Wall clock time and date at job start Tue Mar 31 2020 16:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47410 * 2 1 4 4 C 1.38238 * 120.00094 * 269.72611 * 3 2 1 5 5 C 1.38231 * 119.99894 * 179.78393 * 4 3 2 6 6 C 1.38230 * 120.00393 * 0.44347 * 5 4 3 7 7 C 1.50700 * 120.00279 * 179.83152 * 6 5 4 8 8 H 1.08999 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47221 * 299.97875 * 7 6 5 10 10 C 1.53006 * 109.47036 * 59.97677 * 7 6 5 11 11 C 1.50696 * 109.47275 * 175.00013 * 10 7 6 12 12 O 1.21287 * 120.00073 * 359.97438 * 11 10 7 13 13 N 1.34773 * 120.00116 * 180.02562 * 11 10 7 14 14 C 1.46499 * 120.00011 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47172 * 175.88590 * 14 13 11 16 16 N 1.46498 * 115.55036 * 279.53979 * 15 14 13 17 17 C 1.36940 * 120.00394 * 295.38829 * 16 15 14 18 18 H 1.08000 * 119.99302 * 357.14920 * 17 16 15 19 19 C 1.38811 * 120.00549 * 177.15602 * 17 16 15 20 20 N 1.31617 * 119.99647 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00142 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47144 * 89.99493 * 21 19 17 23 23 H 1.48496 * 109.47385 * 209.99742 * 21 19 17 24 24 H 1.48505 * 109.47127 * 329.99475 * 21 19 17 25 25 C 1.53001 * 117.50158 * 133.87246 * 15 14 13 26 26 C 1.53003 * 117.50297 * 65.20929 * 15 14 13 27 27 C 1.38233 * 119.99897 * 359.80875 * 6 5 4 28 28 C 1.38235 * 120.00339 * 89.99461 * 3 2 1 29 29 H 1.09005 * 109.46951 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47465 * 300.00005 * 1 2 3 31 31 H 1.08998 * 109.46665 * 60.00254 * 1 2 3 32 32 H 1.09007 * 109.47239 * 119.99868 * 2 1 3 33 33 H 1.09006 * 109.47523 * 239.99573 * 2 1 3 34 34 H 1.08003 * 119.99627 * 359.97438 * 4 3 2 35 35 H 1.08006 * 119.99897 * 180.27118 * 5 4 3 36 36 H 1.09003 * 109.46979 * 179.97438 * 9 7 6 37 37 H 1.09000 * 109.46892 * 299.99631 * 9 7 6 38 38 H 1.09002 * 109.46816 * 59.99942 * 9 7 6 39 39 H 1.09000 * 109.47400 * 295.00600 * 10 7 6 40 40 H 1.09005 * 109.47051 * 55.00088 * 10 7 6 41 41 H 0.97002 * 119.99889 * 359.97438 * 13 11 10 42 42 H 1.09003 * 109.47564 * 295.88074 * 14 13 11 43 43 H 1.09002 * 109.47344 * 55.88810 * 14 13 11 44 44 H 0.97002 * 120.00352 * 115.37993 * 16 15 14 45 45 H 0.96998 * 119.99646 * 180.02562 * 20 19 17 46 46 H 1.09001 * 117.49591 * 359.97438 * 25 15 14 47 47 H 1.09001 * 117.50202 * 145.02141 * 25 15 14 48 48 H 1.08995 * 117.50142 * 214.98091 * 26 15 14 49 49 H 1.09005 * 117.49523 * 359.97438 * 26 15 14 50 50 H 1.08003 * 120.00354 * 180.02562 * 27 6 5 51 51 H 1.08001 * 119.99460 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7248 3.3752 -1.1971 6 6 2.9543 4.0272 -0.0001 7 6 3.4557 5.4484 -0.0001 8 1 3.5757 5.7913 1.0276 9 6 4.8039 5.5135 -0.7203 10 6 2.4478 6.3448 -0.7223 11 6 2.8875 7.7822 -0.6161 12 8 3.9064 8.0623 -0.0208 13 7 2.1479 8.7567 -1.1816 14 6 2.5751 10.1542 -1.0779 15 6 1.6239 11.0395 -1.8855 16 7 1.8680 11.0765 -3.3295 17 6 3.0345 11.6059 -3.8135 18 1 3.7542 12.0379 -3.1339 19 6 3.2918 11.5874 -5.1774 20 7 2.4149 11.0605 -6.0055 21 14 4.8827 12.3102 -5.8376 22 1 5.9267 11.2548 -5.8781 23 1 4.6566 12.8356 -7.2079 24 1 5.3298 13.4149 -4.9514 25 6 1.1172 12.3216 -1.2217 26 6 0.1720 11.1327 -1.4119 27 6 2.7235 3.3758 1.1971 28 6 2.2627 2.0725 1.1971 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.0928 1.5597 -2.1324 35 1 2.9048 3.8843 -2.1325 36 1 5.1663 6.5415 -0.7207 37 1 5.5219 4.8750 -0.2058 38 1 4.6837 5.1706 -1.7480 39 1 2.3937 6.0580 -1.7725 40 1 1.4656 6.2304 -0.2635 41 1 1.3328 8.5327 -1.6574 42 1 2.5587 10.4625 -0.0325 43 1 3.5868 10.2550 -1.4707 44 1 1.2033 10.7258 -3.9429 45 1 2.5949 11.0473 -6.9585 46 1 1.4613 12.5341 -0.2095 47 1 0.9651 13.1924 -1.8595 48 1 -0.6015 11.2217 -2.1746 49 1 -0.1057 10.5628 -0.5251 50 1 2.9024 3.8853 2.1324 51 1 2.0822 1.5635 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699662487.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:20 Heat of formation + Delta-G solvation = -17.191589 kcal Electronic energy + Delta-G solvation = -27517.988978 eV Core-core repulsion = 23802.504817 eV Total energy + Delta-G solvation = -3715.484160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12877 -40.28775 -39.02409 -36.68109 -35.27668 -34.76916 -33.88403 -31.77749 -31.65055 -30.08403 -29.13265 -27.15846 -25.93894 -25.09282 -23.66834 -23.31391 -22.60838 -21.38333 -20.89272 -20.35237 -19.14144 -18.26202 -17.35370 -16.92071 -16.71833 -16.48733 -16.25526 -15.90669 -15.85129 -15.41878 -15.02181 -14.92226 -14.70001 -14.49072 -14.43208 -14.09331 -14.00585 -13.74433 -13.71006 -13.52599 -13.01663 -12.93630 -12.86059 -12.64862 -12.33218 -12.28973 -12.26588 -12.21344 -12.04907 -11.88784 -11.79947 -11.71086 -11.58944 -11.48548 -10.95695 -10.92973 -10.50659 -9.94674 -9.76910 -9.36805 -9.03008 -7.97549 -5.25401 0.45461 0.55425 1.44143 1.45581 1.53069 1.73297 2.26732 2.51673 2.87519 3.09983 3.37863 3.65972 3.68300 3.79167 3.86146 3.94980 4.05045 4.11899 4.18907 4.20194 4.24050 4.33381 4.38131 4.51580 4.55283 4.62913 4.67762 4.68892 4.75156 4.79960 4.82885 4.85192 4.94726 5.02247 5.05523 5.09942 5.11822 5.18967 5.20654 5.21015 5.29578 5.34972 5.39382 5.41931 5.53413 5.57281 5.61760 5.78151 5.80513 6.17247 6.25737 6.67691 7.31854 7.35709 8.05865 8.28943 9.24938 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.014080 B = 0.002299 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.132871 B =12174.596386 C =12689.980420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.125 4.125 5 C -0.120 4.120 6 C -0.086 4.086 7 C -0.026 4.026 8 H 0.076 0.924 9 C -0.146 4.146 10 C -0.124 4.124 11 C 0.506 3.494 12 O -0.582 6.582 13 N -0.708 5.708 14 C 0.160 3.840 15 C 0.099 3.901 16 N -0.698 5.698 17 C -0.228 4.228 18 H 0.068 0.932 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.963 3.037 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.272 1.272 25 C -0.186 4.186 26 C -0.152 4.152 27 C -0.122 4.122 28 C -0.122 4.122 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.409 0.591 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.120 0.880 50 H 0.129 0.871 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -20.643 15.277 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.143 4.143 5 C -0.138 4.138 6 C -0.086 4.086 7 C -0.045 4.045 8 H 0.095 0.905 9 C -0.203 4.203 10 C -0.164 4.164 11 C 0.294 3.706 12 O -0.463 6.463 13 N -0.358 5.358 14 C 0.033 3.967 15 C 0.007 3.993 16 N -0.336 5.336 17 C -0.360 4.360 18 H 0.086 0.914 19 C -0.262 4.262 20 N -0.615 5.615 21 Si 0.792 3.208 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.197 1.197 25 C -0.227 4.227 26 C -0.190 4.190 27 C -0.140 4.140 28 C -0.140 4.140 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.150 0.850 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.211 0.789 45 H 0.060 0.940 46 H 0.124 0.876 47 H 0.097 0.903 48 H 0.110 0.890 49 H 0.138 0.862 50 H 0.147 0.853 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.119 -20.345 15.652 26.175 hybrid contribution 0.523 0.655 -1.368 1.605 sum -4.595 -19.691 14.284 24.756 Atomic orbital electron populations 1.21734 0.94336 1.02308 1.01862 1.20576 0.96446 0.91578 1.03489 1.20170 0.98874 0.97211 0.93046 1.21230 0.99917 0.94739 0.98390 1.21140 0.99612 0.95196 0.97838 1.19808 0.99792 0.95212 0.93767 1.19735 0.94033 0.90386 1.00319 0.90528 1.21898 0.96488 1.01978 0.99923 1.21745 1.01540 0.89078 1.04001 1.21200 0.83021 0.88664 0.77677 1.90632 1.26313 1.84711 1.44677 1.45908 1.27817 1.06382 1.55743 1.20929 0.97133 0.80557 0.98038 1.20373 0.95361 0.98954 0.84597 1.41818 1.19883 1.72106 0.99841 1.19399 0.96467 1.29303 0.90824 0.91384 1.25414 1.01231 1.03001 0.96575 1.69775 1.36968 1.52377 1.02346 0.85298 0.79973 0.78079 0.77411 1.21949 1.21986 1.19707 1.23394 1.04654 0.92953 1.01681 1.23156 0.91242 1.01487 1.03087 1.21248 0.99689 0.95324 0.97700 1.21229 0.99785 0.94666 0.98332 0.91257 0.92832 0.93105 0.90240 0.90544 0.85021 0.85856 0.92966 0.92474 0.92689 0.87919 0.86651 0.75558 0.91134 0.94517 0.78926 0.94038 0.87550 0.90348 0.88981 0.86193 0.85281 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.95 6.06 29.85 0.18 -0.77 16 3 C -0.09 -1.48 5.13 -19.87 -0.10 -1.58 16 4 C -0.12 -2.17 9.70 22.27 0.22 -1.95 16 5 C -0.12 -2.33 8.76 22.27 0.20 -2.14 16 6 C -0.09 -1.74 4.78 -19.87 -0.09 -1.83 16 7 C -0.03 -0.59 2.21 -11.54 -0.03 -0.62 16 8 H 0.08 1.87 7.69 -2.39 -0.02 1.86 16 9 C -0.15 -3.79 8.75 71.98 0.63 -3.16 16 10 C -0.12 -2.79 4.91 29.85 0.15 -2.64 16 11 C 0.51 15.60 7.55 87.66 0.66 16.26 16 12 O -0.58 -22.20 13.97 -3.05 -0.04 -22.25 16 13 N -0.71 -21.72 5.52 -463.06 -2.55 -24.28 16 14 C 0.16 5.72 5.72 86.38 0.49 6.21 16 15 C 0.10 3.65 2.17 3.60 0.01 3.66 16 16 N -0.70 -33.35 5.50 -303.34 -1.67 -35.02 16 17 C -0.23 -12.43 9.53 84.03 0.80 -11.63 16 18 H 0.07 3.70 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.96 -57.65 13.06 21.65 0.28 -57.37 16 21 Si 0.96 46.57 29.55 68.60 2.03 48.59 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 24 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 25 C -0.19 -6.00 10.11 30.62 0.31 -5.69 16 26 C -0.15 -4.30 10.07 30.62 0.31 -3.99 16 27 C -0.12 -2.23 9.67 22.27 0.22 -2.02 16 28 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 29 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 33 H 0.08 0.78 8.08 -2.38 -0.02 0.76 16 34 H 0.13 1.87 8.06 -2.91 -0.02 1.84 16 35 H 0.12 2.30 7.16 -2.91 -0.02 2.28 16 36 H 0.05 1.68 5.95 -2.39 -0.01 1.67 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.05 1.34 7.39 -2.39 -0.02 1.33 16 39 H 0.10 2.17 7.57 -2.39 -0.02 2.15 16 40 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.41 10.93 8.41 -92.71 -0.78 10.15 16 42 H 0.07 2.31 7.94 -2.39 -0.02 2.29 16 43 H 0.04 1.61 7.76 -2.39 -0.02 1.60 16 44 H 0.38 19.27 8.03 -92.71 -0.74 18.53 16 45 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.11 2.91 8.08 -2.39 -0.02 2.89 16 47 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 50 H 0.13 2.06 7.95 -2.91 -0.02 2.04 16 51 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -67.46 416.64 2.78 -64.68 By element: Atomic # 1 Polarization: 44.19 SS G_CDS: -0.61 Total: 43.59 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 5.34 Total: -17.95 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -3.94 Total: -116.66 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.04 Total: -22.25 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -67.46 2.78 -64.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699662487.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.490 kcal (2) G-P(sol) polarization free energy of solvation -67.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds