Wall clock time and date at job start Tue Mar 31 2020 16:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46815 * 2 1 4 4 C 1.38235 * 120.00087 * 90.00258 * 3 2 1 5 5 C 1.38229 * 120.00273 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00116 * 359.95434 * 5 4 3 7 7 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47310 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.47099 * 240.00155 * 7 6 5 10 10 C 1.53005 * 109.46933 * 120.00481 * 7 6 5 11 11 C 1.50701 * 109.47033 * 185.00061 * 10 7 6 12 12 O 1.21280 * 120.00115 * 359.97438 * 11 10 7 13 13 N 1.34773 * 119.99872 * 179.97438 * 11 10 7 14 14 C 1.46504 * 119.99831 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46784 * 175.88747 * 14 13 11 16 16 N 1.46499 * 115.55173 * 279.54254 * 15 14 13 17 17 C 1.36942 * 120.00017 * 295.38605 * 16 15 14 18 18 H 1.08007 * 119.99562 * 357.15680 * 17 16 15 19 19 C 1.38811 * 120.00149 * 177.15399 * 17 16 15 20 20 N 1.31616 * 119.99906 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47143 * 90.00413 * 21 19 17 23 23 H 1.48499 * 109.46942 * 210.00072 * 21 19 17 24 24 H 1.48498 * 109.47491 * 330.00072 * 21 19 17 25 25 C 1.53005 * 117.49816 * 133.87355 * 15 14 13 26 26 C 1.53004 * 117.49874 * 65.21499 * 15 14 13 27 27 C 1.38230 * 119.99544 * 0.27799 * 6 5 4 28 28 C 1.38234 * 120.00321 * 359.51045 * 27 6 5 29 29 H 1.08995 * 109.46758 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47008 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47133 * 59.99536 * 1 2 3 32 32 H 1.08999 * 109.46756 * 240.00340 * 2 1 3 33 33 H 1.09002 * 109.46848 * 119.99863 * 2 1 3 34 34 H 1.08002 * 119.99840 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.00374 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46789 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46812 * 300.00066 * 9 7 6 38 38 H 1.08994 * 109.47188 * 60.00301 * 9 7 6 39 39 H 1.09001 * 109.46548 * 304.99926 * 10 7 6 40 40 H 1.08995 * 109.47314 * 65.00066 * 10 7 6 41 41 H 0.97003 * 120.00117 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.47462 * 295.88580 * 14 13 11 43 43 H 1.09001 * 109.47022 * 55.88973 * 14 13 11 44 44 H 0.96998 * 120.00289 * 115.38372 * 16 15 14 45 45 H 0.96994 * 119.99849 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.49762 * 359.97438 * 25 15 14 47 47 H 1.08992 * 117.49813 * 145.01657 * 25 15 14 48 48 H 1.09001 * 117.49384 * 214.97515 * 26 15 14 49 49 H 1.09001 * 117.49690 * 359.96980 * 26 15 14 50 50 H 1.08007 * 119.99990 * 179.72697 * 27 6 5 51 51 H 1.08004 * 120.00493 * 180.24978 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4473 0.0001 8 1 3.5801 5.7898 1.0277 9 6 2.4523 6.3451 -0.7221 10 6 4.8073 5.5105 -0.7204 11 6 5.3688 6.9050 -0.6139 12 8 4.7511 7.7637 -0.0207 13 7 6.5573 7.1977 -1.1779 14 6 7.1028 8.5535 -1.0750 15 6 8.4966 8.5915 -1.7050 16 7 9.5855 8.0936 -0.8608 17 6 9.9109 8.7511 0.2956 18 1 9.3957 9.6623 0.5619 19 6 10.9026 8.2465 1.1254 20 7 11.5306 7.1364 0.8006 21 14 11.3459 9.1431 2.7030 22 1 10.5033 8.6344 3.8150 23 1 12.7777 8.9088 3.0199 24 1 11.1093 10.5987 2.5285 25 6 8.8116 9.7496 -2.6540 26 6 8.5984 8.3397 -3.2107 27 6 2.7207 3.3768 -1.1970 28 6 2.2636 2.0722 -1.1971 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9035 3.8849 2.1325 36 1 2.8167 7.3724 -0.7224 37 1 2.3317 6.0024 -1.7497 38 1 1.4918 6.3000 -0.2089 39 1 5.4985 4.8044 -0.2602 40 1 4.6706 5.2531 -1.7706 41 1 7.0512 6.5109 -1.6527 42 1 6.4481 9.2494 -1.5992 43 1 7.1707 8.8390 -0.0252 44 1 10.0759 7.2982 -1.1208 45 1 12.2234 6.7836 1.3806 46 1 8.0256 10.4842 -2.8298 47 1 9.8289 10.1408 -2.6504 48 1 9.4757 7.8039 -3.5731 49 1 7.6725 8.1465 -3.7524 50 1 2.8975 3.8871 -2.1324 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699662488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:24 Heat of formation + Delta-G solvation = -0.632403 kcal Electronic energy + Delta-G solvation = -27463.555732 eV Core-core repulsion = 23748.789632 eV Total energy + Delta-G solvation = -3714.766100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11858 -39.26166 -37.58414 -35.82216 -33.72321 -33.15859 -33.01367 -31.06381 -29.71801 -29.18106 -28.17663 -25.88099 -24.39400 -23.89549 -22.95685 -22.06093 -21.73112 -20.37013 -19.71909 -18.98676 -17.17821 -17.06876 -16.18235 -15.91930 -15.68288 -15.29325 -15.08446 -14.89430 -14.28935 -14.12462 -13.98800 -13.82284 -13.69073 -13.55022 -13.21519 -13.17459 -13.07818 -12.78389 -12.40407 -12.14679 -11.92618 -11.86601 -11.61740 -11.46820 -11.16024 -11.14553 -10.99176 -10.98074 -10.90740 -10.80534 -10.67519 -10.26175 -10.25101 -9.75449 -9.57858 -9.28822 -9.04044 -8.86860 -8.62360 -8.55588 -7.07714 -5.84483 -3.14562 1.19639 1.28344 2.98208 3.41165 3.46940 3.47665 3.48363 3.65005 4.40535 4.49709 4.56236 4.58493 4.72008 4.77596 4.87865 4.99601 5.05248 5.10435 5.19009 5.23188 5.26121 5.30910 5.34751 5.37342 5.44807 5.49039 5.57960 5.59294 5.62457 5.66464 5.74399 5.82053 5.83577 5.92455 5.94451 6.01555 6.06898 6.15167 6.25293 6.27433 6.40317 6.42635 6.46484 6.55338 6.59403 6.68051 6.75562 6.88130 6.91501 7.68473 7.92158 8.33560 8.60069 9.45036 9.98417 10.33437 11.37487 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002302 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.710020 B =12159.914031 C =13039.217763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.091 4.091 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.076 4.076 7 C -0.035 4.035 8 H 0.086 0.914 9 C -0.147 4.147 10 C -0.133 4.133 11 C 0.510 3.490 12 O -0.548 6.548 13 N -0.712 5.712 14 C 0.147 3.853 15 C 0.129 3.871 16 N -0.688 5.688 17 C -0.237 4.237 18 H 0.072 0.928 19 C -0.010 4.010 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.189 4.189 26 C -0.187 4.187 27 C -0.111 4.111 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.399 0.601 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.388 0.612 45 H 0.256 0.744 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.271 -11.629 -6.599 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.076 4.076 7 C -0.054 4.054 8 H 0.105 0.895 9 C -0.204 4.204 10 C -0.173 4.173 11 C 0.296 3.704 12 O -0.426 6.426 13 N -0.362 5.362 14 C 0.022 3.978 15 C 0.035 3.965 16 N -0.328 5.328 17 C -0.368 4.368 18 H 0.090 0.910 19 C -0.206 4.206 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.230 4.230 26 C -0.225 4.225 27 C -0.129 4.129 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.233 0.767 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.101 0.899 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.105 0.895 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.644 -10.912 -5.991 24.107 hybrid contribution 0.897 -0.186 0.581 1.085 sum -19.747 -11.099 -5.410 23.289 Atomic orbital electron populations 1.21746 0.94842 1.01564 1.02216 1.20532 0.96086 0.92841 1.02745 1.19865 0.99720 0.96199 0.93288 1.20995 1.00111 0.94885 0.97446 1.21109 0.99421 0.94733 0.97757 1.19926 0.98753 0.95728 0.93161 1.19869 0.93314 0.90780 1.01410 0.89542 1.21951 0.98142 1.01252 0.99073 1.21738 0.97701 0.95176 1.02730 1.20526 0.81135 0.90173 0.78521 1.90639 1.59611 1.49737 1.42655 1.45935 1.20644 1.13584 1.55996 1.21229 0.92188 0.82181 1.02228 1.20174 0.89299 1.00520 0.86513 1.41783 1.35319 1.32149 1.23522 1.19168 1.15511 1.04972 0.97165 0.90961 1.24752 0.99286 0.97556 0.99043 1.69652 1.27663 1.21885 1.38729 0.86180 0.77363 0.79047 0.83567 1.21609 1.21756 1.20612 1.23381 1.02470 0.91209 1.05907 1.23075 1.02340 1.00663 0.96376 1.20986 0.99621 0.94611 0.97726 1.20982 1.00256 0.94897 0.97381 0.92513 0.92587 0.92589 0.91148 0.91146 0.86320 0.85998 0.90081 0.93310 0.93002 0.88790 0.89138 0.76689 0.92625 0.90352 0.77746 0.93424 0.89933 0.88658 0.89028 0.89476 0.86121 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.08 -0.59 6.06 -27.88 -0.17 -0.76 16 3 C -0.09 -0.83 5.13 -104.62 -0.54 -1.36 16 4 C -0.12 -1.12 9.70 -39.59 -0.38 -1.50 16 5 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 6 C -0.08 -0.82 4.78 -104.63 -0.50 -1.32 16 7 C -0.03 -0.41 2.21 -91.77 -0.20 -0.61 16 8 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 9 C -0.15 -1.70 8.74 37.16 0.32 -1.38 16 10 C -0.13 -1.58 4.92 -27.88 -0.14 -1.72 16 11 C 0.51 7.97 7.55 -10.99 -0.08 7.89 16 12 O -0.55 -10.29 13.96 5.56 0.08 -10.21 16 13 N -0.71 -11.23 5.52 -60.29 -0.33 -11.56 16 14 C 0.15 2.67 5.72 -4.04 -0.02 2.65 16 15 C 0.13 2.43 2.17 -131.81 -0.29 2.15 16 16 N -0.69 -16.38 5.50 -47.22 -0.26 -16.64 16 17 C -0.24 -6.40 9.53 -15.06 -0.14 -6.55 16 18 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 21 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.19 -3.21 10.11 -26.69 -0.27 -3.48 16 26 C -0.19 -2.89 10.07 -26.69 -0.27 -3.16 16 27 C -0.11 -1.09 8.76 -39.59 -0.35 -1.44 16 28 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.19 7.95 -52.48 -0.42 0.78 16 36 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 37 H 0.05 0.49 7.37 -51.93 -0.38 0.11 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 41 H 0.40 5.64 8.41 -40.82 -0.34 5.30 16 42 H 0.06 0.94 7.94 -51.93 -0.41 0.53 16 43 H 0.08 1.69 7.76 -51.93 -0.40 1.28 16 44 H 0.39 9.81 8.03 -40.82 -0.33 9.48 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 47 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 48 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 49 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.12 1.02 7.16 -52.48 -0.38 0.65 16 51 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 416.63 15.07 6.28 6.28 Total: -1.00 -30.94 416.63 -10.85 -41.79 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -8.80 Total: 14.26 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.52 Total: -14.56 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: 0.13 Total: -54.89 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.94 -10.85 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699662488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.161 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds