Wall clock time and date at job start Tue Mar 31 2020 16:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.46815 * 2 1 4 4 C 1.38235 * 120.00087 * 90.00258 * 3 2 1 5 5 C 1.38229 * 120.00273 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00116 * 359.95434 * 5 4 3 7 7 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.47310 * 0.02562 * 7 6 5 9 9 C 1.53005 * 109.47099 * 240.00155 * 7 6 5 10 10 C 1.53005 * 109.46933 * 120.00481 * 7 6 5 11 11 C 1.50701 * 109.47033 * 185.00061 * 10 7 6 12 12 O 1.21280 * 120.00115 * 359.97438 * 11 10 7 13 13 N 1.34773 * 119.99872 * 179.97438 * 11 10 7 14 14 C 1.46504 * 119.99831 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46784 * 175.88747 * 14 13 11 16 16 N 1.46499 * 115.55173 * 279.54254 * 15 14 13 17 17 C 1.36942 * 120.00017 * 295.38605 * 16 15 14 18 18 H 1.08007 * 119.99562 * 357.15680 * 17 16 15 19 19 C 1.38811 * 120.00149 * 177.15399 * 17 16 15 20 20 N 1.31616 * 119.99906 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47143 * 90.00413 * 21 19 17 23 23 H 1.48499 * 109.46942 * 210.00072 * 21 19 17 24 24 H 1.48498 * 109.47491 * 330.00072 * 21 19 17 25 25 C 1.53005 * 117.49816 * 133.87355 * 15 14 13 26 26 C 1.53004 * 117.49874 * 65.21499 * 15 14 13 27 27 C 1.38230 * 119.99544 * 0.27799 * 6 5 4 28 28 C 1.38234 * 120.00321 * 359.51045 * 27 6 5 29 29 H 1.08995 * 109.46758 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47008 * 300.00135 * 1 2 3 31 31 H 1.08995 * 109.47133 * 59.99536 * 1 2 3 32 32 H 1.08999 * 109.46756 * 240.00340 * 2 1 3 33 33 H 1.09002 * 109.46848 * 119.99863 * 2 1 3 34 34 H 1.08002 * 119.99840 * 359.97438 * 4 3 2 35 35 H 1.08004 * 120.00374 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.46789 * 180.02562 * 9 7 6 37 37 H 1.08999 * 109.46812 * 300.00066 * 9 7 6 38 38 H 1.08994 * 109.47188 * 60.00301 * 9 7 6 39 39 H 1.09001 * 109.46548 * 304.99926 * 10 7 6 40 40 H 1.08995 * 109.47314 * 65.00066 * 10 7 6 41 41 H 0.97003 * 120.00117 * 0.02562 * 13 11 10 42 42 H 1.08993 * 109.47462 * 295.88580 * 14 13 11 43 43 H 1.09001 * 109.47022 * 55.88973 * 14 13 11 44 44 H 0.96998 * 120.00289 * 115.38372 * 16 15 14 45 45 H 0.96994 * 119.99849 * 180.02562 * 20 19 17 46 46 H 1.09004 * 117.49762 * 359.97438 * 25 15 14 47 47 H 1.08992 * 117.49813 * 145.01657 * 25 15 14 48 48 H 1.09001 * 117.49384 * 214.97515 * 26 15 14 49 49 H 1.09001 * 117.49690 * 359.96980 * 26 15 14 50 50 H 1.08007 * 119.99990 * 179.72697 * 27 6 5 51 51 H 1.08004 * 120.00493 * 180.24978 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3756 1.1972 6 6 2.9556 4.0268 0.0000 7 6 3.4590 5.4473 0.0001 8 1 3.5801 5.7898 1.0277 9 6 2.4523 6.3451 -0.7221 10 6 4.8073 5.5105 -0.7204 11 6 5.3688 6.9050 -0.6139 12 8 4.7511 7.7637 -0.0207 13 7 6.5573 7.1977 -1.1779 14 6 7.1028 8.5535 -1.0750 15 6 8.4966 8.5915 -1.7050 16 7 9.5855 8.0936 -0.8608 17 6 9.9109 8.7511 0.2956 18 1 9.3957 9.6623 0.5619 19 6 10.9026 8.2465 1.1254 20 7 11.5306 7.1364 0.8006 21 14 11.3459 9.1431 2.7030 22 1 10.5033 8.6344 3.8150 23 1 12.7777 8.9088 3.0199 24 1 11.1093 10.5987 2.5285 25 6 8.8116 9.7496 -2.6540 26 6 8.5984 8.3397 -3.2107 27 6 2.7207 3.3768 -1.1970 28 6 2.2636 2.0722 -1.1971 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0824 1.5635 2.1325 35 1 2.9035 3.8849 2.1325 36 1 2.8167 7.3724 -0.7224 37 1 2.3317 6.0024 -1.7497 38 1 1.4918 6.3000 -0.2089 39 1 5.4985 4.8044 -0.2602 40 1 4.6706 5.2531 -1.7706 41 1 7.0512 6.5109 -1.6527 42 1 6.4481 9.2494 -1.5992 43 1 7.1707 8.8390 -0.0252 44 1 10.0759 7.2982 -1.1208 45 1 12.2234 6.7836 1.3806 46 1 8.0256 10.4842 -2.8298 47 1 9.8289 10.1408 -2.6504 48 1 9.4757 7.8039 -3.5731 49 1 7.6725 8.1465 -3.7524 50 1 2.8975 3.8871 -2.1324 51 1 2.0839 1.5630 -2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699662488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:23 Heat of formation + Delta-G solvation = -17.314815 kcal Electronic energy + Delta-G solvation = -27464.279136 eV Core-core repulsion = 23748.789632 eV Total energy + Delta-G solvation = -3715.489504 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.12831 -40.28768 -39.02156 -36.68010 -35.27721 -34.76833 -33.88686 -31.77927 -31.65095 -30.08578 -29.11160 -27.14822 -25.94006 -25.09347 -23.66925 -23.30850 -22.60968 -21.38709 -20.89128 -20.35845 -19.14418 -18.24577 -17.34227 -16.93596 -16.79962 -16.37254 -16.28874 -15.94742 -15.81857 -15.44141 -15.04416 -14.79987 -14.67746 -14.52283 -14.44026 -14.27137 -14.01852 -13.77577 -13.53437 -13.45632 -13.00722 -12.93507 -12.87863 -12.71698 -12.31982 -12.28612 -12.25674 -12.21153 -12.05194 -11.88165 -11.80121 -11.70869 -11.57707 -11.47710 -10.95401 -10.94883 -10.49512 -9.94354 -9.77140 -9.36781 -9.03020 -7.97776 -5.25592 0.45461 0.55172 1.43724 1.45265 1.52745 1.73534 2.26925 2.51423 2.87553 3.10291 3.37640 3.66101 3.68729 3.78451 3.86619 3.94328 4.05629 4.13544 4.19922 4.20320 4.23074 4.33309 4.38451 4.51388 4.54408 4.62978 4.67498 4.70477 4.75402 4.80608 4.83445 4.85907 4.94751 5.04595 5.06445 5.09018 5.11466 5.19857 5.21198 5.21572 5.29995 5.37038 5.39855 5.41504 5.53126 5.57243 5.61986 5.77712 5.80238 6.17254 6.25513 6.68051 7.31598 7.36041 8.05906 8.28768 9.24649 Molecular weight = 330.20amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.002302 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.710020 B =12159.914031 C =13039.217763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.087 4.087 7 C -0.030 4.030 8 H 0.061 0.939 9 C -0.141 4.141 10 C -0.123 4.123 11 C 0.506 3.494 12 O -0.583 6.583 13 N -0.708 5.708 14 C 0.160 3.840 15 C 0.098 3.902 16 N -0.698 5.698 17 C -0.228 4.228 18 H 0.068 0.932 19 C -0.070 4.070 20 N -0.964 5.964 21 Si 0.963 3.037 22 H -0.293 1.293 23 H -0.293 1.293 24 H -0.272 1.272 25 C -0.186 4.186 26 C -0.151 4.151 27 C -0.115 4.115 28 C -0.122 4.122 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.409 0.591 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.377 0.623 45 H 0.251 0.749 46 H 0.106 0.894 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.121 0.879 50 H 0.137 0.863 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.692 -12.676 -8.561 26.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.121 4.121 3 C -0.094 4.094 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.087 4.087 7 C -0.049 4.049 8 H 0.080 0.920 9 C -0.198 4.198 10 C -0.163 4.163 11 C 0.294 3.706 12 O -0.464 6.464 13 N -0.358 5.358 14 C 0.033 3.967 15 C 0.006 3.994 16 N -0.337 5.337 17 C -0.360 4.360 18 H 0.086 0.914 19 C -0.263 4.263 20 N -0.614 5.614 21 Si 0.793 3.207 22 H -0.220 1.220 23 H -0.220 1.220 24 H -0.197 1.197 25 C -0.227 4.227 26 C -0.189 4.189 27 C -0.132 4.132 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.245 0.755 42 H 0.090 0.910 43 H 0.054 0.946 44 H 0.211 0.789 45 H 0.059 0.941 46 H 0.125 0.875 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.139 0.861 50 H 0.155 0.845 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -22.094 -11.942 -7.987 26.354 hybrid contribution 1.248 0.151 1.140 1.697 sum -20.846 -11.791 -6.848 24.909 Atomic orbital electron populations 1.21730 0.94291 1.02316 1.01831 1.20579 0.96478 0.91577 1.03500 1.20181 0.98943 0.97211 0.93090 1.21196 1.00075 0.94619 0.98475 1.21239 1.00213 0.95466 0.97848 1.19837 0.99889 0.95109 0.93840 1.19750 0.93448 0.91668 1.00015 0.92022 1.21869 0.97933 0.99747 1.00236 1.21740 0.97440 0.92386 1.04720 1.21202 0.80632 0.91299 0.77432 1.90631 1.60536 1.51202 1.44030 1.45905 1.20756 1.13027 1.56136 1.20929 0.92263 0.83794 0.99664 1.20386 0.88040 1.03123 0.87860 1.41817 1.36652 1.31735 1.23452 1.19405 1.14303 1.04466 0.97847 0.91374 1.25422 1.00188 0.98712 1.01968 1.69774 1.28567 1.23391 1.39710 0.85293 0.76644 0.78461 0.80335 1.22007 1.21966 1.19673 1.23392 1.02340 0.92239 1.04706 1.23159 1.03844 0.98719 0.93146 1.21178 0.99294 0.94988 0.97776 1.21276 0.99641 0.94773 0.98279 0.91221 0.93198 0.92752 0.90135 0.90692 0.85176 0.86329 0.92513 0.91366 0.92899 0.88420 0.86018 0.75530 0.91035 0.94635 0.78934 0.94054 0.87524 0.90387 0.88997 0.86080 0.84528 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.89 71.98 0.71 -0.80 16 2 C -0.08 -0.99 6.06 29.85 0.18 -0.81 16 3 C -0.09 -1.54 5.13 -19.87 -0.10 -1.65 16 4 C -0.13 -2.31 9.70 22.27 0.22 -2.09 16 5 C -0.13 -2.73 9.67 22.27 0.22 -2.51 16 6 C -0.09 -1.79 4.78 -19.87 -0.09 -1.89 16 7 C -0.03 -0.69 2.21 -11.54 -0.03 -0.72 16 8 H 0.06 1.71 7.69 -2.39 -0.02 1.69 16 9 C -0.14 -3.16 8.74 71.98 0.63 -2.53 16 10 C -0.12 -2.76 4.92 29.85 0.15 -2.61 16 11 C 0.51 15.57 7.55 87.66 0.66 16.23 16 12 O -0.58 -22.27 13.96 -3.03 -0.04 -22.31 16 13 N -0.71 -21.62 5.52 -463.06 -2.55 -24.18 16 14 C 0.16 5.71 5.72 86.38 0.49 6.20 16 15 C 0.10 3.60 2.17 3.61 0.01 3.61 16 16 N -0.70 -33.43 5.50 -303.32 -1.67 -35.09 16 17 C -0.23 -12.49 9.53 84.03 0.80 -11.69 16 18 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 20 N -0.96 -57.84 13.06 21.65 0.28 -57.56 16 21 Si 0.96 46.75 29.55 68.60 2.03 48.78 16 22 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 25 C -0.19 -5.97 10.11 30.62 0.31 -5.66 16 26 C -0.15 -4.23 10.07 30.62 0.31 -3.92 16 27 C -0.11 -1.99 8.76 22.27 0.20 -1.79 16 28 C -0.12 -1.94 9.70 22.27 0.22 -1.72 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 34 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.12 2.44 7.95 -2.91 -0.02 2.41 16 36 H 0.06 1.57 5.95 -2.39 -0.01 1.55 16 37 H 0.07 1.23 7.37 -2.39 -0.02 1.21 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.12 1.97 7.58 -2.39 -0.02 1.95 16 41 H 0.41 10.85 8.41 -92.71 -0.78 10.07 16 42 H 0.07 2.32 7.94 -2.39 -0.02 2.30 16 43 H 0.04 1.57 7.76 -2.39 -0.02 1.55 16 44 H 0.38 19.31 8.03 -92.71 -0.74 18.57 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 46 H 0.11 2.90 8.08 -2.38 -0.02 2.88 16 47 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 50 H 0.14 1.86 7.16 -2.91 -0.02 1.84 16 51 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -68.34 416.63 2.78 -65.56 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -0.61 Total: 42.69 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 5.34 Total: -17.89 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.94 Total: -116.84 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -68.34 2.78 -65.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699662488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.246 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds