 5.45553 5.46521 5.47064 5.54578 5.59740 5.80687 6.05688 6.23799 6.58981 7.29345 7.30373 8.03418 8.28341 9.26448 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.031556 B = 0.001876 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.098771 B =14922.597551 C =15177.876442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.138 4.138 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.106 4.106 7 C -0.105 4.105 8 H 0.113 0.887 9 C 0.525 3.475 10 O -0.580 6.580 11 N -0.717 5.717 12 C 0.172 3.828 13 C -0.108 4.108 14 C -0.099 4.099 15 C -0.115 4.115 16 C -0.087 4.087 17 C 0.186 3.814 18 N -0.740 5.740 19 C -0.247 4.247 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.115 4.115 28 C -0.098 4.098 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.094 0.906 41 H 0.412 0.588 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.140 0.860 45 H 0.122 0.878 46 H 0.031 0.969 47 H 0.031 0.969 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.122 0.878 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.755 -2.512 -24.970 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.051 4.051 3 C -0.195 4.195 4 C -0.149 4.149 5 C -0.162 4.162 6 C -0.144 4.144 7 C -0.126 4.126 8 H 0.131 0.869 9 C 0.313 3.687 10 O -0.459 6.459 11 N -0.368 5.368 12 C 0.049 3.951 13 C -0.108 4.108 14 C -0.117 4.117 15 C -0.133 4.133 16 C -0.088 4.088 17 C 0.060 3.940 18 N -0.382 5.382 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.133 4.133 28 C -0.117 4.117 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.248 0.752 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.158 0.842 45 H 0.140 0.860 46 H 0.049 0.951 47 H 0.049 0.951 48 H 0.205 0.795 49 H 0.060 0.940 50 H 0.140 0.860 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 19.396 -3.096 -25.027 31.814 hybrid contribution -1.025 0.320 1.294 1.682 sum 18.371 -2.776 -23.733 30.140 Atomic orbital electron populations 1.22079 0.95242 1.01254 1.02199 1.21105 0.94867 0.96055 0.93107 1.21938 1.01700 0.93368 1.02539 1.22535 1.01536 0.94605 0.96191 1.22457 1.00509 0.97257 0.95935 1.22264 0.99435 0.96112 0.96583 1.22190 0.94580 0.99221 0.96615 0.86904 1.20954 0.84460 0.83669 0.79612 1.90677 1.60941 1.24119 1.70207 1.46140 1.34992 1.24093 1.31623 1.19986 0.89804 0.94939 0.90389 1.19787 0.98779 0.97190 0.95080 1.21180 0.99598 0.98556 0.92390 1.21170 0.98016 0.94597 0.99544 1.20166 0.96620 0.97015 0.94975 1.19769 0.90134 0.94024 0.90091 1.42556 1.37378 1.23247 1.35038 1.19715 1.11221 1.01187 1.05713 0.90272 1.25637 0.99720 0.98644 1.02910 1.69845 1.27296 1.21601 1.43288 0.85018 0.77634 0.78133 0.78608 1.18795 1.22020 1.22008 1.21162 0.99190 1.00020 0.92938 1.21168 0.97279 0.93843 0.99381 0.92720 0.91516 0.94050 0.91015 0.91854 0.92187 0.89584 0.91608 0.90378 0.93416 0.92820 0.88792 0.75208 0.91284 0.91196 0.84175 0.86021 0.95118 0.95121 0.79538 0.93974 0.86043 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 7.18 71.98 0.52 -1.85 16 2 C -0.05 -0.61 0.94 -51.39 -0.05 -0.66 16 3 C -0.14 -1.13 8.17 71.98 0.59 -0.54 16 4 C -0.11 -1.25 5.92 31.74 0.19 -1.06 16 5 C -0.12 -1.74 6.84 31.89 0.22 -1.52 16 6 C -0.11 -1.46 6.04 31.67 0.19 -1.27 16 7 C -0.10 -1.40 2.94 -10.82 -0.03 -1.44 16 8 H 0.11 1.01 7.67 -2.39 -0.02 0.99 16 9 C 0.52 10.29 4.61 87.66 0.40 10.69 16 10 O -0.58 -16.16 15.23 -3.01 -0.05 -16.21 16 11 N -0.72 -12.13 5.06 -466.78 -2.36 -14.50 16 12 C 0.17 3.51 5.80 85.63 0.50 4.01 16 13 C -0.11 -2.43 5.25 -19.87 -0.10 -2.53 16 14 C -0.10 -2.40 9.70 22.27 0.22 -2.18 16 15 C -0.11 -3.43 9.70 22.27 0.22 -3.21 16 16 C -0.09 -2.94 5.25 -19.86 -0.10 -3.04 16 17 C 0.19 7.52 6.38 85.63 0.55 8.07 16 18 N -0.74 -38.31 5.59 -347.16 -1.94 -40.25 16 19 C -0.25 -13.89 9.99 84.04 0.84 -13.05 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 21 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 22 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 23 Si 0.98 46.25 29.55 68.60 2.03 48.28 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 27 C -0.11 -3.42 9.70 22.27 0.22 -3.20 16 28 C -0.10 -2.38 9.70 22.27 0.22 -2.16 16 29 H 0.05 0.89 7.00 -2.39 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.86 7.07 -2.39 -0.02 0.85 16 32 H 0.07 0.43 8.12 -2.39 -0.02 0.41 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.68 7.84 -2.39 -0.02 0.66 16 36 H 0.07 0.77 7.84 -2.39 -0.02 0.75 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 39 H 0.05 0.97 7.48 -2.38 -0.02 0.95 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.41 5.30 8.46 -92.71 -0.78 4.52 16 42 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 46 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 47 H 0.03 1.22 8.09 -2.39 -0.02 1.21 16 48 H 0.37 20.88 7.66 -92.71 -0.71 20.17 16 49 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 50 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 51 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -69.98 408.13 2.41 -67.57 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.58 Total: 33.94 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 5.03 Total: -18.94 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.02 Total: -114.64 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.05 Total: -16.21 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -69.98 2.41 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698717121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.676 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds