Wall clock time and date at job start Tue Mar 31 2020 16:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47410 * 2 1 4 4 C 1.38238 * 120.00094 * 269.72611 * 3 2 1 5 5 C 1.38231 * 119.99894 * 179.78393 * 4 3 2 6 6 C 1.38230 * 120.00393 * 0.44347 * 5 4 3 7 7 C 1.50700 * 120.00279 * 179.83152 * 6 5 4 8 8 H 1.08999 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47221 * 299.97875 * 7 6 5 10 10 C 1.53006 * 109.47036 * 59.97677 * 7 6 5 11 11 C 1.50696 * 109.47275 * 175.00013 * 10 7 6 12 12 O 1.21287 * 120.00073 * 359.97438 * 11 10 7 13 13 N 1.34773 * 120.00116 * 180.02562 * 11 10 7 14 14 C 1.46499 * 120.00011 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47172 * 175.88590 * 14 13 11 16 16 N 1.46498 * 115.55036 * 279.53979 * 15 14 13 17 17 C 1.36940 * 120.00394 * 295.38829 * 16 15 14 18 18 H 1.08000 * 119.99302 * 357.14920 * 17 16 15 19 19 C 1.38811 * 120.00549 * 177.15602 * 17 16 15 20 20 N 1.31617 * 119.99647 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47144 * 89.99493 * 21 19 17 23 23 H 1.48496 * 109.47385 * 209.99742 * 21 19 17 24 24 H 1.48505 * 109.47127 * 329.99475 * 21 19 17 25 25 C 1.53001 * 117.50158 * 133.87246 * 15 14 13 26 26 C 1.53003 * 117.50297 * 65.20929 * 15 14 13 27 27 C 1.38233 * 119.99897 * 359.80875 * 6 5 4 28 28 C 1.38235 * 120.00339 * 89.99461 * 3 2 1 29 29 H 1.09005 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47465 * 300.00005 * 1 2 3 31 31 H 1.08998 * 109.46665 * 60.00254 * 1 2 3 32 32 H 1.09007 * 109.47239 * 119.99868 * 2 1 3 33 33 H 1.09006 * 109.47523 * 239.99573 * 2 1 3 34 34 H 1.08003 * 119.99627 * 359.97438 * 4 3 2 35 35 H 1.08006 * 119.99897 * 180.27118 * 5 4 3 36 36 H 1.09003 * 109.46979 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46892 * 299.99631 * 9 7 6 38 38 H 1.09002 * 109.46816 * 59.99942 * 9 7 6 39 39 H 1.09000 * 109.47400 * 295.00600 * 10 7 6 40 40 H 1.09005 * 109.47051 * 55.00088 * 10 7 6 41 41 H 0.97002 * 119.99889 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.47564 * 295.88074 * 14 13 11 43 43 H 1.09002 * 109.47344 * 55.88810 * 14 13 11 44 44 H 0.97002 * 120.00352 * 115.37993 * 16 15 14 45 45 H 0.96998 * 119.99646 * 180.02562 * 20 19 17 46 46 H 1.09001 * 117.49591 * 359.97438 * 25 15 14 47 47 H 1.09001 * 117.50202 * 145.02141 * 25 15 14 48 48 H 1.08995 * 117.50142 * 214.98091 * 26 15 14 49 49 H 1.09005 * 117.49523 * 359.97438 * 26 15 14 50 50 H 1.08003 * 120.00354 * 180.02562 * 27 6 5 51 51 H 1.08001 * 119.99460 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7248 3.3752 -1.1971 6 6 2.9543 4.0272 -0.0001 7 6 3.4557 5.4484 -0.0001 8 1 3.5757 5.7913 1.0276 9 6 4.8039 5.5135 -0.7203 10 6 2.4478 6.3448 -0.7223 11 6 2.8875 7.7822 -0.6161 12 8 3.9064 8.0623 -0.0208 13 7 2.1479 8.7567 -1.1816 14 6 2.5751 10.1542 -1.0779 15 6 1.6239 11.0395 -1.8855 16 7 1.8680 11.0765 -3.3295 17 6 3.0345 11.6059 -3.8135 18 1 3.7542 12.0379 -3.1339 19 6 3.2918 11.5874 -5.1774 20 7 2.4149 11.0605 -6.0055 21 14 4.8827 12.3102 -5.8376 22 1 5.9267 11.2548 -5.8781 23 1 4.6566 12.8356 -7.2079 24 1 5.3298 13.4149 -4.9514 25 6 1.1172 12.3216 -1.2217 26 6 0.1720 11.1327 -1.4119 27 6 2.7235 3.3758 1.1971 28 6 2.2627 2.0725 1.1971 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.0928 1.5597 -2.1324 35 1 2.9048 3.8843 -2.1325 36 1 5.1663 6.5415 -0.7207 37 1 5.5219 4.8750 -0.2058 38 1 4.6837 5.1706 -1.7480 39 1 2.3937 6.0580 -1.7725 40 1 1.4656 6.2304 -0.2635 41 1 1.3328 8.5327 -1.6574 42 1 2.5587 10.4625 -0.0325 43 1 3.5868 10.2550 -1.4707 44 1 1.2033 10.7258 -3.9429 45 1 2.5949 11.0473 -6.9585 46 1 1.4613 12.5341 -0.2095 47 1 0.9651 13.1924 -1.8595 48 1 -0.6015 11.2217 -2.1746 49 1 -0.1057 10.5628 -0.5251 50 1 2.9024 3.8853 2.1324 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699662487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:21 Heat of formation + Delta-G solvation = -0.760856 kcal Electronic energy + Delta-G solvation = -27517.276488 eV Core-core repulsion = 23802.504817 eV Total energy + Delta-G solvation = -3714.771670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.11771 -39.26297 -37.58443 -35.81565 -33.72372 -33.15199 -33.01665 -31.06600 -29.72121 -29.17915 -28.15172 -25.86688 -24.38693 -23.89891 -22.95474 -22.06170 -21.72780 -20.36667 -19.71713 -18.98126 -17.17953 -17.07532 -16.16873 -15.93748 -15.67960 -15.22724 -15.09427 -14.96020 -14.28160 -14.10696 -13.98527 -13.89165 -13.66402 -13.35311 -13.26002 -13.19325 -13.06092 -12.85127 -12.45262 -11.98982 -11.95528 -11.88421 -11.61153 -11.43177 -11.15613 -11.12435 -10.99378 -10.97977 -10.90830 -10.80774 -10.66033 -10.26508 -10.26365 -9.75736 -9.55586 -9.29604 -9.04546 -8.88049 -8.62383 -8.55547 -7.08099 -5.84935 -3.14970 1.19095 1.27804 2.98065 3.40827 3.46666 3.47394 3.48133 3.64582 4.40446 4.49404 4.56018 4.58678 4.72708 4.78407 4.87698 4.99712 5.06534 5.09380 5.19102 5.23218 5.26519 5.30718 5.34968 5.38202 5.44692 5.50556 5.58030 5.62131 5.66558 5.67396 5.74543 5.82032 5.84815 5.93436 5.94727 6.04337 6.07135 6.17446 6.25496 6.29666 6.40980 6.45696 6.48909 6.55286 6.59913 6.68058 6.75464 6.87784 6.91714 7.68162 7.92061 8.33166 8.60019 9.44641 9.98030 10.33079 11.37069 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.002299 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.132871 B =12174.596386 C =12689.980420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.076 4.076 7 C -0.033 4.033 8 H 0.084 0.916 9 C -0.149 4.149 10 C -0.134 4.134 11 C 0.510 3.490 12 O -0.548 6.548 13 N -0.712 5.712 14 C 0.147 3.853 15 C 0.129 3.871 16 N -0.688 5.688 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.189 4.189 26 C -0.187 4.187 27 C -0.114 4.114 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.388 0.612 45 H 0.256 0.744 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 -19.195 13.740 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.076 4.076 7 C -0.052 4.052 8 H 0.103 0.897 9 C -0.206 4.206 10 C -0.174 4.174 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.362 5.362 14 C 0.022 3.978 15 C 0.035 3.965 16 N -0.328 5.328 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.230 4.230 26 C -0.225 4.225 27 C -0.132 4.132 28 C -0.136 4.136 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.885 -18.902 14.070 23.882 hybrid contribution 0.165 0.238 -0.996 1.037 sum -3.720 -18.664 13.074 23.089 Atomic orbital electron populations 1.21749 0.94766 1.01588 1.02310 1.20529 0.96170 0.92820 1.02649 1.19866 0.99718 0.96225 0.93286 1.21011 1.00044 0.94923 0.97439 1.21047 0.99213 0.94633 0.97919 1.19936 0.98609 0.95903 0.93142 1.19859 0.94769 0.89448 1.01127 0.89724 1.21967 0.95459 1.03917 0.99301 1.21744 1.00467 0.92025 1.03144 1.20527 0.83758 0.87361 0.78717 1.90642 1.24827 1.83996 1.43173 1.45935 1.27421 1.07153 1.55650 1.21228 0.99553 0.79248 0.97799 1.20169 0.92361 0.97011 0.86936 1.41785 1.21087 1.72251 0.97661 1.19167 0.95860 1.30900 0.90857 0.90965 1.24749 0.98439 1.01400 0.96040 1.69654 1.35401 1.50311 1.02597 0.86182 0.83112 0.78725 0.78154 1.21603 1.21756 1.20610 1.23382 1.04546 0.93904 1.01139 1.23076 0.93566 1.03275 1.02550 1.21070 0.99712 0.94787 0.97617 1.20972 1.00303 0.94916 0.97377 0.92520 0.92572 0.92480 0.91242 0.91169 0.86278 0.85919 0.89953 0.93023 0.93080 0.88799 0.89140 0.76694 0.92634 0.90343 0.77749 0.93426 0.89933 0.88656 0.89025 0.89476 0.86123 0.86397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.08 -0.58 6.06 -27.89 -0.17 -0.75 16 3 C -0.09 -0.82 5.13 -104.63 -0.54 -1.35 16 4 C -0.12 -1.10 9.70 -39.58 -0.38 -1.49 16 5 C -0.11 -1.14 8.76 -39.59 -0.35 -1.49 16 6 C -0.08 -0.81 4.78 -104.63 -0.50 -1.31 16 7 C -0.03 -0.39 2.21 -91.77 -0.20 -0.59 16 8 H 0.08 1.05 7.69 -51.93 -0.40 0.65 16 9 C -0.15 -1.92 8.75 37.16 0.33 -1.59 16 10 C -0.13 -1.58 4.91 -27.88 -0.14 -1.72 16 11 C 0.51 7.96 7.55 -10.99 -0.08 7.88 16 12 O -0.55 -10.28 13.97 5.55 0.08 -10.20 16 13 N -0.71 -11.22 5.52 -60.30 -0.33 -11.55 16 14 C 0.15 2.67 5.72 -4.04 -0.02 2.65 16 15 C 0.13 2.44 2.17 -131.82 -0.29 2.15 16 16 N -0.69 -16.33 5.50 -47.23 -0.26 -16.59 16 17 C -0.24 -6.37 9.53 -15.06 -0.14 -6.52 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.33 13.06 55.49 0.72 -26.61 16 21 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.19 -3.22 10.11 -26.69 -0.27 -3.49 16 26 C -0.19 -2.90 10.07 -26.69 -0.27 -3.17 16 27 C -0.11 -1.13 9.67 -39.58 -0.38 -1.52 16 28 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 35 H 0.12 1.20 7.16 -52.48 -0.38 0.82 16 36 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.62 7.39 -51.93 -0.38 0.24 16 39 H 0.09 1.05 7.57 -51.93 -0.39 0.66 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 5.64 8.41 -40.82 -0.34 5.29 16 42 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 43 H 0.08 1.68 7.76 -51.93 -0.40 1.28 16 44 H 0.39 9.78 8.03 -40.82 -0.33 9.45 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 47 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.12 1.05 7.95 -52.48 -0.42 0.64 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 416.64 15.07 6.28 6.28 Total: -1.00 -30.75 416.64 -10.85 -41.61 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -8.80 Total: 14.52 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -3.52 Total: -14.70 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.13 Total: -54.75 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.75 -10.85 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699662487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.846 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds